BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49360.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937729 jgi|Araly1|937729|scaffold_501920.1 1295 0.0
Ahg941993 jgi|Araly1|941993|scaffold_602537.1 333 2e-90
> Ahg937729 jgi|Araly1|937729|scaffold_501920.1
Length=821
Score = 1295 bits (701), Expect = 0.0
Identities = 779/818 (95%), Gaps = 0/818 (0%)
Strand=Plus/Plus
Query 116 TCATCTTCATCGAATTAGATGGCACCGGTGAAGAGGAGGGTGTTCAAGACAAATAATGAA 175
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 4 TCATCATCATCTAATTAGATGGCGCCGGTGAAGAGGAGGGTGTTCAAGACAAAGAATGAA 63
Query 176 ATGGCAGTGGAGCTGGCCAAATACACGGCTGATCTTTCCTCCAAATTTTGCAAAGAAAGA 235
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 64 ATGGCAGTGGAGCTAGCCAAATACACGGCTGATCTTTCCTCCAAATTCTGCAAAGAAAGA 123
Query 236 GGAGTTTTCACCGTTGTTCTCTCCGGCGGCGACCTCATAGCCTGGCTCTGGAAATTGTTA 295
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 124 GGAATTTTCACCGTCGTTCTCTCCGGCGGCGACCTCATCGCCTGGCTCTGGAAATTGTTA 183
Query 296 GAAGCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTTTGGGTCGACGAG 355
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 184 GAAGCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTCTGGGTCGACGAG 243
Query 356 AGGGTTTGTGCTTGGGATCATGCGGATAGCAACTATAAACTCGCTTACGATGGTTTTCTC 415
|||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||
Sbjct 244 AGGGTTTGTGCTTGGGATAACGTGGATAGCAACTATAAACTCGCTTACGACGGTTTTCTC 303
Query 416 TCCAAGGTTCCAGTTCCAGCTGAAAACATCTACGCTATCGATAACGGACTCGGGGCAGAA 475
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 TCCAAGGTTCCAATTCCAGCTGAAAACATCTACGCTATCGACAACGGACTCGGGGCAGAA 363
Query 476 GGCAACGCCGAGCTAGCAGCTGAAAGGTACGAGGAGTGCCTCAAACAAAAAGTGAACCAA 535
|||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 364 GGCAACGCTGAGCTAGCAGCTAAAAGGTACGAGGAGTGCCTCAAACAAAAGGTGAACCAG 423
Query 536 AACATAATCCGAACGTACAAATCTTCTGGTTTTCCACAGTTCGATCTTCAGCTTCTAGGT 595
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 424 AACATAATCCGAACGTACAAATCTTCTGGTTTTCCACAATTCGATCTTCAGCTTCTAGGA 483
Query 596 ATGGGACCGGACGGTCACATGGCGTCTCTATTCCCTGGACATGCTCAGATCAATGAGAAG 655
|||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||
Sbjct 484 ATGGGACCAGACGGTCACATGGCTTCTCTATTCCCGGGACATGATCAGATCAACGAGAAA 543
Query 656 GTGAAATGGGTCACATCTATAACCGATTCACCTAAGCCACCGTCAAAAAGGATCACATTG 715
||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 544 GTGAAATGGGTCACATCTATAACCGATTCACCTAAACCACCACCAAAAAGGATAACTTTT 603
Query 716 ACTTTACCGGTTATCAATTGTGCTTCCTATAATGTTATGGCCGTATGTGATAAAGAGCAG 775
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 ACTTTACCGGTTATCAATTGTGCTTCCTACAATGTTATGGCCGTATGTGATAAAGAGCAG 663
Query 776 GCTGATTCGGTTGCGGCTGCTCTTAATCATACCAAAGACTTACCAGCTGGTAGACTAACC 835
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 664 GCTGATTCGGTTGCGGCTGCTCTTACTCATACCAAAGACTTACCAGCCGGTAGACTAACC 723
Query 836 GCGGATGTTGAAGTGGTTTGGTTCCTTGACCAAGCTGCTGCGTCTAAACTCCCTCATGGC 895
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 724 GCGGATGTTGAAGTGGTTTGGTTCCTTGATCAAGCTGCTGCGTCTAAGCTCCCTCATGGC 783
Query 896 TGGTGCTCCATCCTTTGATTTAAACGTTTATGTTTTTG 933
||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGGTGCTCCATCCTTTGATTTAAACGTTTATGTTTTTG 821
> Ahg941993 jgi|Araly1|941993|scaffold_602537.1
Length=801
Score = 333 bits (180), Expect = 2e-90
Identities = 426/543 (78%), Gaps = 24/543 (4%)
Strand=Plus/Plus
Query 240 TTTTCACCGTTGTTCTCTCCGGCGGCGACCTCATAGCCTGGCTCTGGAAATTGTTAG-AA 298
||||||||||||||||||||||||| |||||||| | |||||||| || ||| | | ||
Sbjct 127 TTTTCACCGTTGTTCTCTCCGGCGGTGACCTCATTGATTGGCTCTGCAAGTTGGT-GCAA 185
Query 299 GCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTTTGGGTCGACGAGAGG 358
||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||
Sbjct 186 CCTCCTTATATTGATTCAATCGAATGGTCAAAGTGGCACGTCTTTTGGGTCGACGAGAGG 245
Query 359 GTTTGTGCTTGGGATCATGCGGATAGCAACTATAAACTCGCTTACG-ATGGTTTTCTCTC 417
|||||||| ||||| || | || || ||||| |||||||| | | | |||||||||||
Sbjct 246 GTTTGTGCATGGGAAGATCCAGACAGTAACTACAAACTCGCC-ATGGAGGGTTTTCTCTC 304
Query 418 CAAGGTTCC-AGTTCCAGCTGAA-AACATCTACGCTATCGATAACGGACTCGG-GGCAGA 474
|||||||| | |||| | | || ||||||||||| ||||| || | ||| || ||| |
Sbjct 305 TAAGGTTCCGA-TTCCGGAT-AAGAACATCTACGCGATCGACAA-GCACTGGGCGGCT-A 360
Query 475 A-GGCAACGCCGAGC--TAGCAGCTGAAAGGTACGAGGAGTGCCTCAAACAAAAAG-TGA 530
| || ||||| |||| | || || | | |||||||| || || ||| || | |||
Sbjct 361 ATGGTAACGCTGAGCACT-GC-GCGGCACTCTACGAGGAATGTCTTAAA-AATCTGGTGA 417
Query 531 ACCAAAACATAATCCGAACGTAC-AAATCTTCTGGTTTTCCACAGTTCGATCTTCAGCTT 589
| |||| ||||||| || | | ||| | || | ||| |||||||||| ||||||
Sbjct 418 AGGAAAAGATAATCCCAATAT-CGAAAAAGACAGGATATCCTGAGTTCGATCTACAGCTT 476
Query 590 CTAGGTATGGGACCGGACGGTCACATGGCGTCTCTATTCCCTGGAC-ATGCTCAGATCAA 648
||||| ||||| || || || |||||||||||||| ||||| || || | ||||||||
Sbjct 477 CTAGGGATGGGTCCTGATGGCCACATGGCGTCTCTCTTCCCAA-ACCATCCACAGATCAA 535
Query 649 TGAGAAGGTGAAATGGGTCACATCT-ATAACCGATTCACCTAAGCCACCGTCAAAAAGGA 707
||||||| |||||||||||| || || ||||| || || || ||||| |||| || |
Sbjct 536 TGAGAAGCAGAAATGGGTCAC-TCACATCACCGACTCTCCAAAACCACCACCAAAGAGAA 594
Query 708 TCACATTGACTTTACCGGTTATCAATTGTGCTTCCTATAATGTTATGGCCGTATGTGATA 767
||||||| ||||||||||| ||||| | ||||| || ||| |||||||| | ||||| |
Sbjct 595 TCACATTCACTTTACCGGTCATCAACTCTGCTTTGTACAATCTTATGGCCATTTGTGACA 654
Query 768 AAG 770
|||
Sbjct 655 AAG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5