BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49350.1
Length=2220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937728 jgi|Araly1|937728|scaffold_501919.1 2516 0.0
Ahg489304 jgi|Araly1|489304|fgenesh2_kg.6__2438__AT5G24390.1 713 0.0
> Ahg937728 jgi|Araly1|937728|scaffold_501919.1
Length=1660
Score = 2516 bits (1362), Expect = 0.0
Identities = 1557/1651 (94%), Gaps = 13/1651 (1%)
Strand=Plus/Plus
Query 341 TAGATGAAAGCTTTGAGACGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 400
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 20 TAGATGAAAGCTTTGAGAAGGATTCAAACGACGTCTTCGTCTTCTAATCCTTCATCGCCA 79
Query 401 TTATCGTCTCCTCCTTCTTCTTCATCATCATCCTCGTGGATCCAAATACGTTCTGCTCTC 460
||||| |||||| | ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 80 TTATCATCTCCT-C--CTTCTTCATCATC-T--TCGTGGATCCAAATACGTTCTGCTCTC 133
Query 461 TTCGTTGTTGCTTCTTCATCTCCTGCTTCTTG---TTCTGATCGGCCTCGTCTTAAATCA 517
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 134 TTCGTTGTTGCTTCTTCATCTCCTGCGTCTTGTTCTTCTGATCGGCCTCGTCTTAAATCA 193
Query 518 CCATGGTCTCGGAGGAAAAGGAAAAGGCCACTTAGACCTCAGCAATGGAAGAGGTTTTTT 577
|||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||
Sbjct 194 CCATGGTCTCGGAGGAGAAGGAAAAGGCCTCTCAGACCTCAGCAATGGAAGAGATTTTTT 253
Query 578 ACTCCTGACGGTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGA 637
|| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 254 ACACCTGACGGTAGACTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGGAGTAGA 313
Query 638 GGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATTGTATGGTTTT 697
|||||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 314 GGTATTGAACCGAGCATTCGGCTGGAGGTGTGGCCATTCCTTCTTGGAGTGTATGGTTTT 373
Query 698 AATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGAGAAAGGAGTATGAGAGA 757
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 374 AATAGTTCTAAAGAAGAGAGAGTCAATATAAGAAACCGGAGAAGAAAGGAGTATGAGAGA 433
Query 758 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAAC 817
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 434 CTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTAAACATG 493
Query 818 GGCAGTGAAACTATCCAAGATGAGTATGATTGGCCTCGAGTTCAAGACACTGACAGTTCA 877
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 494 GGCAGTGAAACTATGGAAGATGAGTATGATTGGCCTCAAGTTCAAGACACTGACAGTTCA 553
Query 878 TGTTCTGATGAAGTTGTTAGTGCCCGTGAGTCTCTCTCTAGTGACGAAGACATTACTGAA 937
||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 554 TGTTCTGATGAAGTTGTCAGTGCCCGTGAGTCTCTCTCGAGTGATGAAGACATCACTGAA 613
Query 938 GATATTGGGTATATGAGTGAGGTTTCATGTACAGTTGAGAGAGACGACGGTAGTAGTTCA 997
||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||
Sbjct 614 GATATTGGGTACATGAGTGAAGTTTCATGTACAGTTGAGAGGGATGACGGCAGTAGTTCA 673
Query 998 AGACGAATCACCAATGCTACTATCTCTACACTTAATTCCGAGTCATCAGATTCAGATTCT 1057
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 674 AGACGAATCACCAATGCTACTATCTCTACACTAAATTCCGAGTCATCAGATTCAGATTCT 733
Query 1058 TCAGATGAGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 1117
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TCAAATGGGAGTGAAGTGGTACAGGTCTTTCAATCTTCTGCTACTCCGGATGTGAATAGT 793
Query 1118 ACTTATCCAGCCAGTTCATCTATTCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 1177
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 794 GCATATCCAGCCAGCTCATCTATCCCCCGGACAGAAGAGGATTTTGTGACGTGGCAGCGT 853
Query 1178 ATTATCCGTCTAGACGCCGTGCGTGCTGACTCAGAGTGGACCTCCTATTCTCCATCCCAG 1237
||||| |||||||| || ||||||||| | |||||||||||| |||||||||||||||||
Sbjct 854 ATTATTCGTCTAGATGCTGTGCGTGCTAATTCAGAGTGGACCCCCTATTCTCCATCCCAG 913
Query 1238 GCAGTTATATCGGAGGATAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAAGATTAC 1297
||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 914 GCAGTTATATCCGAGGACAGAGCATGTCGTGCCGCTGAAGCGGTTGGGTTAAAAGATTAC 973
Query 1298 AATCACCTGGAACCGTACAAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCT 1357
|||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 974 AATCACTTGGAACCATACAAAATATTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCG 1033
Query 1358 TATGCTTTGTATGACCCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCT 1417
|||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1034 TATGCTTTATATGACCCTGACATCGGGTATTGCCAAGGAATGAGCGATCTTCTCTCTCCT 1093
Query 1418 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGTTTCGTCGGGTTCATGAAG 1477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1094 ATACTCTCTGTAATCCCTGATGACCATGAAGTCTTTTGGTGCTTCGTCGGGTTCATGAAG 1153
Query 1478 AAAGCTCGTCACAATTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1537
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1154 AAAGCGCGTCATAATTTCAGACTAGACGAGGTTGGAATCAGAAGACAACTCAACATAGTC 1213
Query 1538 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAGCT 1597
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1214 TCAAAGATAATCAAATCTAAAGACTCTCAGCTTTATAGGCACCTGGAGAAACTCCAAGCC 1273
Query 1598 GAAGACTGTTTCTTTGTATACAGAATGGTTGTTGTGATGTTCAGACGAGAGCTGACACTT 1657
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1274 GAAGACTGTTTCTTTGTATATAGAATGGTGGTTGTGATGTTCAGACGGGAGCTGACACTC 1333
Query 1658 GATCAGACATTGTGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGG 1717
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1334 GATCAGACGTTATGTCTATGGGAAGTAATGTGGGCAGATCAAGCTGCAATCAGAGCCGGG 1393
Query 1718 ATGGGAAAATCCGCGTGGAGTAGGATAAGGCAACGTGCACCTCCCACTGATGATTTGGTG 1777
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1394 ATGGGAAAATCCGCATGGAGTAGGATAAGGCAACGTGCACCTCCCACGGATGATTTGGTG 1453
Query 1778 CTCTATGCAATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGTATTATAGAAAGGTATAAC 1837
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||
Sbjct 1454 CTCTATGCAATAGCGGCCTCAGTGTTGCAAAGAAGGAAACTTATAATAGAAAAGTATAAC 1513
Query 1838 AGCATGGATGAGATTTTAAGGGAGTGCCAAAGTATGGCAGGGCAGTTAGATGTGTGGAAG 1897
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1514 AGCATGGATGAGATTTTAAGGGAGTGTCAAAGTATGGCAGGGCAATTAGATGTGTGGAAG 1573
Query 1898 CTCCTTGATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTCATTC 1957
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1574 CTCCTGGATGATGCACATGACCTCGTCGTTACTCTACACACCAAGATTGAACATTCATTC 1633
Query 1958 TCATAAATATTTATCTCTATATTATTCCGCG 1988
||||||| |||| ||||| | || |||||||
Sbjct 1634 TCATAAA-ATTT-TCTCT-T-TTCTTCCGCG 1660
> Ahg489304 jgi|Araly1|489304|fgenesh2_kg.6__2438__AT5G24390.1
Length=2101
Score = 713 bits (386), Expect = 0.0
Identities = 777/962 (81%), Gaps = 41/962 (4%)
Strand=Plus/Plus
Query 1025 ACA-CTTAATTCCGAGTCATCAGATTCAGATTCTTCAGATGAGAGTGAAGT-GGTACAGG 1082
||| || ||||| ||||| |||||||||||||| || ||||||| || | | || ||||
Sbjct 856 ACACCTGAATTCTGAGTCCTCAGATTCAGATTCATCTGATGAGAATG-ATTCTGTTCAGG 914
Query 1083 TCTTTCAATCTTCTGCTA-CTCCGGATGTGAATAGTACTTATCCAGCCAG-TTCATCTAT 1140
|| || ||||||| | ||||| |||||||||| |||| |||| | || |||
Sbjct 915 TCGCTCCTTCTTCTG-AAGGGAGGGATGAAAATAGTACTTCTCCATCCAGCAT-ATATAT 972
Query 1141 TCCCCGGA-CAGAAGAGGATTTTGTGACGTGGCAGCGTATTATCCGTCTAGACGC-CGTG 1198
| | || | || |||||||||||||||| |||||||||||||||||||| ||||| | |
Sbjct 973 TTCTCGTACCA-AAGAGGATTTTGTGACCTGGCAGCGTATTATCCGTCTTGACGCTC-TT 1030
Query 1199 CGTGCTGACT-CAGAGTGGACCTCC-TATT-CTCCATCCCAGGC-AGTTATATCGGAGGA 1254
||||| || | ||||||||| |||| |||| || ||||||| || | | | || ||| |
Sbjct 1031 CGTGCCGA-TACAGAGTGGA-CTCCATATTCCT-CATCCCAAGCTA-TGGTGTCAGAGAA 1086
Query 1255 TAGAGCATGTCGTGCCGCTGAGGCGGTTGGGTTGAAA-GATTACAATCACCTGGAACCGT 1313
||| ||| | ||||| |||||||| ||| | || ||| ||||||| ||| ||||||| |
Sbjct 1087 TAGGGCACGCCGTGCTGCTGAGGCAGTT-GTTTTAAAGGATTACAGTCATTTGGAACC-T 1144
Query 1314 AC-AAAATCTTTCAAGCTGCACGGCTAGTTGCTGTTCTTGAAGCTTATGCTTTGTATGAC 1372
| ||| ||||||| ||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 1145 TCGAAAGTCTTTCACGCTGCACGGCTTGTTGCTGTTCTTGAAGCCTATGCCTTATATGAT 1204
Query 1373 CCTGACATTGGATATTGCCAAGGAATGAGTGATCTTCTCTCTCCTATACTCTCTGTAATC 1432
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1205 CCTGAAATTGGCTATTGCCAAGGAATGAGTGATCTTCTCTCCCCTATACTCTCTGTCATA 1264
Query 1433 CCTGATGACCATGAAGTC-TTTTGGTGTTTCGTCGGGTTCATGAAGAAAGCTCGTCACAA 1491
||||||||| | || | | ||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 1265 CCTGATGACTACGAGG-CATTTTGGTGTTTTGTTGGGTTCATGAAGAAAGCACGTCAGAA 1323
Query 1492 TTTCAGACTTGACGAGGTTGGAATCAGAAGACAACTCAACATAGTCTCAAAGATAATCAA 1551
||||||||| || |||||||| |||| ||| |||||||||||||| |||||||| |||||
Sbjct 1324 TTTCAGACTCGATGAGGTTGGGATCACAAGGCAACTCAACATAGTATCAAAGATTATCAA 1383
Query 1552 ATCTAAAGACTCTCAGCTTTATAGGCACCTTGAGAAACTCCAAG-CTGAAGACTGTTTCT 1610
||| |||||||| ||||| || | ||| ||||||||| || ||| | |||||||||||||
Sbjct 1384 ATCCAAAGACTCACAGCTCTACAAGCATCTTGAGAAAGTC-AAGGCGGAAGACTGTTTCT 1442
Query 1611 TTGTATACAGAATGGTTG-TTGTGATGTTCAGACGAGAGCTGACACTTGATCAGACATTG 1669
|||| ||||||||||| | |||||||||| ||| |||||||||| || || || ||| ||
Sbjct 1443 TTGTTTACAGAATGGT-GCTTGTGATGTTTAGAAGAGAGCTGACTCTGGAGCAAACACTG 1501
Query 1670 TGTCTATGGGAAGTAATGTGGGCAGATCAAGCCGCAATCAGAGCCGGGATGGGAAAATCC 1729
| ||| |||||||| || |||||||| ||||| ||| | ||||| || ||||| |||||
Sbjct 1502 TATCTCTGGGAAGTGATTTGGGCAGACCAAGCTGCAGTAAGAGCTGGCATGGGGAAATCT 1561
Query 1730 GCGTGGAGTAG--GA-TAAGGCAACGTGCACCTCCCACTGATGATTTGGTGCTCTATGCA 1786
| ||||| | || ||| ||| || || |||||||| || |||||| |||| || ||
Sbjct 1562 TCCTGGAGCCGTCGAATAAAGCAGCGGGCTCCTCCCACAGAGGATTTGTTGCTGTACGCG 1621
Query 1787 ATAGCGGCCTCGGTGTTGCAAAGAAGGAAACGT-ATTATAGA-AAGGTATAACAGCATGG 1844
|||| || || ||||||||||| |||||| || || ||||| ||| || || |||||||
Sbjct 1622 GTAGCTGCTTCTGTGTTGCAAAGGAGGAAA-GTCATAATAGAGAAG-TACAATAGCATGG 1679
Query 1845 ATGAGATTTTAAGGGAGTGCCA-AAGTATGGCAGGGCAGTTAGATGTGTGGAAGCTCCTT 1903
| |||||| | |||||||||| || ||||| |||| | |||| |||||||||||| ||
Sbjct 1680 AGGAGATTCTCCGGGAGTGCCACAA-TATGGTAGGGAAACTAGACGTGTGGAAGCTC-TT 1737
Query 1904 -GATGATGCACATGACCTCGTTGTTACTCTACACACCAAGATTGAACATTC-ATTCTCAT 1961
|| |||||||| ||||| |||| || || ||| ||||||| |||||||| | || |||
Sbjct 1738 AGACGATGCACACGACCTTATTGTCACCCTCCACGCCAAGATCGAACATTCGAATCCCAT 1797
Query 1962 AA 1963
||
Sbjct 1798 AA 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83569997530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5