BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49350.1 Length=2220 Score E Sequences producing significant alignments: (Bits) Value Ahg937728 jgi|Araly1|937728|scaffold_501919.1 2516 0.0 Ahg489304 jgi|Araly1|489304|fgenesh2_kg.6__2438__AT5G24390.1 713 0.0 > Ahg937728 jgi|Araly1|937728|scaffold_501919.1 Length=1660 Score = 2516 bits (1362), Expect = 0.0 Identities = 1557/1651 (94%), Gaps = 13/1651 (1%) Strand=Plus/Plus Query 341 TAGATGAAAGCTTTGAGACGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 400 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 20 TAGATGAAAGCTTTGAGAAGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 79 Query 401 TTATCGTCTCCTCCTTCTTCTTCATCATCATCCTCGTGGATCCAAATACGTTCTGCTCTC 460 ||||| |||||| | ||||||||||||| | ||||||||||||||||||||||||||| Sbjct 80 TTATCATCTCCT-C--CTTCTTCATCATC-T--TCGTGGATCCAAATACGTTCTGCTCTC 133 Query 461 TTCGTTGTTGCTTCTTCATCTCCTGCTTCTTG---TTCTGATCGGCCTCGTCTTAAATCA 517 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 134 TTCGTTGTTGCTTCTTCATCTCCTGCGTCTTGTTCTTCTGATCGGCCTCGTCTTAAATCA 193 Query 518 CCATGGTCTCGGAGGAAAAGGAAAAGGCCACTTAGACCTCAGCAATGGAAGAGGTTTTTT 577 |||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| Sbjct 194 CCATGGTCTCGGAGGAGAAGGAAAAGGCCTCTCAGACCTCAGCAATGGAAGAGATTTTTT 253 Query 578 ACTCCTGACGGTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGA 637 || |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 254 ACACCTGACGGTAGACTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGGAGTAGA 313 Query 638 GGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATTGTATGGTTTT 697 |||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 314 GGTATTGAACCGAGCATTCGGCTGGAGGTGTGGCCATTCCTTCTTGGAGTGTATGGTTTT 373 Query 698 AATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGAGAAAGGAGTATGAGAGA 757 ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 374 AATAGTTCTAAAGAAGAGAGAGTCAATATAAGAAACCGGAGAAGAAAGGAGTATGAGAGA 433 Query 758 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAAC 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 434 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTAAACATG 493 Query 818 GGCAGTGAAACTATCCAAGATGAGTATGATTGGCCTCGAGTTCAAGACACTGACAGTTCA 877 |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 494 GGCAGTGAAACTATGGAAGATGAGTATGATTGGCCTCAAGTTCAAGACACTGACAGTTCA 553 Query 878 TGTTCTGATGAAGTTGTTAGTGCCCGTGAGTCTCTCTCTAGTGACGAAGACATTACTGAA 937 ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||| Sbjct 554 TGTTCTGATGAAGTTGTCAGTGCCCGTGAGTCTCTCTCGAGTGATGAAGACATCACTGAA 613 Query 938 GATATTGGGTATATGAGTGAGGTTTCATGTACAGTTGAGAGAGACGACGGTAGTAGTTCA 997 ||||||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||| Sbjct 614 GATATTGGGTACATGAGTGAAGTTTCATGTACAGTTGAGAGGGATGACGGCAGTAGTTCA 673 Query 998 AGACGAATCACCAATGCTACTATCTCTACACTTAATTCCGAGTCATCAGATTCAGATTCT 1057 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 674 AGACGAATCACCAATGCTACTATCTCTACACTAAATTCCGAGTCATCAGATTCAGATTCT 733 Query 1058 TCAGATGAGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 1117 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 TCAAATGGGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 793 Query 1118 ACTTATCCAGCCAGTTCATCTATTCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 1177 | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 794 GCATATCCAGCCAGCTCATCTATCCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 853 Query 1178 ATTATCCGTCTAGACGCCGTGCGTGCTGACTCAGAGTGGACCTCCTATTCTCCATCCCAG 1237 ||||| |||||||| || ||||||||| | |||||||||||| ||||||||||||||||| Sbjct 854 ATTATTCGTCTAGATGCTGTGCGTGCTAATTCAGAGTGGACCCCCTATTCTCCATCCCAG 913 Query 1238 GCAGTTATATCGGAGGATAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAAGATTAC 1297 ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct 914 GCAGTTATATCCGAGGACAGAGCATGTCGTGCCGCTGAAGCGGTTGGGTTAAAAGATTAC 973 Query 1298 AATCACCTGGAACCGTACAAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCT 1357 |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 974 AATCACTTGGAACCATACAAAATATTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCG 1033 Query 1358 TATGCTTTGTATGACCCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCT 1417 |||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| Sbjct 1034 TATGCTTTATATGACCCTGACATCGGGTATTGCCAAGGAATGAGCGATCTTCTCTCTCCT 1093 Query 1418 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGTTTCGTCGGGTTCATGAAG 1477 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1094 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGCTTCGTCGGGTTCATGAAG 1153 Query 1478 AAAGCTCGTCACAATTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1537 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1154 AAAGCGCGTCATAATTTCAGACTAGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1213 Query 1538 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAGCT 1597 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1214 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTGGAGAAACTCCAAGCC 1273 Query 1598 GAAGACTGTTTCTTTGTATACAGAATGGTTGTTGTGATGTTCAGACGAGAGCTGACACTT 1657 |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1274 GAAGACTGTTTCTTTGTATATAGAATGGTGGTTGTGATGTTCAGACGGGAGCTGACACTC 1333 Query 1658 GATCAGACATTGTGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGG 1717 |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1334 GATCAGACGTTATGTCTATGGGAAGTAATGTGGGCAGATCAAGCTGCAATCAGAGCCGGG 1393 Query 1718 ATGGGAAAATCCGCGTGGAGTAGGATAAGGCAACGTGCACCTCCCACTGATGATTTGGTG 1777 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1394 ATGGGAAAATCCGCATGGAGTAGGATAAGGCAACGTGCACCTCCCACGGATGATTTGGTG 1453 Query 1778 CTCTATGCAATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGTATTATAGAAAGGTATAAC 1837 |||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||| Sbjct 1454 CTCTATGCAATAGCGGCCTCAGTGTTGCAAAGAAGGAAACTTATAATAGAAAAGTATAAC 1513 Query 1838 AGCATGGATGAGATTTTAAGGGAGTGCCAAAGTATGGCAGGGCAGTTAGATGTGTGGAAG 1897 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1514 AGCATGGATGAGATTTTAAGGGAGTGTCAAAGTATGGCAGGGCAATTAGATGTGTGGAAG 1573 Query 1898 CTCCTTGATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTCATTC 1957 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1574 CTCCTGGATGATGCACATGACCTCGTCGTTACTCTACACACCAAGATTGAACATTCATTC 1633 Query 1958 TCATAAATATTTATCTCTATATTATTCCGCG 1988 ||||||| |||| ||||| | || ||||||| Sbjct 1634 TCATAAA-ATTT-TCTCT-T-TTCTTCCGCG 1660 > Ahg489304 jgi|Araly1|489304|fgenesh2_kg.6__2438__AT5G24390.1 Length=2101 Score = 713 bits (386), Expect = 0.0 Identities = 777/962 (81%), Gaps = 41/962 (4%) Strand=Plus/Plus Query 1025 ACA-CTTAATTCCGAGTCATCAGATTCAGATTCTTCAGATGAGAGTGAAGT-GGTACAGG 1082 ||| || ||||| ||||| |||||||||||||| || ||||||| || | | || |||| Sbjct 856 ACACCTGAATTCTGAGTCCTCAGATTCAGATTCATCTGATGAGAATG-ATTCTGTTCAGG 914 Query 1083 TCTTTCAATCTTCTGCTA-CTCCGGATGTGAATAGTACTTATCCAGCCAG-TTCATCTAT 1140 || || ||||||| | ||||| |||||||||| |||| |||| | || ||| Sbjct 915 TCGCTCCTTCTTCTG-AAGGGAGGGATGAAAATAGTACTTCTCCATCCAGCAT-ATATAT 972 Query 1141 TCCCCGGA-CAGAAGAGGATTTTGTGACGTGGCAGCGTATTATCCGTCTAGACGC-CGTG 1198 | | || | || |||||||||||||||| |||||||||||||||||||| ||||| | | Sbjct 973 TTCTCGTACCA-AAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTTGACGCTC-TT 1030 Query 1199 CGTGCTGACT-CAGAGTGGACCTCC-TATT-CTCCATCCCAGGC-AGTTATATCGGAGGA 1254 ||||| || | ||||||||| |||| |||| || ||||||| || | | | || ||| | Sbjct 1031 CGTGCCGA-TACAGAGTGGA-CTCCATATTCCT-CATCCCAAGCTA-TGGTGTCAGAGAA 1086 Query 1255 TAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAA-GATTACAATCACCTGGAACCGT 1313 ||| ||| | ||||| |||||||| ||| | || ||| ||||||| ||| ||||||| | Sbjct 1087 TAGGGCACGCCGTGCTGCTGAGGCAGTT-GTTTTAAAGGATTACAGTCATTTGGAACC-T 1144 Query 1314 AC-AAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCTTATGCTTTGTATGAC 1372 | ||| ||||||| ||||||||||| ||||||||||||||||| ||||| || ||||| Sbjct 1145 TCGAAAGTCTTTCACGCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTATATGAT 1204 Query 1373 CCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCTATACTCTCTGTAATC 1432 ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1205 CCTGAAATTGGCTATTGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCTGTCATA 1264 Query 1433 CCTGATGACCATGAAGTC-TTTTGGTGTTTCGTCGGGTTCATGAAGAAAGCTCGTCACAA 1491 ||||||||| | || | | ||||||||||| || ||||||||||||||||| ||||| || Sbjct 1265 CCTGATGACTACGAGG-CATTTTGGTGTTTTGTTGGGTTCATGAAGAAAGCACGTCAGAA 1323 Query 1492 TTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTCTCAAAGATAATCAA 1551 ||||||||| || |||||||| |||| ||| |||||||||||||| |||||||| ||||| Sbjct 1324 TTTCAGACTCGATGAGGTTGGGATCACAAGGCAACTCAACATAGTATCAAAGATTATCAA 1383 Query 1552 ATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAG-CTGAAGACTGTTTCT 1610 ||| |||||||| ||||| || | ||| ||||||||| || ||| | ||||||||||||| Sbjct 1384 ATCCAAAGACTCACAGCTCTACAAGCATCTTGAGAAAGTC-AAGGCGGAAGACTGTTTCT 1442 Query 1611 TTGTATACAGAATGGTTG-TTGTGATGTTCAGACGAGAGCTGACACTTGATCAGACATTG 1669 |||| ||||||||||| | |||||||||| ||| |||||||||| || || || ||| || Sbjct 1443 TTGTTTACAGAATGGT-GCTTGTGATGTTTAGAAGAGAGCTGACTCTGGAGCAAACACTG 1501 Query 1670 TGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGGATGGGAAAATCC 1729 | ||| |||||||| || |||||||| ||||| ||| | ||||| || ||||| ||||| Sbjct 1502 TATCTCTGGGAAGTGATTTGGGCAGACCAAGCTGCAGTAAGAGCTGGCATGGGGAAATCT 1561 Query 1730 GCGTGGAGTAG--GA-TAAGGCAACGTGCACCTCCCACTGATGATTTGGTGCTCTATGCA 1786 | ||||| | || ||| ||| || || |||||||| || |||||| |||| || || Sbjct 1562 TCCTGGAGCCGTCGAATAAAGCAGCGGGCTCCTCCCACAGAGGATTTGTTGCTGTACGCG 1621 Query 1787 ATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGT-ATTATAGA-AAGGTATAACAGCATGG 1844 |||| || || ||||||||||| |||||| || || ||||| ||| || || ||||||| Sbjct 1622 GTAGCTGCTTCTGTGTTGCAAAGGAGGAAA-GTCATAATAGAGAAG-TACAATAGCATGG 1679 Query 1845 ATGAGATTTTAAGGGAGTGCCA-AAGTATGGCAGGGCAGTTAGATGTGTGGAAGCTCCTT 1903 | |||||| | |||||||||| || ||||| |||| | |||| |||||||||||| || Sbjct 1680 AGGAGATTCTCCGGGAGTGCCACAA-TATGGTAGGGAAACTAGACGTGTGGAAGCTC-TT 1737 Query 1904 -GATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTC-ATTCTCAT 1961 || |||||||| ||||| |||| || || ||| ||||||| |||||||| | || ||| Sbjct 1738 AGACGATGCACACGACCTTATTGTCACCCTCCACGCCAAGATCGAACATTCGAATCCCAT 1797 Query 1962 AA 1963 || Sbjct 1798 AA 1799 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83569997530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5