BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49450.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937743 jgi|Araly1|937743|scaffold_501934.1 1419 0.0
Ahg937752 jgi|Araly1|937752|scaffold_501943.1 436 1e-121
Ahg932493 jgi|Araly1|932493|scaffold_400481.1 52.8 6e-06
> Ahg937743 jgi|Araly1|937743|scaffold_501934.1
Length=1234
Score = 1419 bits (768), Expect = 0.0
Identities = 1066/1206 (88%), Gaps = 36/1206 (3%)
Strand=Plus/Plus
Query 1 ATGATGAAAAAACGGAAGAGGAAAGTCTCCAAGGAAAATGTTGCCCTAACCATATCTTCT 60
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 32 ATGATGAAAAAACGGAAGAGGCACGTCTCCAAGGAAGATGTTGCCCTAACCATATCTTCT 91
Query 61 TCAGTGGGTGAATATGGAGAGAACTCGGGTACGTTGCCAACT-GATCTCATGGTCGAAAT 119
||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 92 TCATTGGGTGAATATGGAGAGAACTCGGGTACGTTGCCAA-TGGATCTCATGGTTGAAAT 150
Query 120 ACTCTCCAGGGTGCCTGCGAAATCGGCCGCGAGGTTCCGTTGCGTGTCAAATG-ATTGGA 178
||||||||| ||||| |||||||||||||||| ||| | |||||||||||| | ||||||
Sbjct 151 ACTCTCCAGAGTGCCAGCGAAATCGGCCGCGAAGTTTCATTGCGTGTCAAA-GAATTGGA 209
Query 179 ATTCTCTTCTCCGCAGTCCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGG 237
||||||||||||||||| ||||| |||||||||||| ||| | ||||| || | |||||
Sbjct 210 ATTCTCTTCTCCGCAGTTCATATTTCACCAACCTGTACCTTACGAGGT-CTCCTACTCGG 268
Query 238 CCACATCTCCTAATCACTTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAG 297
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 269 CCACGTCTCCTAATCACTTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAG 328
Query 298 TATCTGATTTCAGACCAGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCT 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TACCTGATTTCAGACCAGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCT 388
Query 358 AAAGATTACTCGTTTGGAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGA 416
||||||||||||||||||||||||| ||||| ||||||||| |||||||||| | ||||
Sbjct 389 AAAGATTACTCGTTTGGAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGA 447
Query 417 GTGGGTTTTAAGTAGAAAGAGGGATGCAAGGATGATGATATGTAACCCTAGCACAGGACA 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 448 GTGGGTTTTAAGTAGAAAGAAGGATGCAAGGATGATGATATGTAACCCTAGCACAAGACA 507
Query 477 ATTCAAATCTTTACCCAAAGTGAGATCGTGTAGGGGTAATGTTATAACCTATATCGGTTA 536
|||| ||||||||||||||||||||||| | ||| ||| ||||||||||| ||||| ||
Sbjct 508 ATTCCAATCTTTACCCAAAGTGAGATCGAGAAGGAATAAGGTTATAACCTACATCGGGTA 567
Query 537 TAATCCAATCGAAAAACAATATAAGGTATTGTGCATGACGATTCGTGAGAAG-CCATTTA 595
| |||||||||||||| | |||||||| ||||||||||| ||| |||| ||| |||| ||
Sbjct 568 TGATCCAATCGAAAAAGAGTATAAGGTTTTGTGCATGACAATTTGTGA-AAGGCCATATA 626
Query 596 AGTTCAAAGCTGAAGAGCATCAAGTTCTTACACTAGGAACGGGCAAACTGAAATGGAGAA 655
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 627 TGTTCAAAGCTGAAGAGCATCAAGTTCTTACACTAGGAACGGGTAAATTGAAATGGAGAA 686
Query 656 TGCTTGAATGTTCTGTCGATCATTACCCTTATTATCATGGCTCGATTTGCATCAACGGCG 715
||||| |||||| |||||| |||| |||| || || | || ||||||||||||||| |
Sbjct 687 TGCTTAAATGTTTTGTCGAGCATTTCCCTCATCATAA-GGA--GATTTGCATCAACGGGG 743
Query 716 TTTTGTTTTACTTAGCTATGAA-GAGTGAGTCTAAAGAATATATGACAGTTTCCTTTCAT 774
| |||| |||||||||| |||| || |||| ||| |||| |||| | ||||| |||||||
Sbjct 744 TGTTGTATTACTTAGCTGTGAAAGA-TGAGACTAGAGAAGATATAATAGTTTGCTTTCAT 802
Query 775 ATGAAGGATGAGAATTTC-ATGTTTATACCGAACCAAGATCTGTTGTCAACATTAATAAA 833
| ||| ||||||| ||| | |||||||| |||| ||| || ||||||||| || |||||
Sbjct 803 GTTAAGCATGAGAAGTTCCA-GTTTATACTGAACAAAGCTCCGTTGTCAACTTTGATAAA 861
Query 834 TTACAA-GGGACGCTTAGGAGGAATTCGTCATAAATCATTTGGCTTTATGGATGGTGGAG 892
|||||| |||| ||||||||||| |||||| ||||||||||| |||||||
Sbjct 862 TTACAATGGGAAA-TTAGGAGGAATCCGTCAT---------GGCTTTATGGAAGGTGGAG 911
Query 893 ATGTAGGCTTTGAGTTGTGG-ATTCTTGATGTTGTAAATCAGGAATGGATAAGGTC-TAT 950
|| ||||| |||||||||| || |||||| ||| ||| |||| |||| |||| | |||
Sbjct 912 TTGCAGGCTATGAGTTGTGGGAT-CTTGATATTGAAAAAGAGGATTGGACAAGG-CATAT 969
Query 951 TCACGTATTGCCACCTATGTGGAAGGATGTCGTTGGGGAGACTAGAGTTTACTTTGTTGG 1010
|||| ||||||| |||||||||||| | || ||||||||||||||||||||| |||||||
Sbjct 970 TCACATATTGCCGCCTATGTGGAAGCAGGTAGTTGGGGAGACTAGAGTTTACGTTGTTGG 1029
Query 1011 GATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAACCCTTTCTACAT 1070
||| ||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1030 GATGATCGGTACAAGTGAAATTGTGTTTTCTCCATTCGTGAAGTCTAACCCTTTCTACAT 1089
Query 1071 CTTTCACTTAGATAT-GAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGGGACTGGAC 1129
|||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1090 CTTTCACTTAAATATAGA-GAGGAACTCTATCACAAGAGTTGAAATCCAAGGGACTGGAC 1148
Query 1130 CTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGAATCTTATT 1188
|||||||||||||| || |||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 1149 CTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGAAGCTTATT 1207
Query 1189 ATGTAA 1194
||||||
Sbjct 1208 ATGTAA 1213
> Ahg937752 jgi|Araly1|937752|scaffold_501943.1
Length=751
Score = 436 bits (236), Expect = 1e-121
Identities = 301/331 (91%), Gaps = 10/331 (3%)
Strand=Plus/Plus
Query 139 AAATCGGCCGCGAGG-TTC-CGTTGCGTGTCAAATG-ATTGGAATTCTCTTCTCCGCAGT 195
||||| ||||||||| ||| ||||||||| || | ||||||| |||||||||| |||
Sbjct 64 AAATCAGCCGCGAGGTTTCATATTGCGTGTCCAA-GAATTGGAAACCTCTTCTCCGAAGT 122
Query 196 CCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGGCCACATCTCCTAATCAC 254
|||||| |||||||||||| ||||| ||| | || | ||||||||| ||||||||||||
Sbjct 123 CCATATTTCACCAACCTGTACCTGACGAGAT-CTCCTGCTCGGCCATTTCTCCTAATCAC 181
Query 255 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAGTATC-TGATTTCAGACC 313
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 182 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAGTA-CATGATTTCAGACC 240
Query 314 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 300
Query 374 GAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGAGTGGGTTTTAAGTAGA 432
||||||||| ||||| ||||||||| |||||||||| | ||||||||||||||||||||
Sbjct 301 GAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGAGTGGGTTTTAAGTAGA 359
Query 433 AAGAGGGATGCAAGGATGATGATATGTAACC 463
|||| ||||||||||||||||||||||||||
Sbjct 360 AAGAAGGATGCAAGGATGATGATATGTAACC 390
Score = 370 bits (200), Expect = 1e-101
Identities = 278/314 (89%), Gaps = 12/314 (4%)
Strand=Plus/Plus
Query 887 GTGGAGATGTAGGCTTTGAGTTGT-GGATTCTTGATGTTGTAAATCAGGAATGGAT-AAG 944
|||||| || |||||||||||||| ||| ||||||| || ||| |||| ||| | |||
Sbjct 424 GTGGAGTTGCAGGCTTTGAGTTGTGGGA-TCTTGATACTGAAAAAGAGGATTGG-TCAAG 481
Query 945 GTC-TATTCACGTATTGCCACCTATGTGGAAGGATGTC-GTTGGGGAGACTAGAGTTTAC 1002
| | ||||||| ||||||| |||||||||||| | | | |||| ||||||||||||||||
Sbjct 482 G-CATATTCACATATTGCCGCCTATGTGGAAGCA-GGCTGTTGCGGAGACTAGAGTTTAC 539
Query 1003 TTTGTTGGGATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAA-CCC 1061
|||||||||| ||||||| |||| |||||||||||||||||||||||| ||| |||
Sbjct 540 GTTGTTGGGATGATCGGTACAAATGAAATTGTGTTTTCTCCATTCGTCAAGT-CAATCCC 598
Query 1062 TTTCTACATCTTTCACTTAGATATGAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGG 1121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 TTTCTACATCTTTCACTTAGATATGAAGAGGAACTCTATCACAAGAGTTGAAATCAAAGG 658
Query 1122 GACTGGACCTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGA 1180
|||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 659 GACTGGACCTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGA 717
Query 1181 ATCTTATTATGTAA 1194
| ||||||||||||
Sbjct 718 AGCTTATTATGTAA 731
> Ahg932493 jgi|Araly1|932493|scaffold_400481.1
Length=1181
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 451 ATGATATGTAACCCTAGCACAGGACAAT 478
||||||||||||||||||||||||||||
Sbjct 136 ATGATATGTAACCCTAGCACAGGACAAT 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5