BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49450.1 Length=1194 Score E Sequences producing significant alignments: (Bits) Value Ahg937743 jgi|Araly1|937743|scaffold_501934.1 1419 0.0 Ahg937752 jgi|Araly1|937752|scaffold_501943.1 436 1e-121 Ahg932493 jgi|Araly1|932493|scaffold_400481.1 52.8 6e-06 > Ahg937743 jgi|Araly1|937743|scaffold_501934.1 Length=1234 Score = 1419 bits (768), Expect = 0.0 Identities = 1066/1206 (88%), Gaps = 36/1206 (3%) Strand=Plus/Plus Query 1 ATGATGAAAAAACGGAAGAGGAAAGTCTCCAAGGAAAATGTTGCCCTAACCATATCTTCT 60 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 32 ATGATGAAAAAACGGAAGAGGCACGTCTCCAAGGAAGATGTTGCCCTAACCATATCTTCT 91 Query 61 TCAGTGGGTGAATATGGAGAGAACTCGGGTACGTTGCCAACT-GATCTCATGGTCGAAAT 119 ||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| Sbjct 92 TCATTGGGTGAATATGGAGAGAACTCGGGTACGTTGCCAA-TGGATCTCATGGTTGAAAT 150 Query 120 ACTCTCCAGGGTGCCTGCGAAATCGGCCGCGAGGTTCCGTTGCGTGTCAAATG-ATTGGA 178 ||||||||| ||||| |||||||||||||||| ||| | |||||||||||| | |||||| Sbjct 151 ACTCTCCAGAGTGCCAGCGAAATCGGCCGCGAAGTTTCATTGCGTGTCAAA-GAATTGGA 209 Query 179 ATTCTCTTCTCCGCAGTCCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGG 237 ||||||||||||||||| ||||| |||||||||||| ||| | ||||| || | ||||| Sbjct 210 ATTCTCTTCTCCGCAGTTCATATTTCACCAACCTGTACCTTACGAGGT-CTCCTACTCGG 268 Query 238 CCACATCTCCTAATCACTTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAG 297 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 269 CCACGTCTCCTAATCACTTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAG 328 Query 298 TATCTGATTTCAGACCAGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCT 357 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 TACCTGATTTCAGACCAGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCT 388 Query 358 AAAGATTACTCGTTTGGAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGA 416 ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| | |||| Sbjct 389 AAAGATTACTCGTTTGGAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGA 447 Query 417 GTGGGTTTTAAGTAGAAAGAGGGATGCAAGGATGATGATATGTAACCCTAGCACAGGACA 476 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 448 GTGGGTTTTAAGTAGAAAGAAGGATGCAAGGATGATGATATGTAACCCTAGCACAAGACA 507 Query 477 ATTCAAATCTTTACCCAAAGTGAGATCGTGTAGGGGTAATGTTATAACCTATATCGGTTA 536 |||| ||||||||||||||||||||||| | ||| ||| ||||||||||| ||||| || Sbjct 508 ATTCCAATCTTTACCCAAAGTGAGATCGAGAAGGAATAAGGTTATAACCTACATCGGGTA 567 Query 537 TAATCCAATCGAAAAACAATATAAGGTATTGTGCATGACGATTCGTGAGAAG-CCATTTA 595 | |||||||||||||| | |||||||| ||||||||||| ||| |||| ||| |||| || Sbjct 568 TGATCCAATCGAAAAAGAGTATAAGGTTTTGTGCATGACAATTTGTGA-AAGGCCATATA 626 Query 596 AGTTCAAAGCTGAAGAGCATCAAGTTCTTACACTAGGAACGGGCAAACTGAAATGGAGAA 655 |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 627 TGTTCAAAGCTGAAGAGCATCAAGTTCTTACACTAGGAACGGGTAAATTGAAATGGAGAA 686 Query 656 TGCTTGAATGTTCTGTCGATCATTACCCTTATTATCATGGCTCGATTTGCATCAACGGCG 715 ||||| |||||| |||||| |||| |||| || || | || ||||||||||||||| | Sbjct 687 TGCTTAAATGTTTTGTCGAGCATTTCCCTCATCATAA-GGA--GATTTGCATCAACGGGG 743 Query 716 TTTTGTTTTACTTAGCTATGAA-GAGTGAGTCTAAAGAATATATGACAGTTTCCTTTCAT 774 | |||| |||||||||| |||| || |||| ||| |||| |||| | ||||| ||||||| Sbjct 744 TGTTGTATTACTTAGCTGTGAAAGA-TGAGACTAGAGAAGATATAATAGTTTGCTTTCAT 802 Query 775 ATGAAGGATGAGAATTTC-ATGTTTATACCGAACCAAGATCTGTTGTCAACATTAATAAA 833 | ||| ||||||| ||| | |||||||| |||| ||| || ||||||||| || ||||| Sbjct 803 GTTAAGCATGAGAAGTTCCA-GTTTATACTGAACAAAGCTCCGTTGTCAACTTTGATAAA 861 Query 834 TTACAA-GGGACGCTTAGGAGGAATTCGTCATAAATCATTTGGCTTTATGGATGGTGGAG 892 |||||| |||| ||||||||||| |||||| ||||||||||| ||||||| Sbjct 862 TTACAATGGGAAA-TTAGGAGGAATCCGTCAT---------GGCTTTATGGAAGGTGGAG 911 Query 893 ATGTAGGCTTTGAGTTGTGG-ATTCTTGATGTTGTAAATCAGGAATGGATAAGGTC-TAT 950 || ||||| |||||||||| || |||||| ||| ||| |||| |||| |||| | ||| Sbjct 912 TTGCAGGCTATGAGTTGTGGGAT-CTTGATATTGAAAAAGAGGATTGGACAAGG-CATAT 969 Query 951 TCACGTATTGCCACCTATGTGGAAGGATGTCGTTGGGGAGACTAGAGTTTACTTTGTTGG 1010 |||| ||||||| |||||||||||| | || ||||||||||||||||||||| ||||||| Sbjct 970 TCACATATTGCCGCCTATGTGGAAGCAGGTAGTTGGGGAGACTAGAGTTTACGTTGTTGG 1029 Query 1011 GATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAACCCTTTCTACAT 1070 ||| ||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||| Sbjct 1030 GATGATCGGTACAAGTGAAATTGTGTTTTCTCCATTCGTGAAGTCTAACCCTTTCTACAT 1089 Query 1071 CTTTCACTTAGATAT-GAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGGGACTGGAC 1129 |||||||||| |||| || ||| |||||||||||||||||||||||| |||||||||||| Sbjct 1090 CTTTCACTTAAATATAGA-GAGGAACTCTATCACAAGAGTTGAAATCCAAGGGACTGGAC 1148 Query 1130 CTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGAATCTTATT 1188 |||||||||||||| || |||||||| ||| |||||||||||||||||||||| |||||| Sbjct 1149 CTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGAAGCTTATT 1207 Query 1189 ATGTAA 1194 |||||| Sbjct 1208 ATGTAA 1213 > Ahg937752 jgi|Araly1|937752|scaffold_501943.1 Length=751 Score = 436 bits (236), Expect = 1e-121 Identities = 301/331 (91%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 139 AAATCGGCCGCGAGG-TTC-CGTTGCGTGTCAAATG-ATTGGAATTCTCTTCTCCGCAGT 195 ||||| ||||||||| ||| ||||||||| || | ||||||| |||||||||| ||| Sbjct 64 AAATCAGCCGCGAGGTTTCATATTGCGTGTCCAA-GAATTGGAAACCTCTTCTCCGAAGT 122 Query 196 CCATATCTCACCAACCTGTTCCTGAAGAGGTCCT-CGGCTCGGCCACATCTCCTAATCAC 254 |||||| |||||||||||| ||||| ||| | || | ||||||||| |||||||||||| Sbjct 123 CCATATTTCACCAACCTGTACCTGACGAGAT-CTCCTGCTCGGCCATTTCTCCTAATCAC 181 Query 255 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCCCCCGAGTATC-TGATTTCAGACC 313 |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| Sbjct 182 TTTTCAAGCTGAGGGTAAGTGGTCTTTCTTCTCATCACCCGAGTA-CATGATTTCAGACC 240 Query 314 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGAACTCAAATCTTGTAGTTGTTGATAATCATATGGATGTCCCTAAAGATTACTCGTTTG 300 Query 374 GAGTTTGTGTTCCTGTTTGTGGATTGATGTGTACTAGCA-ATGAGTGGGTTTTAAGTAGA 432 ||||||||| ||||| ||||||||| |||||||||| | |||||||||||||||||||| Sbjct 301 GAGTTTGTGAACCTGTATGTGGATTGTTGTGTACTAG-AGATGAGTGGGTTTTAAGTAGA 359 Query 433 AAGAGGGATGCAAGGATGATGATATGTAACC 463 |||| |||||||||||||||||||||||||| Sbjct 360 AAGAAGGATGCAAGGATGATGATATGTAACC 390 Score = 370 bits (200), Expect = 1e-101 Identities = 278/314 (89%), Gaps = 12/314 (4%) Strand=Plus/Plus Query 887 GTGGAGATGTAGGCTTTGAGTTGT-GGATTCTTGATGTTGTAAATCAGGAATGGAT-AAG 944 |||||| || |||||||||||||| ||| ||||||| || ||| |||| ||| | ||| Sbjct 424 GTGGAGTTGCAGGCTTTGAGTTGTGGGA-TCTTGATACTGAAAAAGAGGATTGG-TCAAG 481 Query 945 GTC-TATTCACGTATTGCCACCTATGTGGAAGGATGTC-GTTGGGGAGACTAGAGTTTAC 1002 | | ||||||| ||||||| |||||||||||| | | | |||| |||||||||||||||| Sbjct 482 G-CATATTCACATATTGCCGCCTATGTGGAAGCA-GGCTGTTGCGGAGACTAGAGTTTAC 539 Query 1003 TTTGTTGGGATAATCGGTAGTTGTGAAGTTGTGTTTTCTCCATTCGTCAAGTCCAA-CCC 1061 |||||||||| ||||||| |||| |||||||||||||||||||||||| ||| ||| Sbjct 540 GTTGTTGGGATGATCGGTACAAATGAAATTGTGTTTTCTCCATTCGTCAAGT-CAATCCC 598 Query 1062 TTTCTACATCTTTCACTTAGATATGAAGAGCAACTCTATCACAAGAGTTGAAATCAAAGG 1121 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 599 TTTCTACATCTTTCACTTAGATATGAAGAGGAACTCTATCACAAGAGTTGAAATCAAAGG 658 Query 1122 GACTGGACCTCTTGAAGGTCAAGCA-GTTTACACATTTGTAAACCATATCGAGAATGTGA 1180 |||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||| Sbjct 659 GACTGGACCTCTTGAAGGTCAA-CAAGTTTACACCTTTATAAACCATATCGAGAATGTGA 717 Query 1181 ATCTTATTATGTAA 1194 | |||||||||||| Sbjct 718 AGCTTATTATGTAA 731 > Ahg932493 jgi|Araly1|932493|scaffold_400481.1 Length=1181 Score = 52.8 bits (28), Expect = 6e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 451 ATGATATGTAACCCTAGCACAGGACAAT 478 |||||||||||||||||||||||||||| Sbjct 136 ATGATATGTAACCCTAGCACAGGACAAT 163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44565689973 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5