BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49430.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937735 jgi|Araly1|937735|scaffold_501926.1 1500 0.0
> Ahg937735 jgi|Araly1|937735|scaffold_501926.1
Length=946
Score = 1500 bits (812), Expect = 0.0
Identities = 906/949 (95%), Gaps = 15/949 (2%)
Strand=Plus/Plus
Query 176 TTTTAACCTTTGCAAACAATGAGTGGGCGATTTTCTCGGTCAATCTATGTTGGTAACTTG 235
|||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3 TTTTAACCTTCGGAAACAATGAGTGGGCGTTTTTCTCGGTCAATCTATGTTGGTAACTTG 62
Query 236 CCCGGTGACATTAGGGAACATGAGATTGAAGATATCTTTTACAAGTATGGCCGCATTGTC 295
|| ||||||||||| || ||||||||||||||| |||||||||||||||| || ||||||
Sbjct 63 CCTGGTGACATTAGAGAGCATGAGATTGAAGATCTCTTTTACAAGTATGGGCGTATTGTC 122
Query 296 GATATTGAATTGAAGGTTCCACCTCGGCCTCCATGTTATTGCTTTGTTGAGTTTGAGCAT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GATATTGAATTGAAGGTTCCACCTCGGCCTCCATGTTATTGCTTTGTTGAGTTTGAGCAT 182
Query 356 TCTCGGGATGCTGAAGATGCCATCAAGGGCCGTGATGGCTATAATTTGGATGGCTGTCGC 415
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 183 TCTCGGGATGCCGAAGATGCCATCAAGGGCCGTGATGGCTATAACTTCGATGGCTGTCGC 242
Query 416 TTGAGGGTTGAGCTTGCACATGGTGGTCGAGGACAGTCTTCAAGTGATCGTCgtggtggc 475
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TTGAGGGTTGAGCTTGCCCATGGTGGTCGAGGACAGTCTTCAAGTGATCGTCGTGGTGGC 302
Query 476 tacggtggtggt---ggcagcggctatggtggtggaggtggtggtggtggATCAGCTCGG 532
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 TACGGTGGTGGTGGCGGCGGCGGCTATGGTGGTGGAGGTGGTGGTGGGGGATCAGCTCGG 362
Query 533 TTTGGCGTCTCACGACACTCTGAATTCCGAGTTATTGTACGTGGGCTCCCATCATCTGCT 592
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 363 TTTGGCGTCTCACGACACTCTGAATTCCGAGTTATTGTGCGTGGGCTCCCATCATCTGCT 422
Query 593 TCATGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTGTGCTTTGCTGAGGTG 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCATGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTGTGCTTTGCTGAGGTC 482
Query 653 ACTCGAGACAGTGATGGAACTTATGGTGTTGTCGACTACACCAATTATGATGACATGAAG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ACTCGAGACAGTGATGGAACTTATGGTGTTGTCGACTACACCAATTATGATGACATGAAG 542
Query 713 TATGCAATAAGGAAACTTGATGACACAGAGTTCAGAAACCCCTGGGCTAGAGGTTTTATC 772
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TATGCTATAAGGAAACTTGATGACACAGAGTTCAGAAACCCCTGGGCTAGAGGTTTTATC 602
Query 773 CGGGTTAAGAAATATGAAAGCTCCCGATCaagaagcagaagcccaagcagaagcagaagc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CGGGTTAAGAAATATGAAAGCTCCCGATCAAGAAGCAGAAGCCCAAGCAGAAGCAGAAGC 662
Query 833 agaagcagaag------TCGAAGTCGTAGCCGAGGCCGTGGTCGCAGCCATAGCCGCAGT 886
||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 663 AGAAGCAGAAGCAGAAGTCGAAGTCGTAGCCGAGGCCGTGGTCGCAGCCGTAGCCGCAGC 722
Query 887 CGCAGCCTTAGCAGGAGCAAGAGCCCAAGGAAGGATCTGAGTAAATCACCAAGGCGATCC 946
|||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 723 CGCAGCCTTAGCCGAAGCAAGAGCCCAAGGAAGGATCTGAGTAAATCACCAAAACGATCC 782
Query 947 CTTTCCAGATCGATTTCAAAATCTAGATCGCCATCGCCCGACAAGAAGAAGAGTCCCCCC 1006
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 783 CTTTCCAGATCGATTTCAAAATCTAGATCGCCATCTCCCGACAAGAAGAAGAGTCCCCCC 842
Query 1007 AGGGCAATGTCGAGATCAAAGTCCAGGTCCAGGTCCAGATCGAGGTCTCCGTCCAAATCT 1066
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 843 AGGGCAATGTCGAGATCAAGGTCCAGGTCCAGGTCCAG---G---TCTCCGTCCAAATCT 896
Query 1067 CCTCCCAAGGTTCGCGAAGGCAGTGTGTGATTTTGTTAAGCGGTGAAAA 1115
|||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 897 CCTCCCAAGGTTCGTGAAGGCAGTGTGTGATTTTGTTAGGCGGTGAAAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5