BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49310.1 Length=1678 Score E Sequences producing significant alignments: (Bits) Value Ahg937723 jgi|Araly1|937723|scaffold_501914.1 2326 0.0 > Ahg937723 jgi|Araly1|937723|scaffold_501914.1 Length=1424 Score = 2326 bits (1259), Expect = 0.0 Identities = 1372/1427 (96%), Gaps = 5/1427 (0%) Strand=Plus/Plus Query 46 GAGAGAGTGAGAGAGAAGCAACAATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGG 105 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAGAGAGT--GAGAGAAGCAACAATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGG 58 Query 106 CTGCCGTAGTGGCAGCGTTGGAGCTTAGCAAGACGAACAAGGATCGGATCAACACTTCGT 165 ||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||| Sbjct 59 CTGCCGTAGTGGCGGCGTTGGAGCTGAGTAAGACAAACAAAGATCGGATCAACACTTCGT 118 Query 166 CTTCCTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGG 225 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CTTCCTTCAATTCTTTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGG 178 Query 226 ATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGAAAAGGAG 285 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 179 ACTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGGAAAGGAG 238 Query 286 ATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTG 345 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 239 ATATTGGTCAGCTTTTCATTGCTGGTTTTGGTTCATCAATGTTGTTTGGAACCATTGTTG 298 Query 346 GATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACA 405 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 299 GATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGCATAGTTTACA 358 Query 406 TACTAAGTTGCATCACCAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCT 465 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TACTAAGTTGCATCACAAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCT 418 Query 466 TGGGTGGTATTGCTACATCTCTCTTGTTTTCTGCTTTCGAGTCCTGGCTAATTGCAGAGC 525 | ||||||||||||||||||||||||||||| || ||||| || |||||||||||||||| Sbjct 419 TAGGTGGTATTGCTACATCTCTCTTGTTTTCGGCATTCGAATCTTGGCTAATTGCAGAGC 478 Query 526 ACAATAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGTATTT- 584 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 479 ACAACAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGT-TTTC 537 Query 585 CTTGGAAACGGTCTGGTGGCTATCCTTTCGGGATTGTTTGGCAATCTTCTTGTTGACACT 644 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 538 CTTGGGAACGGACTGGTGGCTATTCTCTCGGGATTGTTCGGCAATCTTCTTGTTGACACT 597 Query 645 TTTTCCTTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATG 704 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TTTTCATTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATG 657 Query 705 GCGATCATATTGGGAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTG 764 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GCCATCATATTGGCAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTG 717 Query 765 CTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTG 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTG 777 Query 825 GGCGCTATTCAGTCTCTATTCGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCA 884 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 778 GGCGCTATTCAGTCTCTATTTGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCA 837 Query 885 GCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTCTTTGCAACCTTCATGTTA 944 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 838 GCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTTTTTGCAACCTTCATGTTA 897 Query 945 GCCTCAATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTC 1004 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GCCTCGATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTC 957 Query 1005 GAAAACTACATGCAAATTGTCTTTCTAGTCTCGGCTGCTTCACTTCTTCTTCCCATTACA 1064 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 958 GAAAACTACATGCAAATTGTCTTTCTAGTTTCTGCTGCTTCACTTCTTCTCCCCATTACA 1017 Query 1065 ACAAGTGTCTTGGTGACACCGTCAAAGGTGAAAGACGAAGGATTGTCGTTAACTAGCTCC 1124 ||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||| Sbjct 1018 ACAAGCGTCTTGGTGACCCCATCAAAGGTGAAAGACGAAGGCTTGTCGTTAACTAGCTCC 1077 Query 1125 ATTCAGCTGCTTGGTTTCTGTGTTTTTGAGTCTTGTGTCGGAATATTTTGGCCTTCGATA 1184 |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 1078 ATTCAGCTACTTGGTTTCTGTGTTTTTGAGGCTTGTGTAGGAATATTTTGGCCTTCGATA 1137 Query 1185 ATGAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTC 1244 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1138 ATGAAGATGAGATCACAGTATATCCCTGAAGAAGCACGAAGCACCATAATGAATTTCTTC 1197 Query 1245 CGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCGATC 1304 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1198 CGTGTGCCGCTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCCATC 1257 Query 1305 ACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGGCGG 1364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1258 ACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGACGG 1317 Query 1365 CTTATGGTCATCTCTGAAAAGCCAAAGGCAGAAGATTGGAGTCCGATGAAGGAGCGAAAC 1424 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1318 CTTATGGTCATCTCCGAAAAGCCAAAGGCAGAAGAATGGAGTCCGATGAAGGAGCGAAAC 1377 Query 1425 TCGGAAGTTGATCCTCTTACCCTCTGATTGTGT-CCACTCCTAAGCT 1470 ||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1378 TCGGAAGTTGATCCTCTTACCCTCTGATTGTGTTCCACTCCTATGCT 1424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62925084740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5