BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49400.1 Length=2788 Score E Sequences producing significant alignments: (Bits) Value Ahg485300 jgi|Araly1|485300|fgenesh2_kg.5__1292__AT3G49400.1 4359 0.0 > Ahg485300 jgi|Araly1|485300|fgenesh2_kg.5__1292__AT3G49400.1 Length=2797 Score = 4359 bits (2360), Expect = 0.0 Identities = 2664/2808 (95%), Gaps = 31/2808 (1%) Strand=Plus/Plus Query 1 ACTAGGGTTTCCGTACTGAATCAACTTCATCAGTTCGTTTCGTTGTCAAAAGCAAAGCAG 60 |||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||| Sbjct 1 ACTAGGGTTTCCGTACTGAATCAAATTCATCAGTTCG--T--TTGTCCAAAGCAAAGCAG 56 Query 61 AGCAAG--TTTTATTTTCCCTCC---AAAATTCTAAGTTGATCTTC--AC---T-T-TTT 108 |||||| |||| |||||||||| ||||||| ||||||||||| || | | ||| Sbjct 57 AGCAAGTTTTTTTTTTTCCCTCCAAAAAAATTC--AGTTGATCTTCAAACGGATCTATTT 114 Query 109 GATGGCGTCGCGGTTTCAGGAAGCTTCACTGGTTACTTCACCGTCGTATCCTAACGCCGT 168 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 115 GATGGCGTCGCGGTTTCAGGAAGCTTCACTTGTTACTTCACCATCGTATCCTAACGCCGT 174 Query 169 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 234 Query 229 TCCGGCTTTGCCTACTGGCCCTCGTGGATTGATCACAATCTCTGACGCCGAGCTTTATCA 288 ||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||| Sbjct 235 TCCGGCTTTGCCTTCTGGACCTCGTGGATTGATCACAATCTCTGACGCTGAGCCTTATCA 294 Query 289 GATTGGTCGTGTTCGCTCTCAAGATTTGCTAACTGGTGGACTCTTGCCTTCGAGTTTGAA 348 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 295 GATTGGTCGTGTTCGCTCTCAAGATTTGCTGACTGGTGGACTCTTACCTTCGAGTTTGAA 354 Query 349 GCGGGAAA-GAAGTCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCAA 407 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 355 GCGGGAAAGGAA-TCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCCA 413 Query 408 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 473 Query 468 CATATTCTGATTTCTGTGCTGAGTGGATTGAGATTGTTGATATATCTAAAATGCTTTATG 527 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 474 CATATTCTGATTTTTGTGCTGAGTGGATTGAGATTGTTGATGTATCTAAAATGCTTTATG 533 Query 528 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAAAAATCCTTCTACTTCATTATCTAAGG 587 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 534 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAACAATCCTTCTACTTCATTATCTAAGG 593 Query 588 ATCAAGTGGTAGAACATGACCATGAGGAGGATGAAAGGATTTCAAGTCTGAAGGCACGCA 647 ||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 594 ATCAATTGGTAGAACATCACCATGAAGACGATGAAAGGATTTCAAGTCTGAAGGCACGCA 653 Query 648 AGCGAAGAAAAACAAGTGCAAATAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 707 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 654 AGCGAAGAAAAACAAGCGCAAACAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 713 Query 708 CATCATGTTCCAAGCAAGACAGTAAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 767 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 714 CATCATGTTCCAAGCAAGACAGTCAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 773 Query 768 AACAGGCAAGCAATGGCCAAGATCGTCGTTCCTTGCCTAAAGCTCTaaaaaaaTGCAGTC 827 ||||||||||||||||||||||| ||| || |||||||||||||| ||||| || |||| Sbjct 774 AACAGGCAAGCAATGGCCAAGATTGTCACTCTTTGCCTAAAGCTCTGAAAAAGTGTAGTC 833 Query 828 AAGAGATAAGTCC-GCAAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCATTCCGTT 886 ||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| Sbjct 834 AAGAGATAAGTCCAG-AAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCTTTCCGTA 892 Query 887 GCCTGGTCATCTCTTCTAAGATTCTCATCAGAAAGTTC-T-T-GTGGGAATATGTTAAGA 943 |||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||| Sbjct 893 GCCTGGTCATCTCTACTAAGATTCTCATCAGAAATTTCTTCTAGTGAGAATATGTTAAGA 952 Query 944 TTCTCTCTTTTGGCAATTGGTTCAAAGTCCGGGAGCGTTTCCATATGGAAAGTTCATGCA 1003 ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 953 TTCTCGCTTTTGGCAATTGGTTCAAAGTCCGGTAGTGTTTCCATATGGAAAGTTCATGCA 1012 Query 1004 CCTGAATGCTATCACATTGAACGCAGC-AATGTATCTCCCATGGTGGAACTTAC-TGCTA 1061 ||||||||||||||||||||||| | | |||||||||||||||||||||||| | ||||| Sbjct 1013 CCTGAATGCTATCACATTGAACGTA-CTAATGTATCTCCCATGGTGGAACTT-CATGCTA 1070 Query 1062 TAGTTCAGACCCATAGCTCATGGGTTTCAACAATGAGTTGGGGAATTTTTGGCTGTGATT 1121 || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1071 TAATTCAGGCCCATAGCTCATGGGTTTCAACTATGAGTTGGGGAATTTTTGGCTGTGATT 1130 Query 1122 CTTCGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGTGATGGTAGTGTGAAAATTTGGA 1181 ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1131 CTTTGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGCGATGGTAGTGTAAAAATTTGGA 1190 Query 1182 TGAGCAACAAAGAAGACTTGCAAAATTCTGTGGAGGTCTATAAATCTTCATTCTTTCTAC 1241 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||| Sbjct 1191 TGAGCAACAACGAAGACTTGCAAAAATCTGTGGATGTCTATAAATCTTCATTCTCTCTAT 1250 Query 1242 TAAAAGAGGTTGTAGCAGTGAATCCTGTTCAGGTTTCAACGCTTTCTTTTGTTGTAAGCA 1301 | ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1251 TTAAACAGGTTGTAGCGGTGAATCCTGTTCAGGTTTCAACACTTTCTTTTGTTGTAAGCA 1310 Query 1302 ACCATTATAATGCAATGCACTTGGCAATCGGTAAAGGATCTGGTTCTTTCGAAGTATGGA 1361 | ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 1311 ATCATTATAATGCAATGCACTTGGCAATCGGCAAAGGCTCTGGTTCTTTTGAAGTATGGA 1370 Query 1362 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAACTAATGCTCATAACCAAG 1421 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1371 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAAGTAATGCTCATAACCAAG 1430 Query 1422 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCAGTCAGGATA 1481 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1431 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCATTCAGGATA 1490 Query 1482 ATTATGTCCGGAGCTGGATTTTATGTGAGAATGCCATCTCTGAAGTGCCAATTCCTGCAA 1541 |||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1491 ATTATGTCTTGAACTGGATTTTGTGTGAGAATACCATCTCTGAAGTGCCAATTCCTGCAA 1550 Query 1542 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTTCTATCATGCCTTGGTG 1601 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1551 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTCCTGTCATGCCTTGGTG 1610 Query 1602 TGGCATTGTCACCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1661 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 TGGCATTGTCCCCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1670 Query 1662 TGAATCCAATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1721 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 TGAATCCGATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1730 Query 1722 CACAACAATCTGGTGAGTCAGAAGATTCTACAGAGACGGTAACCGAAGCTATTCTGGGTT 1781 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | Sbjct 1731 CACAACAATCTGGTGAGTCAGAAGATTCTTCAGAGACGATAACCGAAGCTATTCTGGGAT 1790 Query 1782 TCTCAAAGAATGAATTCGCAAATTGGGAATCCAATATTCTCTGGTCGTTAAAAGAATTCA 1841 ||||||| |||||||||||| ||||||||| ||| ||||||||||||| |||||||||| Sbjct 1791 TCTCAAAAAATGAATTCGCATGTTGGGAATCTAATTTTCTCTGGTCGTTGAAAGAATTCA 1850 Query 1842 ACTATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1901 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1851 AAGATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1910 Query 1902 AATCAATGCCAGAGTTTGTTGAATTAGTATTAACTAAATGGCTCTCTGTGTCATACCTTG 1961 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 1911 AATCAATGCCAGAGTTTGTTGAATTGGTATTAACCAAATGGCTCTCTGTGTCATACCTCG 1970 Query 1962 GATTTCATGATGATATCTCCATGGAAGATCTCGTGCCAAAGATCACCAAACGCTTCTCTG 2021 ||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1971 GATTTCATGCTGATATCTCCATGGAAGATCTGGTGCCAAAGATCACCAAATGCTTCTCTG 2030 Query 2022 ATGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTAATGTTATCGG 2081 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2031 CTGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTTATGTTATCGG 2090 Query 2082 AACTCAAAACAGAAGAAATCAACAGAAAACTGCAAGGTCAGAGAACGAACGATGAAGGAG 2141 | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 2091 AGCTCAAAACAGTGGAAATCAACAGAAAACTTCAAGGTCAGAGAACGAACGATGAAGAAG 2150 Query 2142 AAATTGATCTGTGGCTCAAACTGCTTCAAGAAAGTGAACGAGAACTCCGAGAAAGACTGG 2201 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 2151 AAATTGATCTGTGGCTCAAACTGCTTGAAGAAAGTGAACGAGAACTCCGGGAAAGACTGG 2210 Query 2202 TTGGTCTCAGTTTCTCGGCTTATTTACTCGCTGAGTCATCTCAGGGTACTATTTCGCCTC 2261 ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 2211 TTGGTCTCAGTTTCTCGGCTTATCTACTCGCTGAGTCATCTCAGGGTACTCTTTCGCCTT 2270 Query 2262 CCTCTTGGAATTGGCGTCCAGCTGGATTGGCTCTGTTGCAACAATGGGTTGAGATAAATC 2321 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2271 CCTCTTGGAATTGGTGTCCAGCTGGATTGGCTCAGTTGCAACAATGGGTTGAGATAAATC 2330 Query 2322 GTGATATTGTCCATAGTCAGCTGGAAACACTTTCCTTAGAAGTAAAATCTAGTCGAACGA 2381 | ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct 2331 GCGATATTGTCCATAGTCAGCTGGAAACACTTTCCGTAGAAGTGAAATCTAGTCTAACGA 2390 Query 2382 GATCAAGTAATAGCACAGAAA-CTGCATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2440 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 2391 GATCAAGTAATAGCACAGAAACCT-CATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2449 Query 2441 CCAGTAAATTTCCACTCAGCAGAGGAAGCCTTTTGCGAATCTTCGCACCaaaaaaaaaaG 2500 ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 2450 CCAGTCAATTTCCACTCAGCGGAGGAAGCCTTTTGCGAATCTCCGCACCAAAAAAAGAAG 2509 Query 2501 AAGAGCAAAGACAAAGAGAGATGTGATGAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2560 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2510 AAGAGCAAAGACAAAGAGAGATGTGATCAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2569 Query 2561 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2570 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2629 Query 2621 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCGTTCCCGAGTGATCTCAAATCACTT 2680 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2630 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCATTCCCGAGTGATCTCAAATCACTT 2689 Query 2681 CCAAAATCTTCCTTTAGCAAAGTTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2740 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2690 CCAAAATCCTCCTTTAGCAAAGCTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2749 Query 2741 TTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCCTCACCTGTGTGA 2788 |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2750 CTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCTTCACCTGTGTGA 2797 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105205256690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5