BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49400.1
Length=2788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485300 jgi|Araly1|485300|fgenesh2_kg.5__1292__AT3G49400.1 4359 0.0
> Ahg485300 jgi|Araly1|485300|fgenesh2_kg.5__1292__AT3G49400.1
Length=2797
Score = 4359 bits (2360), Expect = 0.0
Identities = 2664/2808 (95%), Gaps = 31/2808 (1%)
Strand=Plus/Plus
Query 1 ACTAGGGTTTCCGTACTGAATCAACTTCATCAGTTCGTTTCGTTGTCAAAAGCAAAGCAG 60
|||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||||
Sbjct 1 ACTAGGGTTTCCGTACTGAATCAAATTCATCAGTTCG--T--TTGTCCAAAGCAAAGCAG 56
Query 61 AGCAAG--TTTTATTTTCCCTCC---AAAATTCTAAGTTGATCTTC--AC---T-T-TTT 108
|||||| |||| |||||||||| ||||||| ||||||||||| || | | |||
Sbjct 57 AGCAAGTTTTTTTTTTTCCCTCCAAAAAAATTC--AGTTGATCTTCAAACGGATCTATTT 114
Query 109 GATGGCGTCGCGGTTTCAGGAAGCTTCACTGGTTACTTCACCGTCGTATCCTAACGCCGT 168
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 115 GATGGCGTCGCGGTTTCAGGAAGCTTCACTTGTTACTTCACCATCGTATCCTAACGCCGT 174
Query 169 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 234
Query 229 TCCGGCTTTGCCTACTGGCCCTCGTGGATTGATCACAATCTCTGACGCCGAGCTTTATCA 288
||||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 235 TCCGGCTTTGCCTTCTGGACCTCGTGGATTGATCACAATCTCTGACGCTGAGCCTTATCA 294
Query 289 GATTGGTCGTGTTCGCTCTCAAGATTTGCTAACTGGTGGACTCTTGCCTTCGAGTTTGAA 348
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 295 GATTGGTCGTGTTCGCTCTCAAGATTTGCTGACTGGTGGACTCTTACCTTCGAGTTTGAA 354
Query 349 GCGGGAAA-GAAGTCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCAA 407
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 GCGGGAAAGGAA-TCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCCA 413
Query 408 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 473
Query 468 CATATTCTGATTTCTGTGCTGAGTGGATTGAGATTGTTGATATATCTAAAATGCTTTATG 527
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 474 CATATTCTGATTTTTGTGCTGAGTGGATTGAGATTGTTGATGTATCTAAAATGCTTTATG 533
Query 528 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAAAAATCCTTCTACTTCATTATCTAAGG 587
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 534 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAACAATCCTTCTACTTCATTATCTAAGG 593
Query 588 ATCAAGTGGTAGAACATGACCATGAGGAGGATGAAAGGATTTCAAGTCTGAAGGCACGCA 647
||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 594 ATCAATTGGTAGAACATCACCATGAAGACGATGAAAGGATTTCAAGTCTGAAGGCACGCA 653
Query 648 AGCGAAGAAAAACAAGTGCAAATAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 707
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 654 AGCGAAGAAAAACAAGCGCAAACAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 713
Query 708 CATCATGTTCCAAGCAAGACAGTAAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 714 CATCATGTTCCAAGCAAGACAGTCAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 773
Query 768 AACAGGCAAGCAATGGCCAAGATCGTCGTTCCTTGCCTAAAGCTCTaaaaaaaTGCAGTC 827
||||||||||||||||||||||| ||| || |||||||||||||| ||||| || ||||
Sbjct 774 AACAGGCAAGCAATGGCCAAGATTGTCACTCTTTGCCTAAAGCTCTGAAAAAGTGTAGTC 833
Query 828 AAGAGATAAGTCC-GCAAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCATTCCGTT 886
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 AAGAGATAAGTCCAG-AAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCTTTCCGTA 892
Query 887 GCCTGGTCATCTCTTCTAAGATTCTCATCAGAAAGTTC-T-T-GTGGGAATATGTTAAGA 943
|||||||||||||| ||||||||||||||||||| ||| | | ||| |||||||||||||
Sbjct 893 GCCTGGTCATCTCTACTAAGATTCTCATCAGAAATTTCTTCTAGTGAGAATATGTTAAGA 952
Query 944 TTCTCTCTTTTGGCAATTGGTTCAAAGTCCGGGAGCGTTTCCATATGGAAAGTTCATGCA 1003
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 953 TTCTCGCTTTTGGCAATTGGTTCAAAGTCCGGTAGTGTTTCCATATGGAAAGTTCATGCA 1012
Query 1004 CCTGAATGCTATCACATTGAACGCAGC-AATGTATCTCCCATGGTGGAACTTAC-TGCTA 1061
||||||||||||||||||||||| | | |||||||||||||||||||||||| | |||||
Sbjct 1013 CCTGAATGCTATCACATTGAACGTA-CTAATGTATCTCCCATGGTGGAACTT-CATGCTA 1070
Query 1062 TAGTTCAGACCCATAGCTCATGGGTTTCAACAATGAGTTGGGGAATTTTTGGCTGTGATT 1121
|| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1071 TAATTCAGGCCCATAGCTCATGGGTTTCAACTATGAGTTGGGGAATTTTTGGCTGTGATT 1130
Query 1122 CTTCGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGTGATGGTAGTGTGAAAATTTGGA 1181
||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1131 CTTTGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGCGATGGTAGTGTAAAAATTTGGA 1190
Query 1182 TGAGCAACAAAGAAGACTTGCAAAATTCTGTGGAGGTCTATAAATCTTCATTCTTTCTAC 1241
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 1191 TGAGCAACAACGAAGACTTGCAAAAATCTGTGGATGTCTATAAATCTTCATTCTCTCTAT 1250
Query 1242 TAAAAGAGGTTGTAGCAGTGAATCCTGTTCAGGTTTCAACGCTTTCTTTTGTTGTAAGCA 1301
| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1251 TTAAACAGGTTGTAGCGGTGAATCCTGTTCAGGTTTCAACACTTTCTTTTGTTGTAAGCA 1310
Query 1302 ACCATTATAATGCAATGCACTTGGCAATCGGTAAAGGATCTGGTTCTTTCGAAGTATGGA 1361
| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1311 ATCATTATAATGCAATGCACTTGGCAATCGGCAAAGGCTCTGGTTCTTTTGAAGTATGGA 1370
Query 1362 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAACTAATGCTCATAACCAAG 1421
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1371 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAAGTAATGCTCATAACCAAG 1430
Query 1422 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCAGTCAGGATA 1481
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1431 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCATTCAGGATA 1490
Query 1482 ATTATGTCCGGAGCTGGATTTTATGTGAGAATGCCATCTCTGAAGTGCCAATTCCTGCAA 1541
|||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1491 ATTATGTCTTGAACTGGATTTTGTGTGAGAATACCATCTCTGAAGTGCCAATTCCTGCAA 1550
Query 1542 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTTCTATCATGCCTTGGTG 1601
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1551 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTCCTGTCATGCCTTGGTG 1610
Query 1602 TGGCATTGTCACCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1661
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGGCATTGTCCCCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1670
Query 1662 TGAATCCAATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1721
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGAATCCGATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1730
Query 1722 CACAACAATCTGGTGAGTCAGAAGATTCTACAGAGACGGTAACCGAAGCTATTCTGGGTT 1781
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 1731 CACAACAATCTGGTGAGTCAGAAGATTCTTCAGAGACGATAACCGAAGCTATTCTGGGAT 1790
Query 1782 TCTCAAAGAATGAATTCGCAAATTGGGAATCCAATATTCTCTGGTCGTTAAAAGAATTCA 1841
||||||| |||||||||||| ||||||||| ||| ||||||||||||| ||||||||||
Sbjct 1791 TCTCAAAAAATGAATTCGCATGTTGGGAATCTAATTTTCTCTGGTCGTTGAAAGAATTCA 1850
Query 1842 ACTATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1901
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AAGATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1910
Query 1902 AATCAATGCCAGAGTTTGTTGAATTAGTATTAACTAAATGGCTCTCTGTGTCATACCTTG 1961
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1911 AATCAATGCCAGAGTTTGTTGAATTGGTATTAACCAAATGGCTCTCTGTGTCATACCTCG 1970
Query 1962 GATTTCATGATGATATCTCCATGGAAGATCTCGTGCCAAAGATCACCAAACGCTTCTCTG 2021
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1971 GATTTCATGCTGATATCTCCATGGAAGATCTGGTGCCAAAGATCACCAAATGCTTCTCTG 2030
Query 2022 ATGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTAATGTTATCGG 2081
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2031 CTGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTTATGTTATCGG 2090
Query 2082 AACTCAAAACAGAAGAAATCAACAGAAAACTGCAAGGTCAGAGAACGAACGATGAAGGAG 2141
| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2091 AGCTCAAAACAGTGGAAATCAACAGAAAACTTCAAGGTCAGAGAACGAACGATGAAGAAG 2150
Query 2142 AAATTGATCTGTGGCTCAAACTGCTTCAAGAAAGTGAACGAGAACTCCGAGAAAGACTGG 2201
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2151 AAATTGATCTGTGGCTCAAACTGCTTGAAGAAAGTGAACGAGAACTCCGGGAAAGACTGG 2210
Query 2202 TTGGTCTCAGTTTCTCGGCTTATTTACTCGCTGAGTCATCTCAGGGTACTATTTCGCCTC 2261
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2211 TTGGTCTCAGTTTCTCGGCTTATCTACTCGCTGAGTCATCTCAGGGTACTCTTTCGCCTT 2270
Query 2262 CCTCTTGGAATTGGCGTCCAGCTGGATTGGCTCTGTTGCAACAATGGGTTGAGATAAATC 2321
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2271 CCTCTTGGAATTGGTGTCCAGCTGGATTGGCTCAGTTGCAACAATGGGTTGAGATAAATC 2330
Query 2322 GTGATATTGTCCATAGTCAGCTGGAAACACTTTCCTTAGAAGTAAAATCTAGTCGAACGA 2381
| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 2331 GCGATATTGTCCATAGTCAGCTGGAAACACTTTCCGTAGAAGTGAAATCTAGTCTAACGA 2390
Query 2382 GATCAAGTAATAGCACAGAAA-CTGCATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2440
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2391 GATCAAGTAATAGCACAGAAACCT-CATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2449
Query 2441 CCAGTAAATTTCCACTCAGCAGAGGAAGCCTTTTGCGAATCTTCGCACCaaaaaaaaaaG 2500
||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 2450 CCAGTCAATTTCCACTCAGCGGAGGAAGCCTTTTGCGAATCTCCGCACCAAAAAAAGAAG 2509
Query 2501 AAGAGCAAAGACAAAGAGAGATGTGATGAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2510 AAGAGCAAAGACAAAGAGAGATGTGATCAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2569
Query 2561 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2570 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2629
Query 2621 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCGTTCCCGAGTGATCTCAAATCACTT 2680
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2630 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCATTCCCGAGTGATCTCAAATCACTT 2689
Query 2681 CCAAAATCTTCCTTTAGCAAAGTTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2740
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2690 CCAAAATCCTCCTTTAGCAAAGCTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2749
Query 2741 TTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCCTCACCTGTGTGA 2788
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2750 CTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCTTCACCTGTGTGA 2797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105205256690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5