BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49390.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485298 jgi|Araly1|485298|fgenesh2_kg.5__1290__AT3G49390.2 2207 0.0
> Ahg485298 jgi|Araly1|485298|fgenesh2_kg.5__1290__AT3G49390.2
Length=1666
Score = 2207 bits (1195), Expect = 0.0
Identities = 1525/1672 (91%), Gaps = 72/1672 (4%)
Strand=Plus/Plus
Query 6 CTTCTATTCTAATCATCCCCTTGAATTTTCCAAGTTTTCTCCTTTTGTCTTCTCTAAC-T 64
||||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |
Sbjct 1 CTTCTATTCTAATCATCTCCTTGAATTTTCCAAGTTTTCTCCTTTTGTC-T-T-T-ACTT 56
Query 65 ATTTTCCCTTAAAATAAAAATCCAATTTTTCTTTGTTTCAGTCCTCTCTTCTG--CTCAT 122
|||||||||| ||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 57 ATTTTCCCTT-GAATAAAAATCCAACTTTTCTTTGTTTCAGTCCTCTCTTGTGCTCTCAT 115
Query 123 TGATCTTTTAATTAACTTTGATTCTCTCCGTTTATGGATT-A--A----C-C--ATT-T- 170
||||||||||||||| ||||||||||||||||||||| || | | | | ||| |
Sbjct 116 TGATCTTTTAATTAAGTTTGATTCTCTCCGTTTATGGCTTAACCATTTTCTCAAATTCTC 175
Query 171 GATC---G--AGATAACTCTCCA---AGAAATCGACTGAGTTCGTAACTTGTTGTTGTCT 222
|| | | | | | | |||||||||| ||||| |||| ||||||||||||
Sbjct 176 TTTCTAAGTTTGGTTGTTTTTGATTCAGAAATCGAC-GAGTTGGTAAGTTGTTGTTGTCT 234
Query 223 GATC-TTTTAAAGATTCAACCTTTTTTGGTCCGATCATGGCTGTTGCTGAGAATGCTGGT 281
|||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 235 GATCGTTATAAAGATTCCACC-TTTTTGGTCCGATCATGGCTGTTGCTGAGAATGCTGGT 293
Query 282 GTCAAAGTGGACTC-T--TCTGGTCAGAATTTAGACAACAACAACACTGCTGCTTCAGCT 338
|||||||||||||| | |||||||||||||||| ||||||||| ||| |||||||
Sbjct 294 GTCAAAGTGGACTCTTCGTCTGGTCAGAATTTAG---ACAACAACA---CTGATTCAGCT 347
Query 339 ACCGAGACGACAAAGCCGCCATGTCCTGATGATGATCAAAGCCCTAAATCTGACTCATCC 398
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 348 ACCGAGACG---AAGCCGCCATGTCCTGATGATGATCAGAGCCCTAAATCTGACTCATCG 404
Query 399 ACTCCTCTTACCATCGATTCGACTCCTGAAACTGACGATCGGATCAATGAGACTGCTCAA 458
| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 405 AATCCTCCTACCATCGATTCGACTCCAGAAACTGACGATCGGATCAATGAGACTGCTCAA 464
Query 459 AAGGTTCAGACTTTAAATGGGTTTAGTGGAAATGGTGAGAGAGATAACAATGGAGAGATC 518
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 465 GAGGGTCAGACTTTAAATGGGTTTAACAGAAATGGTGAGAGAGATAACAATGGAGAGATC 524
Query 519 AAAGATTTGGCTGATGCGTTTTCTAAGCTTAATCCGATGGCTCAGGAGTTTGTTCCTCCT 578
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 525 AAAGATTTGGCTGATGCTTTTTCTAAGCTTAATCCCATGGCTCAGGAGTTTGTTCCTCCT 584
Query 579 TCTCTTGCTCGAAGTCAATCTGGGGTTTTGAGAAATGGATTAGGGTTTACTAACAATTTT 638
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 585 TCTCTCGCTCGAAGTCAATCTGGGGTTTTCAGAAATGGATTAGGGTTTACTAACAATTTT 644
Query 639 GCAGCCCCACCTAAACTTGCTGATGGGAATGATCATTTTCCTAGAAGGAGAAGGAGTTTT 698
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 645 GCAGCCCCACCTAAACTTGCTGATGGGAATGATCATTTTCCTACAAGGAGAAGGAGTTTT 704
Query 699 GGCCAAGGGAAGCGAAGAATGAACAAAAGGACAAGCTTGGCTCAGAAGGATGATGTAATC 758
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 705 GGCCAAGGGAAGCGAAGAATTAACAAAAGAACAAGCTTGGCTCAGAAGGACGATGTAATC 764
Query 759 AGGAGAACTGTATATGTCTCTGACATCGACCAACAGGTTACAGAGGAGAACCTCGCAGGT 818
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 765 AGGAGAACTGTATATGTCTCCGACATTGACCAACAGGTTACCGAGGAGAACCTCGCAGGT 824
Query 819 GTCTTTATTAACTGTGGACAGGTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCTGTC 878
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 GTCTTTATTAATTGTGGACAGGTTGTTGATTGTCGTGTATGCGGTGACCCAAATTCTGTC 884
Query 879 CTTCGTTTCGCTTTCATTGAATTTACCAATGAAGAGGGAGCTAGAGCTGCTTTGAGCATG 938
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 885 CTTCGTTTTGCTTTCATTGAATTTACCAATGAAGAGGGAGCTAGGGCTGCTTTGAGCATG 944
Query 939 TCGGGTACTGTGCTAGGTTTTTACCCTCTTAAGGTTCTTCCTTCCAAAACAGCTATTGCT 998
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 945 TCGGGTACTGTGCTCGGTTTTTATCCTCTTAAGGTTCTTCCTTCCAAAACCGCTATTGCC 1004
Query 999 CCTGTTAACCCGACTTTTCTTCCACGATCTGAGGATGAGCGTGAGATGTGCGTTAGGACT 1058
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1005 CCTGTTAACCCAACTTTTCTTCCAAGATCTGAGGATGAGCGTGAGATGTGCGTTAGGACT 1064
Query 1059 GTTTACTGTACCAACATTGACAAGCGGATCACTCAAATTGACTTGAAAGGCTTCTTTGAA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GTTTACTGTACCAACATTGACAAGCGGATCACTCAAATTGACTTGAAAGGCTTCTTTGAA 1124
Query 1119 ATGCTTTGCGGGGAGGTTCATCGTCTGAGGCTTGGAGACTATCACCACCAAACCCGTATT 1178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1125 ATGCTTTGCGGGGAGGTTCATCGTCTGAGACTTGGAGACTATCACCACCAAACCCGTATT 1184
Query 1179 GCTTTTGTTGAGTTTGCGATGGCGGAAAGCGCAATTGCTGCGCTTCACTGCAGCGGTATT 1238
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1185 GCTTTTGTTGAGTTTGCGATGGCGGAAAGTGCAATTGCTGCGCTTCACTGCAGTGGTATT 1244
Query 1239 GTCTTGGGGGCACTCCCAATAAGGGTAAGTCCATCGAAGACACCAGTAAGGCCGCATTTT 1298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1245 GTCTTGGGGGCACTCCCAATAAGGGTAAGTCCATCAAAGACACCAGTAAGGCCGCACTTT 1304
Query 1299 CCCCGCGCTGAGTTCAAGTGAAACTC-TAGCCGGAGATCT-TAAAATTATATAGCAAACg 1356
||||||||||| ||||||||||| | | || | | | | | |||||||||||||||||
Sbjct 1305 CCCCGCGCTGATTTCAAGTGAAA-TGATCGC-GAAAAAATGTCAAATTATATAGCAAACG 1362
Query 1357 agagagagagagagaaagcagaagaaga--a-gtctaaagaagaagGTACTTGAGGCGTT 1413
||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1363 AGAGAGAGAGAGA-AA-GCAGAAGAAGATGAAGTCTAAAGAAGAAGGTACTTGAGGCGTT 1420
Query 1414 TTGTGTTTATATATAAAACTCTTTCTAGATTTATTTTAAGTTAATGCTTCGCGGTCGCAG 1473
||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1421 TTGTGTTTATATATAAA-CTCTTTTTAGATCTATTTTAAGTTA-TGCTTCGCGGTCGCAG 1478
Query 1474 AGCCTGCCCGGTATCTTTGAACAACTCAACAACTTTGGTCTAAACCTTTCTCCTTTCTTT 1533
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1479 AGCCTGCCCGGTATCTTTGAACAACTCAAGAACTTTGGTCTAAAC-TTTCTCCTTTCTAT 1537
Query 1534 AGTCTCCAAACACACAAAAAT--------TTG-ATTATTTTTGTTGTTGTTGAAAT--A- 1581
|||| ||||| ||| ||||| ||| ||||||||||||||||||||||| |
Sbjct 1538 AGTCACCAAAAACAAAAAAAAAAAAAAAATTGGATTATTTTTGTTGTTGTTGAAATTGAG 1597
Query 1582 ---CCCTTTGGATATTTTT--ATGACTTATTTAAGACATTTGGAGAAATTTT 1628
|||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 1598 TTACCCTTTGGATATTTTTTTATGAATTATTTAAGACATTTGGTGAAATTTT 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5