BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49380.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323521 jgi|Araly1|323521|fgenesh1_pm.C_scaffold_5001065 1343 0.0
> Ahg323521 jgi|Araly1|323521|fgenesh1_pm.C_scaffold_5001065
Length=1074
Score = 1343 bits (727), Expect = 0.0
Identities = 969/1082 (90%), Gaps = 31/1082 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAAAACCGACGGAAGCTCATGGTTCACGGCCGTTAAGAATGTTTTCCGATCGCCG 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGAAAACCGGCGGAAGCTCATGGTTCACGGCCGTTAAGAATGTTTTCCGATCACCG 60
Query 61 GAGAAGTTAATCCCTAGAAGAATAAATCGTCGACAAGACAACGACCTCGTCGAAGAAGTA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GAGAAGAAAATCCCTAGAAGAATAAATCGTCGACAAGACAACGACCTCGTCGAAGAAGAA 120
Query 121 GAGGACGAACTACACCAACGACCGAAGAGAAGAAAAAGAAGATGGCTATTTAAGAAAGTT 180
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 GAGGACGAACAACACCAACGACCGAAGAGAAGAAAAAGAAGATGGCTATTCAAGAAAGAT 180
Query 181 TCTTCTGATCCTTGTGCAATAAACGTAGG-----A-AT---AAA---C-ACAAC-TT--C 224
||||||||| || ||||||| ||||||| | || ||| | |||| || |
Sbjct 181 TCTTCTGATTTTTCTGCAATAGACGTAGGAATACACATAAGAAACTCCGGCAACATTAAC 240
Query 225 -C-ACGGCTATTAACGCGATTGCCGCGGAGGAAACAGAGAAAACTGTTTCGCCGGCGGCC 282
| |||| | ||||||||||||| || ||||||||||||||||||| || |||||||||
Sbjct 241 TCAACGGATGTTAACGCGATTGCGGCTGAGGAAACAGAGAAAACTGCATCTCCGGCGGCC 300
Query 283 AAAGAAACCGTATTTTTCT-GTCGAACGTCTGTCTACCT-AAAGAGACACGTGGCTGCTA 340
|| |||||||| ||||| | | || | ||||||||||| ||| |||||| |||||||||
Sbjct 301 AAGGAAACCGTCTTTTT-TGGCCGGATATCTGTCTACCTCAAA-AGACACTTGGCTGCTA 358
Query 341 TTCTCATTCAGACAGCTTTCCGAGGATGCCTGGCAAGAACAGCGGTTAGGGCTCTAAAAG 400
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 359 TTCTCATTCAGACAGCTTTCCGAGGATGCCTGGCACGAACAGCGTTTAGGGCTCTACAAG 418
Query 401 GAGTTGTGAAACTACAAGCCCTAGTGAGAGGCCATAACGTTCGTAGAAGAACTAGCATTA 460
|||||||||||||||||||| ||||||||||||| | ||| |||||| || |||||||||
Sbjct 419 GAGTTGTGAAACTACAAGCCTTAGTGAGAGGCCACATCGTGCGTAGACGAGCTAGCATTA 478
Query 461 CTTTGCAACGGGTCCAGGCTTTGGTTCGGATTCAGGCTCTAGCTCTAG-ATCACCGGAAA 519
|||||| ||||| ||||||||||||| ||| ||||||| |||||||| || ||| ||||
Sbjct 479 CTTTGCTTCGGGTTCAGGCTTTGGTTCAGATCCAGGCTCGAGCTCTAGAAT-ACC-GAAA 536
Query 520 AA-ACTCACGACCAAGCTCGGGGACGAAATTTCCTACTCTCATGCTTTCTCTAAACAGAT 578
|| |||||| ||||| ||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct 537 AACACTCACCACCAATCTCGGCGACGAAACTGCCTTGTCTCATGCTTTCTCTAAACAGAT 596
Query 579 GTGGAGAACAATGGAAAGAGAAGCTCATAGTGAAAGTGAATTAGAGGACAAAAGACCGAG 638
||||| ||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 GTGGAAAACTACAGCGAGAGAAGTTCATAGTGAAAGTGAATTAGAGGACAAAAGACCGAG 656
Query 639 TAGATTAAACGGGTACGGTTATCAAGAAACCGGAAGGAGAATGTCAACCGATCAGGCTAT 698
|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 657 TAGATTAAACCGGTACGGTTACCAAGAAACCGGAAGAAGAATGTCAACCGATCAGGCTGT 716
Query 699 CGTTGAACCGGTCAAGATAGTCGAGATCGATAAGTATAATAATACGTACTCACACCACCA 758
|||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||
Sbjct 717 CGTTGAACCGGTCAAGATAGTCGAGATCGATACGTATAA-AA--CGTACTCACACCACCA 773
Query 759 ACAACTCAACGACCAGACGCCACGTGG-CAATTCTTTCGTCACACGGCAAGCCCATTCAA 817
||| ||||||||||||||||||||||| || | ||| ||||||| |||||| ||||||||
Sbjct 774 ACAGCTCAACGACCAGACGCCACGTGGACACT-CTTGCGTCACAAGGCAAGTCCATTCAA 832
Query 818 TTCCAAATTACATGTCTACCACTGCCTCAACCGTGGCTAGGTTCCGCCGACCACAAAGCG 877
| |||||||||||||||||||||||||||||| || |||| || ||||| ||||||||||
Sbjct 833 TACCAAATTACATGTCTACCACTGCCTCAACCATGTCTAGATTTCGCCGGCCACAAAGCG 892
Query 878 TACCAAAACAGAGATCAAACCGGACCTGTTTAGATAACAACGAACCAAGATTAAGATTGG 937
||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 893 TACCAAAGCAGAGATCAAACCGAACCGGTTTAGATAACAACGAACCAAGATTAACATTGG 952
Query 938 TTAGAAAGCGATTGTCATTTCACAATGATAATCCGCAATCGTACGGTTATATTGCCGGTG 997
|||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 953 TTAGAAAGCGGTTGTCATTTCACAATGGTAATCCGCAATCGCACGGTTATATTGCCGGTG 1012
Query 998 ATGGTTACTTTTGGTACGACATCGACAAGAGAACGAATGCTCACGAAGATTTTCAGTACT 1057
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1013 ATGGTTACTTTTTGTACGACATCGACAAGAGAACCAATGCTCACGAAGATTTTCAGTATT 1072
Query 1058 AA 1059
||
Sbjct 1073 AA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5