BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49320.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897788 jgi|Araly1|897788|Al_scaffold_0005_1754 1679 0.0
> Ahg897788 jgi|Araly1|897788|Al_scaffold_0005_1754
Length=1068
Score = 1679 bits (909), Expect = 0.0
Identities = 1009/1059 (95%), Gaps = 0/1059 (0%)
Strand=Plus/Plus
Query 44 ATGTTTGGGTCAAGAGGTCTCTGTTGCAGCAGAATCTGGAATCGTTCTCTGTTTCTCAAA 103
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGTGTCAAGAGGTCTCTGTTGCAGCAGAATCTGGAATCGTTCTCTGTTTCTCAAA 60
Query 104 CGTTCTTCAAACTTCCGAGCTAGTTTCTCTACGAAACGTGTTGGGACCCATAATGGAACA 163
|||| |||||||||||||||||||||||| || |||||| ||||||| || ||||||||
Sbjct 61 CGTTATTCAAACTTCCGAGCTAGTTTCTCGACCAAACGTATTGGGACGCACAATGGAACT 120
Query 164 TTCCACTGCGACGAAGCTTTAGCTTGCTTCATCCTTCGTCGTTCCAATAGATTCTCCGAT 223
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTCCACTGCGACGAAGCCTTAGCTTGCTTCATCCTTCGTCGTTCCAGTAGATTCTCCGAT 180
Query 224 GCTCAAATCGTCCGAACCAGAGATCATCAGGTTTTGGAGAAGCTTGATGCGGCACTTGAT 283
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCAAATCATACGAACCAGAGATCATCAGGTTTTGGAGAAGCTTGATGCGGCACTTGAT 240
Query 284 GTTGGAGGTGTGTATGATCCTCAGAGTGAACGTTATGACCATCACCAGAAAGGATTTAGT 343
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GTTGGAGGTGTGTATGATCCTCAGAGTGAACGTTATGACCATCACCAGAAAGGCTTTAGT 300
Query 344 GAAGTGTTTGGCCTTGGGTTTAATACTAAACTCAGTAGTGCTGGGCTTGTCTATAAGCAT 403
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTGTTTGGCCTTGGGTTCAATACTAAACTCAGTAGTGCTGGGCTTGTCTATAAGCAT 360
Query 404 TATGGATTGGAAATAATTTCCAAGGAGCTTCAACTTGAGCAGAGACATCCTGATGTGTTT 463
||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 361 TATGGATTGGAGATAATTTCTAAGGAGCTTCAACTTGATCAGAGACATCCCGATGTGTTT 420
Query 464 CGATTGTTTCTAGCTGTGTACAAAAACTTCATTGAGGCAGTAGATGCTTTAGACAATGGT 523
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 421 CGATTGTTTCTAGCTGTGTACAAGAACTTCATCGAGGCAGTAGATGCTATAGACAATGGC 480
Query 524 ATCCATCAATATGATACTGACCAACCTCCAAGATATGTAAACAATACTAGCCTGGGGCAT 583
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCCATCAGTATGATACTGACCAGCCTCCAAGATATGTAAACAATACTAGCCTGGGGCAT 540
Query 584 AGGATTGGAAGATTGAACTTAGACTGGATTGAACCTGATCAGTCTAGTGCCAAAGAAGAT 643
||||||||||| || ||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 541 AGGATTGGAAGGTTAAACCTAGACTGGATTGAGCCTGATCAGTCTAGTGAAAAAGAAGAC 600
Query 644 GAAGCCTTTCATCGGGCAATGGAGCTTGCTGGCTCTGAGTTCTTGGAGTGTGTTCATTTT 703
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 601 GAAGCCTTTCATCGGGCAATGGAACTTGCTGGCTCTGAGTTTTTGGAGTGTGTTCATTTT 660
Query 704 CACGCGAAATCGTGGTTACCAGCTCGGTCAATTGTTATGGAGTGTCTTGCAAAACGGTAT 763
|||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct 661 CACGCGAAATCGTGGTTACCAGCTCGATTAATTGTTATGGAATGCCTTGCAAAACGGTAT 720
Query 764 GATATAGACTCCAGTGGAGAAATTATGAAGCTCAGTAAACAATGCCCATGGAAACTCCAT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATATAGACTCCAGTGGAGAAATTATGAAGCTCAGTAAACAATGCCCATGGAAACTCCAT 780
Query 824 ATATTCGAGCTCGAGGAAGAAATGAAGATTGATCCTCCAATAAAATATGTTCTTTACCAG 883
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 ATATTCGAGCTCGAGGAAGAAATGAAGATTGATCCTCCCATAAAATATGTTCTTTACCAG 840
Query 884 GATGATAGAAGCGAAAACTGGAGAATACAAGCAGTTTCGGTTTCACCAGAGAGGTTTGAG 943
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 841 GATGATAGAAGCGAAAACTGGAGAATCCAAGCAGTTTCAGTTTCACCAGAGAGGTTTGAG 900
Query 944 AGCCGTAAAGCTTTACCATTAGCATGGAGAGGTTTAGAAAAGGAGAAGCTCTCAGAGGAA 1003
|||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 901 AGCCGTAAAGCTTTGCCATTATCATGGAGAGGTCTAGAAATGGAGAAGCTCTCAGAGGAA 960
Query 1004 AGCTCAATTCCACGCTGTGTTTTTGTGCATATGAGTGGTTTCATTGGTGCAAACCAAACC 1063
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 AGTTCAATCCCAGGCTGTGTTTTTGTGCATATGAGTGGTTTCATTGGTGCAAACCGAACC 1020
Query 1064 TATGAAGGTGCCTTAGCAATGGCAAGAGCTTCTTTGATG 1102
|||||||||||||| |||||||||||||| |||||||||
Sbjct 1021 TATGAAGGTGCCTTGGCAATGGCAAGAGCCTCTTTGATG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5