BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49480.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485305 jgi|Araly1|485305|fgenesh2_kg.5__1297__AT3G49480.1 922 0.0
> Ahg485305 jgi|Araly1|485305|fgenesh2_kg.5__1297__AT3G49480.1
Length=897
Score = 922 bits (499), Expect = 0.0
Identities = 802/938 (86%), Gaps = 61/938 (7%)
Strand=Plus/Plus
Query 1 ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGCCTAAGAGCCTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCTACAAGGTT 60
Query 61 CTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGT 120
||||||||||||||| | |||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 CTTGTGGATGTTCCTCGACAAGTCTCTCTCCCATCACTCACAGAACTTGATCTCTTCTGT 120
Query 121 GTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAG 180
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 121 GTTGTGTACAAAGACGAAGATTCTCATGTTAGGCTTTTATCAAGTTGTCCCGTTCTCAAG 180
Query 181 CATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAA 240
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||
Sbjct 181 CGTCTAAAGGTGACTCGAAATAGACATGTGGAAGATATTGTGAGAACGTTTAGTGTTAAA 240
Query 241 GTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGAT 300
||||||||||||||||||||||| ||||||| || || || |||| | | |||||||||
Sbjct 241 GTGCCTTCTTTATTGAGATTAGATTACAAAGTAGATACGACATTTC-A-A-GACAGTGAT 297
Query 301 -ATGTCTGATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGA 359
|| ||| |||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 298 GATA---GAT---TTTT-GGTTATAGACACTCCAAATTTATTGTCTCTTCACATCTTTGA 350
Query 360 TACTGTGGGATACTCTCTCTCAGTTTG-GTACATGCCCCATCTTGTCACAGTAGTTACTG 418
|| | | ||| ||||| |||||||| | |||||||||||||||||| |||||||||| ||
Sbjct 351 TATTTTTGGACACTCTTTCTCAGTT-GAGTACATGCCCCATCTTGTTACAGTAGTTATTG 409
Query 419 ATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGC 478
|| ||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 410 ATCTGCTCTTCCCTATTGAAAACTTTATGAGGTCTCTCTCTTCGGTCAAGTATCTTGCGT 469
Query 479 TATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTG 538
||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 470 TATCTCCGTTCGATATAATGGTTCCATGGTGTGACGCAGTAAATAACTACTCTCGACTTA 529
Query 539 -TTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTC 597
||| ||| || | || | || | || || ||| || || | | | |
Sbjct 530 CTTG--TGT--GA-A--TC-A-CTT--T-TGG-TT-TTGC--TCTCTAAT--T---G-T- 566
Query 598 TCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTC--CGAG-ATG-GAA 653
||||| | || || || |||||| |||||||||| || ||| | || ||| |||
Sbjct 567 TCTAA-TCTT--AA----AA-GTTTTTATGGTCGACTCTGAGATTGGTC-AGTATGCGAA 617
Query 654 TCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCT 713
||||| |||| |||||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 618 TCATGGTCCAGGTTTATGGAATCAACCGAGTTCTGTTCCAGGATGTTTGTCGTCTCATCT 677
Query 714 CGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGaaaaaaaTCATAAGGTA 773
|||||||||||||||||| ||||||| |||||| || |||||||| || ||||||| ||
Sbjct 678 CGAGATCTTTGAGTGGGAAGGATATGCAGGAAGAAAATATGAGAAAGAACTCATAAGATA 737
Query 774 CATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAG 833
|||||||||||||||||| | ||||||||||| ||||||||| ||||||||||| | |||
Sbjct 738 CATTCTAGAAAACTCCAAGTGTTTAAAAACAGTGGGAATCTCGCCGAATTCAACATGCAG 797
Query 834 TGGTGAAGAGAAACAGAAGATGG------AGGAGTTAGAATCAATGCATAGGACT-CCAA 886
|| |||||||||||||||||| ||||||||||||| |||||||| | | ||||
Sbjct 798 TG---AAGAGAAACAGAAGATGGTGGTTGAGGAGTTAGAATCTATGCATAG-AGTTCCAA 853
Query 887 CGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGA 924
|||||||||||||||||||||||||||||| |||||||
Sbjct 854 CGTCTGTGCTTCTGTCCTCTGCTCGAATGTTATTTAGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5