BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49410.1
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485301 jgi|Araly1|485301|fgenesh2_kg.5__1293__AT3G49410.1 2747 0.0
Ahg326738 jgi|Araly1|326738|fgenesh1_pm.C_scaffold_6001958 1197 0.0
> Ahg485301 jgi|Araly1|485301|fgenesh2_kg.5__1293__AT3G49410.1
Length=1882
Score = 2747 bits (1487), Expect = 0.0
Identities = 1712/1817 (94%), Gaps = 30/1817 (2%)
Strand=Plus/Plus
Query 1 GCCGTCGCCGATGTCGGGAAACCGAAGAATTTGAGGCaaaaaaaaTTC--GTATTTCCGA 58
|||||||||||||||||||||| |||||| ||||||| ||||||||| | ||| ||
Sbjct 1 GCCGTCGCCGATGTCGGGAAACAGAAGAACTTGAGGC--AAAAAATTCTTGAATTAGAGA 58
Query 59 AGAGAGTAATCTCTGGAAAGAATCAATGGGAATTATAGAAGAAGGAACAATCTCAGGTAC 118
| ||||||| || ||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 59 AAAGAGTAAACTTTGGGAAGAAACAATGGGAATCATAGAAGAAGGAACAATCTCAGGTAC 118
Query 119 CTTGCCAAGCAAGGAGGCGTTTGTAGTACACTTCCCTGGTTACCCATCTTCTATTTCTCG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 CTTGCCAAGCAAGGAGGCGTTTGTAGTACACTTCCCTGGTTACCCATCTTCTATTTCCCG 178
Query 179 AGCTATTGAAACACTTGGAGGTATCCAAGGAATTACACAAGCAAGGGAATCAATTTCAAA 238
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 AGCCATTGAAACACTTGGAGGTATCCAAGGAATTTCACAAGCAAGGGAATCAATTTCAAA 238
Query 239 TAAGCTTGAGCTACGGTTT-CGGCCTGAAGATCCTTATGCACATCCTGCATTGGGAGAAC 297
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 TAAGCTTGAGCTGC-GTTTCCGGCCTGAAGATCCTTATGCACATCCTGCATTGGGTGAAC 297
Query 298 AACGTCCTTG-TAGTGGTTTTTTGTTAAGAATTTCTAAGCAGGATATCAAGAAACCTGAA 356
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACGTCCTTGCT-GTGGTTTTTTGTTAAGAATTTCTAAGCAGGATATCAAGAAACCTGAA 356
Query 357 AGTCAGTCTGTTCTTGACACTAGTAGGGATGTATGTTTAGAGGAAGCTAGTCCAGTTCTA 416
|||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 357 AGTCAGCCTGTTCTTGCCACTAGTAGTGATGTATGTTTAGAGGAAGCTAGTACAGTTCTA 416
Query 417 TGTGCAGATATCGTAGCTCGTTTGTCTGAATCGTTTCACTTTGATGGCATGGCTGACTAT 476
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 417 TGTGCAGATATCATAGCTCGTGTGTCTGAATCGTTTCACTTTGATGGCATGGCTGATTAT 476
Query 477 CAGCATGTTATTCCTATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAGTGGATGGAT 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAGCATGTTATTCCAATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAGTGGATGGAT 536
Query 537 GTGGATCCCCTTACAGGAAAAAGTGATTTGATGGGCCTGGCTGATGAAGATGTAATGATG 596
|| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 537 GTTGATTCCCTTACAGGAAACAGTGATTTGATGGGCCTGGCTGATGAAGATGTGATGATG 596
Query 597 TTATTGCCACAGTTCTTTGCACCCAAAGATATACCGGACAATGTGGCGTTGAAACCTCCG 656
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 597 TTATTGCCACAGTTCTTTGCACCCAAAGATATACCAGACAATGTGGCGTTGAAACCTCCG 656
Query 657 GCGACATCTGGTCCCAAGAAGAAAGATGATGCAGCGACTCAGAACTTTTATGAGATTGAT 716
|| ||||||||||| || |||||||||||||| || ||||||||||||||||||||||||
Sbjct 657 GCAACATCTGGTCCTAAAAAGAAAGATGATGCGGCAACTCAGAACTTTTATGAGATTGAT 716
Query 717 GTTGGCCCAGTGTTTGCAATTGATTTCAGCGTCAAAGAGATCCCAAAGAAACTGAAGTGG 776
||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 717 GTTGGCCCAGTATTTGCAATTGATTTCA--GT-------ATCCCAAAGAAACTGAAGTGG 767
Query 777 GAAGACTTTGTTTCTCGCAGCTCCAACCACTGGCAATGGCAGGTAGCAGTGTCTGCATTG 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 768 GAAGACTTTGTTTCTCGCAGCTCCAACCACTGGCAATGGCAGGTATCAGTGTCTGCATTG 827
Query 837 TTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTTGTTCAACGACTACTTGATAAAGGT 896
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 828 TTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTAGTTCAACGACTACTTGATAAAGGT 887
Query 897 CTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGAGCTGCATATTATTTCTCC 956
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 888 CTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGGGCTGCGTATTATTTCTCC 947
Query 957 AGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAATGATCCTGAG 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 948 AGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAATGATCCTGCG 1007
Query 1017 TCTCGTGTATATCAGAGAATGGAATTCAGGGTTCCTCCTGAATTAC-GAGGTTATTGTGA 1075
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1008 TCTCGTGTATATCAGAGAATGGAATTCAGGGTTCCTCCTGAATTACGGA-GTTATTGTGA 1066
Query 1076 TGCCAATGCAACTAACAACTCAAAGCCAAGCTGGAACGACATTTGTGCTTTTAAGTTATT 1135
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TGCCAATGCAACTAACAGCTCAAAGCCAAGCTGGAACGACATTTGTGCTTTTAAGTTATT 1126
Query 1136 TCCTTTTAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTGACGACGAGTACATCCAGCG 1195
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TCCTTTCAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTGACGACGAGTACATCCAGCG 1186
Query 1196 AGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGTCATAAATCAGGATGGTTTTCAGA 1255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1187 AGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGCCATAAATCAGGATGGTTTTCTGA 1246
Query 1256 AGC-CATGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGTTTGTGTCTGTGTTTCCTG 1314
||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1247 AGCTC-TGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGTTTGTGTCTGTCTTCCCTG 1305
Query 1315 AGACAGGTTTCGAAGATGTATTTAAATCCATCCAAGAAGAATTTGAGAGATCAGAAAAAG 1374
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1306 AGCCAGGTTTCGAAGATGTATTTAAATCCATTCAAGAAGAATTTGAGAGGTCAGAAAAAG 1365
Query 1375 TACAAATTCAGAAAGAGACACTTAAACCATCTTTAGTGAAGCACCGGGAGGCAACTAAAG 1434
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TACAAAGTCAGAAAGAGACACTTAAACCATCTTTAGTGAAGCACCGGGAGGCAACTAAAA 1425
Query 1435 GCTCTGAAGATATGGAAACGTT-TAAAAGCGTAAACGAAAATGTTGATGCTAATGTTAat 1493
|||||||||| ||||||| || |||||| ||||||||| |||||||||||||||||||
Sbjct 1426 GCTCTGAAGACATGGAAA-ATTGTAAAAGTGTAAACGAAGATGTTGATGCTAATGTTAAC 1484
Query 1494 gaggatggagaagatgaaaacctggatgacg-a-a-gat---gaagatgaagaagaagaa 1547
||||||||||| |||||||| |||||||||| | | ||| ||||||||||||||||||
Sbjct 1485 GAGGATGGAGATGATGAAAATCTGGATGACGAAGATGATGAAGAAGATGAAGAAGAAGAA 1544
Query 1548 gaagaaCTCGATATGGCTGCAGGAGACAATGAGATATCTCTTGATTCCCATGGATATCTT 1607
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1545 GAAGAAGTCGATATGGCTGCAGGAGACAATGAGATATCTCTCGGTTCCCATGGATATCTT 1604
Query 1608 GATACTGAGAACAGCTCCAGGACGTACCTTCAAGGCTTGTTTGATAGTTTTCCATCGAGT 1667
|||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||
Sbjct 1605 GATACTGAGAACAGCTCCAGGACGTATCTGCAAGGCTTGTTCGATAGTTTTCCAACCAGT 1664
Query 1668 GAACCTAATTTATATGGAGACTTTGCTGTTGATGATGGGAGTGATGGAGAGTTTCAGATA 1727
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GAACCTGGTTTATATGGAGACTTTGCTGTTGATGATGGGAGTGATGGAGAGTTTCAGATA 1724
Query 1728 TACGAGGAAGAATCTGAGGGATTGTATTCCATtgatgatgaccacaatgatgacgatgaa 1787
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1725 TACGAGGAAGAATCTGAGGGATTGTATTCCATTGATGATGATCATAATGATGACGACGAC 1784
Query 1788 gaagaggatga-tgatg 1803
|| || ||||| |||||
Sbjct 1785 GATGATGATGACTGATG 1801
> Ahg326738 jgi|Araly1|326738|fgenesh1_pm.C_scaffold_6001958
Length=1668
Score = 1197 bits (648), Expect = 0.0
Identities = 1160/1397 (83%), Gaps = 76/1397 (5%)
Strand=Plus/Plus
Query 84 ATGGGAATTATAGAAGAA-GGAACAATCTCAGGTACCTTGCCAAGCAAGGAGGCGTTTGT 142
|||||||| || ||| || |||||||| || |||| |||||| |||||||||||||||||
Sbjct 1 ATGGGAATCATTGAA-AACGGAACAATATCGGGTAACTTGCCGAGCAAGGAGGCGTTTGT 59
Query 143 AGTACACT-TCCCTGGTTACCCATCTTCTATTTCTCGAGCTATT-GAAACACTTGGAGGT 200
|| |||| | ||||| |||||||| |||||||| |||||| || || || ||||| ||
Sbjct 60 GGTTCACTAT-CCTGGCTACCCATCATCTATTTCCCGAGCT-TTGGAGACTCTTGGGGGA 117
Query 201 ATCCAAGGAATTACACAA--GCAAGGGAATCAATTTCAAATAAGCTTGAGCTACGGTTT- 257
|||||||| | | ||||| ||||| |||| ||| ||||| ||||||||||| | |||
Sbjct 118 ATCCAAGGGA-T-CACAACCGCAAGAGAATTAATGTCAAACAAGCTTGAGCTTC-ATTTC 174
Query 258 CGGCCTGAAGATCCTTATGCACATCCTG-CATTGGGAGAACAACGTCCTTGT-AGTGGTT 315
|| |||||||| |||||||||||||||| | ||||||||||||||||||||| | |||||
Sbjct 175 CGCCCTGAAGACCCTTATGCACATCCTGTC-TTGGGAGAACAACGTCCTTGTCA-TGGTT 232
Query 316 TTTTGTTAAGAATTTCTAAGCAGGAT-ATCAAG-AA-A-------CCTGAAAGTCAGTCT 365
|| |||||| |||||| ||| ||| | | ||| || | ||||||||||| ||
Sbjct 233 TTCTGTTAAAAATTTCGAAGGAGG-TCGTTAAGAAAGATTCTCTGCCTGAAAGTCAACCT 291
Query 366 GTTCTTGACACTAGTAGGGATGTATGTTTA-GAGGAAGCTAGT-CCAGTTCTATGTGCAG 423
||||||| |||||| | ||| ||| ||| | |||| | | |||| || ||||| |
Sbjct 292 GTTCTTGCCACTAGCA---ATGCATGCTTACCA-GAAGAT-TTCCCAGCCCTGTGTGCTG 346
Query 424 ATATCGTAGCTCGTTTGTCTGAATCGT-TTCACTTTGATGGCATGGCTGACTATCAGCAT 482
|||| ||||||||| |||||||||||| || |||||||||||||| ||||| ||||||
Sbjct 347 ATATTGTAGCTCGTGTGTCTGAATCGTATT-GTTTTGATGGCATGGCCGACTACCAGCAT 405
Query 483 GTTA-TTCCTATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAGTGGATGGATGTGGA 541
| || ||||||||||||| || ||||| |||||||| |||||||| |||||||| ||| |
Sbjct 406 G-TAGTTCCTATTCACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAA 464
Query 542 -TCCCCTTACAGGAAAAAGTGATTTGATGGGCCTGGCTGATGAAGATGTAATGATGTTAT 600
| | ||| ||||||||| ||| | ||| | |||||||||||||||||||||||||||
Sbjct 465 GT-CACTTGCAGGAAAAAACGATCTAATGAACATGGCTGATGAAGATGTAATGATGTTAT 523
Query 601 TGCCACAGTTCTTTGCACCCAAAGATATACCGGACAA-TGTGGCGTTGAAACCTCCGGCG 659
|||||||||||||| ||||||||||||| || ||||| | ||| | ||| || ||| |
Sbjct 524 TGCCACAGTTCTTTTCACCCAAAGATATGCCAGACAACT-TGGTGCTGAGACTTCCAGTA 582
Query 660 ACATCTGGTCCC-AAGAAGAAAGATGATGCAGC-GACTCAGAACT-TTTATGAGATTGAT 716
||||| | ||| || ||||||||||| | | | |||||||| | |||||||||| |||
Sbjct 583 ACATCAAG-CCCAAAAAAGAAAGATGA-GGAACTAACTCAGAA-TCTTTATGAGATAGAT 639
Query 717 GTTGGCCCAGTGTTTGCAATTGATTTCAGCGTCAAAGAGATCCCAAAGAAACTGAAGTGG 776
|||||||||| |||||||||||||||| || ||||| |||| | | || |||
Sbjct 640 ATTGGCCCAGTATTTGCAATTGATTTCA--GT-------ATCCCGAAGATATTAAAATGG 690
Query 777 GAAGACTTTGTT-TCTCGCAGCTCCAACCACTGGCAATGGCAGGTAGCAGTGTCTGCATT 835
||||||||| || | || |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 691 GAAGACTTTATTGT-TCCCAGCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATT 749
Query 836 GTTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTTGTTCAACGACTACTTGATAAAGG 895
|||||| ||||| ||| | |||||||| ||||| | || ||||||||||||||||||||
Sbjct 750 GTTTGAAGAGCGACCTGTGTGGACAAGAGATTCCATAGTCCAACGACTACTTGATAAAGG 809
Query 896 TCTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGAGCTGCATATTATTTCTC 955
||||||||| |||||||||||| ||||||||||||| || || |||||||||||||| ||
Sbjct 810 TCTTAAATGCACACATCATATGCTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTTTC 869
Query 956 CAGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAATGATCCTGA 1015
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 870 GGGTGGTCCATTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGA 929
Query 1016 GTCTCGTGTATATC-AGAGAATGGAATTCAGGGTTCCTCCTGAATTACGAGG-TTATTGT 1073
||||| |||| || |||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 930 ATCTCGCGTAT-TCCAGAGAATGGAATTCAGGGTTCCACCTGAATTAA-AGGGTTATTGT 987
Query 1074 GATGCCAATGCAACTAACAACTCAAAGCCAAGCTGGAACGACATTTGTGCTTTTAA-GTT 1132
||| |||||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||
Sbjct 988 GATTCCAATGCAACTAACAAGTCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGT- 1046
Query 1133 ATTTCCTTTTAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTGACGACGAGTACATCCA 1192
||||||||| || |||||||| ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 1047 ATTTCCTTTCAAGTGCCAAACATTTCTACAGTTATTCGAACTTGACGATGAGTACATTCA 1106
Query 1193 GCGAGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGTCATAAATCAGGATGGTTTTC 1252
| |||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||
Sbjct 1107 ACAAGAGATAAGAAAGCCTCCCAAGCAGACTACTTGTAATTATAAAACAGGATGGTTTTC 1166
Query 1253 AGAAGC-CATGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGTTTGTGTCTGTGTTTC 1311
||||| | ||||||| | ||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 1167 TGAAGCGC-TGCTTGACAATTTGAGACTTCGTGTAGCTGTGAGGTATGTATCTGTGTTTC 1225
Query 1312 CTGAGACAGGTTTCGAAGATGTATTTAAATCCATCCAAGAAGAATTTGAGAGATCAGAAA 1371
| ||| ||||||| ||||| || |||||||| || |||||||| |||||||| |||||||
Sbjct 1226 CGGAGCCAGGTTTTGAAGACGTTTTTAAATCTATTCAAGAAGAGTTTGAGAGGTCAGAAA 1285
Query 1372 AAGTACA--AATTCAGAAAGA-GACACTTAAACCATCTTTA-GTGAAGCACCGGGAGGCA 1427
| | ||| |||||||||||| | |||| ||||||| | | | ||| |||| ||| ||
Sbjct 1286 A-G-ACACGAATTCAGAAAGATG-CACTGAAACCATATCAACG-GAATCACCAGGAAACA 1341
Query 1428 ACTAAAGGCTCTGAAGA 1444
|||||| | ||||||
Sbjct 1342 TCTAAAGA-TATGAAGA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74809241180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5