BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49310.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937723 jgi|Araly1|937723|scaffold_501914.1 2326 0.0
> Ahg937723 jgi|Araly1|937723|scaffold_501914.1
Length=1424
Score = 2326 bits (1259), Expect = 0.0
Identities = 1372/1427 (96%), Gaps = 5/1427 (0%)
Strand=Plus/Plus
Query 46 GAGAGAGTGAGAGAGAAGCAACAATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGG 105
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGT--GAGAGAAGCAACAATGGAGGTTTTCTACTACTTGGTGTTTGGAGTCATGG 58
Query 106 CTGCCGTAGTGGCAGCGTTGGAGCTTAGCAAGACGAACAAGGATCGGATCAACACTTCGT 165
||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 59 CTGCCGTAGTGGCGGCGTTGGAGCTGAGTAAGACAAACAAAGATCGGATCAACACTTCGT 118
Query 166 CTTCCTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGG 225
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTTCCTTCAATTCTTTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGCTGGGG 178
Query 226 ATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGAAAAGGAG 285
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 ACTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGGTTTTGGGAAAGGAG 238
Query 286 ATATTGGTCAGCTATTCATTGCTGGTTTTGGTTCGTCAATGTTGTTTGGAACTATTGTTG 345
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 239 ATATTGGTCAGCTTTTCATTGCTGGTTTTGGTTCATCAATGTTGTTTGGAACCATTGTTG 298
Query 346 GATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGTATAGTTTACA 405
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 GATCTCTGGCTGACAAACAGGGTCGAAAGAGGGCATGTGTTACATACTGCATAGTTTACA 358
Query 406 TACTAAGTTGCATCACCAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCT 465
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TACTAAGTTGCATCACAAAGCACTCTCCACAGTACAAAGTTTTGATGGTTGGCCGTATCT 418
Query 466 TGGGTGGTATTGCTACATCTCTCTTGTTTTCTGCTTTCGAGTCCTGGCTAATTGCAGAGC 525
| ||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 419 TAGGTGGTATTGCTACATCTCTCTTGTTTTCGGCATTCGAATCTTGGCTAATTGCAGAGC 478
Query 526 ACAATAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGTATTT- 584
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 ACAACAAGAGGAACTTTGAGCAACAGTGGCTGTCACTTACATTCTCTAAGGCTGT-TTTC 537
Query 585 CTTGGAAACGGTCTGGTGGCTATCCTTTCGGGATTGTTTGGCAATCTTCTTGTTGACACT 644
||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 538 CTTGGGAACGGACTGGTGGCTATTCTCTCGGGATTGTTCGGCAATCTTCTTGTTGACACT 597
Query 645 TTTTCCTTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATG 704
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTTCATTTGGTCCTGTTGCTCCCTTTGACGCCGCTGCGTGCTTTCTTGCAATTGGAATG 657
Query 705 GCGATCATATTGGGAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTG 764
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCCATCATATTGGCAACATGGTCTGAGAATTTTGGAGATCCATCTGACAGCAAAGACTTG 717
Query 765 CTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTGACTCAGTTCAAAGTTGCTGCCATAGCAATTGCTTCAGATGAAAAGATTGCATTGCTG 777
Query 825 GGCGCTATTCAGTCTCTATTCGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCA 884
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGCGCTATTCAGTCTCTATTTGAAGCCTCGATGTACACCTTTGTTTTCCTCTGGACACCA 837
Query 885 GCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTCTTTGCAACCTTCATGTTA 944
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 GCTCTTAGCCCAAACGATGAAGAAATTCCACATGGCTTCGTTTTTGCAACCTTCATGTTA 897
Query 945 GCCTCAATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTC 1004
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCCTCGATGTTGGGAAGCTCCCTTGCAGCTCGTCTCATGTCTCGCTCATCTCTCAGAGTC 957
Query 1005 GAAAACTACATGCAAATTGTCTTTCTAGTCTCGGCTGCTTCACTTCTTCTTCCCATTACA 1064
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 958 GAAAACTACATGCAAATTGTCTTTCTAGTTTCTGCTGCTTCACTTCTTCTCCCCATTACA 1017
Query 1065 ACAAGTGTCTTGGTGACACCGTCAAAGGTGAAAGACGAAGGATTGTCGTTAACTAGCTCC 1124
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 ACAAGCGTCTTGGTGACCCCATCAAAGGTGAAAGACGAAGGCTTGTCGTTAACTAGCTCC 1077
Query 1125 ATTCAGCTGCTTGGTTTCTGTGTTTTTGAGTCTTGTGTCGGAATATTTTGGCCTTCGATA 1184
|||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1078 ATTCAGCTACTTGGTTTCTGTGTTTTTGAGGCTTGTGTAGGAATATTTTGGCCTTCGATA 1137
Query 1185 ATGAAGATGAGGTCGCAGTATATACCTGAAGAAGCACGAAGCACCATAATGAATTTCTTC 1244
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATGAAGATGAGATCACAGTATATCCCTGAAGAAGCACGAAGCACCATAATGAATTTCTTC 1197
Query 1245 CGTGTTCCACTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCGATC 1304
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 CGTGTGCCGCTCAACATCTTTGTCTGCATCGTCTTGTACAACGTGGACGCATTTCCCATC 1257
Query 1305 ACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGGCGG 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 ACAATCATGTTTGGTATGTGCTCAATCTTCCTCTTCGTAGCCTCCATATTACAACGACGG 1317
Query 1365 CTTATGGTCATCTCTGAAAAGCCAAAGGCAGAAGATTGGAGTCCGATGAAGGAGCGAAAC 1424
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1318 CTTATGGTCATCTCCGAAAAGCCAAAGGCAGAAGAATGGAGTCCGATGAAGGAGCGAAAC 1377
Query 1425 TCGGAAGTTGATCCTCTTACCCTCTGATTGTGT-CCACTCCTAAGCT 1470
||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1378 TCGGAAGTTGATCCTCTTACCCTCTGATTGTGTTCCACTCCTATGCT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5