BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49330.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937725 jgi|Araly1|937725|scaffold_501916.1 931 0.0
> Ahg937725 jgi|Araly1|937725|scaffold_501916.1
Length=601
Score = 931 bits (504), Expect = 0.0
Identities = 543/562 (97%), Gaps = 2/562 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTATGTTCACCTACTCATGTCTCTTCTCATTTTCATTACCTTCAAATCTTCAATC 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 21 ATGGCTTATGTTCACCTACTCATCTCTCTTCTCATCTTCATTACCTTCAAATCTTCAATC 80
Query 61 TCTGTCGTCCCTGATCCACCAACACAAAACCTAATCAACAGAATCTGCAAACAAACCATT 120
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 81 TCCGTCGTCCCTGATCCACCAACACAAAACCTAATCAACAGAATATGCAAACAAACCATC 140
Query 121 GATTTCAAGTTCTGCAACCAAACAATCACATCTCAGCTAG-TCAGACGACAAACTTCAAT 179
||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||
Sbjct 141 GATTTCAAGTTCTGCAATCAAACAATCACATCTCAGCT-GATCAGACGACAAACCTCAAT 199
Query 180 CAAAACAATCGCGAAACTAACCGCAGCTAAAGCTTGGATCAACGCGATACAAACGCTCGA 239
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 200 CAAAACAATCGCGAAACTAACGGCAGCTAAAGCATGGATCAACGCGATACAAACGCTTGA 259
Query 240 TAACATCGAAGATTCTCTTCTTCCGAAAGCGAAAGATAAACGAGACAAAGCAGAGTTTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TAACATCGAAGATTCTCTTCTTCCGAAAGCGAAAGATAAACGAGACAAAGCAGAGTTTGA 319
Query 300 TGCTTGTAGGAAAGCTTATAAGTTGGTGGATGCTCATTTAGACAACGCGTTGAAGTATTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TGCTTGTAGGAAAGCTTATAAGTTGGTGGATGCTCATTTAGACAACGCGTTGAAGTATTT 379
Query 360 GTATTTACGAGATTATAGATTCATGAGAGCGTATCAAGCTCTTGCACTTGTGAATATTTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTATTTACGAGATTATAGATTCATGAGAGCGTATCAAGCTCTTGCACTTGTGAATATTTC 439
Query 420 CATGTGCAGGACTAGTTTTTTCCATCCGACGCCTATGGTTTATGCGAATTGGAACATGAA 479
|||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 440 CATGTGTAGGACGAGTTTTTTTCATCCGACGCCGATGGTTTATGCGAATTGGAACATGAA 499
Query 480 GATGTTGACGGATATAGCGATTTATGCTGGCAAGATTCTTTCTCCTCCTCCTCCTCTTAC 539
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GATGTTAACGGATATCGCGATTTATGCTGGCAAGATTCTTTCTCCTCCTCCTCCTCTTAG 559
Query 540 GAAGAAGAGCAAGTCGCCATGA 561
||||||||||||||||||||||
Sbjct 560 GAAGAAGAGCAAGTCGCCATGA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5