BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49490.1
Length=3095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937750 jgi|Araly1|937750|scaffold_501941.1 1513 0.0
> Ahg937750 jgi|Araly1|937750|scaffold_501941.1
Length=2773
Score = 1513 bits (819), Expect = 0.0
Identities = 1094/1219 (90%), Gaps = 50/1219 (4%)
Strand=Plus/Plus
Query 33 TCGTTTTGGTGA-GAAAACGATGACCGATGGATTT--C-GCTATAATGGTTTCTCTGGAA 88
|||||||||||| |||||||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 1 TCGTTTTGGTGAGGAAAACGATGGCCGATGGATTTCGCAGCTATGGTGGTTTCTCTGGAA 60
Query 89 TAGCGTACCCGTTTTGGCTCTCATCTCCACCACCGCCTACACCTCCACATCATCCAGCTT 148
||||||||||||| |||||||||||| |||||| || | | |||||||||||
Sbjct 61 TAGCGTACCCGTTGTGGCTCTCATCT------CCGCCT---CC-GC-C-TCATCCAGCTT 108
Query 149 CTGCGCCGCCGTTTCAACAAAGCAATCCGGTTGAATCCTATGATCCAGCCAAAGAAGTGT 208
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 109 CTGCGCCGCCGTTTCAACCAAGCAATCCGGTTGAATCCTATGATCCAACCAAAGAAGTGT 168
Query 209 TTGATCCGATGATGTTGTATCATGACTCTTATCAACGATCGCCGGCTAATTGGTCAAATA 268
|||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 169 TTGATCCGATGA---TGTATCCCGGCTCTTATCAACGATCGCCGGCTGATTGGTCAAATA 225
Query 269 ACCCATCGTATCGTGAAAATTCTCGCTCTCAGACTCCTTCTTCATCGTTTTATGCTGACA 328
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 226 ATCCATCGTATCGTGAAAATTCTCGCTCTCAGACGCCTTCCTCATCGTTTTACGCTGACA 285
Query 329 ACACTCAACATGGAAATAGTGGTCTTCGAGGTGAAGATTCTTCTTATAAAGATATGTTAT 388
| |||| || ||||||| |||||| |||||||||| | | | |||||||| |||||||
Sbjct 286 ATACTCGACTTGGAAATTGTGGTCCAAGAGGTGAAGA-T-TAC-TATAAAGAAATGTTAT 342
Query 389 CACCGAGTGGATTTTACTCTTCAAGGGAATCATCATCTGATTTTGTGTCACTTCCTCCCA 448
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 343 CACCGAGTGGATTTTACTCTTCAAGGGAATCATCATCTGATTTTGTGTCAC-T--TCCCG 399
Query 449 CTGAGAATTTCTCAGAGAGGCAACGTTTGAACTTTGAGCCTACCTACAGCTCAGCTACCT 508
|||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 400 CTGACAATTTCTGGGAGAGGCAACGTTTGAACTTTGCGCCTACCTACAACTCAGCTACCT 459
Query 509 TAGCTCCTGTGTCTTCTTATGCAGATATGCTAATCAGAAATTCTCAGG-ACTCATTCTTT 567
||||||| ||||||||||||||||| |||||||||| |||||||| || || |||||||
Sbjct 460 TAGCTCCAGTGTCTTCTTATGCAGAGATGCTAATCAAAAATTCTCGGGAAC-CATTCTTC 518
Query 568 ACTCCTATCGCGTCATCTGGTGTTTACTCTTCTAGCAATGCTGTTGATGAGAAACGTCCT 627
|| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 519 ACGCCTATTACGTCATCTGGTGTTTACGCTTCTAGCAATGTTGTTGATGAGAAACGTCCT 578
Query 628 GGATATTACTTTCTTGGCTCAGATAGATCTGAAACTATGAATGTTGTCTCTGCTTCTCGT 687
|| ||| || ||| || |||||||||||||||||||||||||||||| |
Sbjct 579 GG--ATT--TTACTT---TC--------CTGAAACTATGAATGTTGTCTCTGCTTCTCAT 623
Query 688 GTGGAGCCTTACAT-GTGTGATACAGATTGTAATCCTTCTTTTCCAATGCCGAATTTTAT 746
|||||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||| |
Sbjct 624 GTGGAGCCTTACATAG-GTGTTACAGATTGTAATCCATCTTTGCCAATGCCGAATTTGAA 682
Query 747 AACACAAGCTCTCTTTGATGGAAGTCAGACTGGGCTTCGTGTAGGAGATGGGAGATCATT 806
|||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||
Sbjct 683 AACACAAGCTCTCTTTGATGGAAGTCAGACCGGGGTTCATGTAGGAGATGGAAGATCATT 742
Query 807 CCCGAGCAACAGTGATGTTTGTAGTCATGCGCCTCAGAATTTTTTAGGAGCTCAATCCAG 866
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 743 CCCGAGCAACAGTGATGTTTGTAGTCATGCGCCTGAGAATTTTTTGGGAGCTCAATCTAG 802
Query 867 CTTGCAGAGTTCCTCTGTTGAACCAGTTAACTTCGATGTGTTACTGGGATATGGTGAAGC 926
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 803 CTTGCAGAGTTCCTCTGTTGAACCAGTTAATTTCGATGTGTTGCTTGGATATGGTGAAGC 862
Query 927 TACTGGTCATATCAAGCCTTTGCCCGAGAATCCAAATCTTCCCTATCCGG-TAGTTGGCT 985
|||||||||||| |||||||||||| |||||||| |||||| |||| ||| ||| |||||
Sbjct 863 TACTGGTCATATGAAGCCTTTGCCCAAGAATCCAGATCTTCGCTAT-CGGATAGCTGGCT 921
Query 986 CGCAAGGTTCGAGAAGTCC-GCGATCTTCCTACCCCTTACCATCTATTATTAATTCCTCT 1044
||||||||| |||||| || | |||||||| ||||| ||||| ||| ||||||||||||
Sbjct 922 CGCAAGGTTTGAGAAGCCCAG-GATCTTCCCACCCCCTACCAGCTAATATTAATTCCTCA 980
Query 1045 GTGTCACTGATTAAA-GATGAAGTAGAAGGTAGTGGTGTCTCCTCCCTTTATCAGAGGCC 1103
|||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 981 GTGTCACTGA-TAAATGATAAACTAGAAGGTAGTGGTGTCTCCTCCCTTTATCAGAGGCC 1039
Query 1104 TTATACTTTGGTTGCTGACAGTGAGAATGGTGTTTCTGAGAGCTCCTTAAAGAATGCAAC 1163
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1040 TTACACTTTGGTTGCTGACAGTGAGAATGGTGTTTCTGAGAGCTCCTTGAAGAATGCAAC 1099
Query 1164 TGAGGATTTAAATTGTCACGAGCCTCGATCTTGGAGCCACTTCATGGTAACCTCTGAGGG 1223
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TGAAGATTTAAATTGTCACGAGCCTCGATCTTGGAGCCACTTCATGGTAACCTCTGAGGG 1159
Query 1224 ACCTTCAGCTCCCACGATG 1242
||||||||||||||| |||
Sbjct 1160 ACCTTCAGCTCCCACAATG 1178
Score = 1507 bits (816), Expect = 0.0
Identities = 1044/1148 (91%), Gaps = 39/1148 (3%)
Strand=Plus/Plus
Query 1795 CATGAGGCCGC-AACGGGAGTTGCTAAAGACTTTCAAAGG-TTTAGTGTCAAGCCACTAG 1852
||||||||||| || |||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 1656 CATGAGGCCGCGAA-GGGAGTTGCTAAAGACTTTC-AAGGTTTTATTGTCAAGCCACTAG 1713
Query 1853 ACAGCTTTGGTGTCAAAGAACCGGTGGATAAGAATGAAATGACCCAGAGTATTAAGAACA 1912
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 ACAGCTTTGGCGTCAAAGAACCGGTGGATAAGAATGAAATGACCCAGAGTATTAAGAACA 1773
Query 1913 TACTTGCTTCCAACTTTCCTGATGGTGAAGAAAACCACCCACAAACTCTCTTGTACAAGA 1972
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1774 TTCTTGCTTCCAACTTTCCTGATGGTGAAGAAAACAACCCACAAACTCTCTTGTACAAGA 1833
Query 1973 ATCTCTGGCTCGAAACTGAAGCTGCCTTATGTTCCACAACTTGCATGGCTCGGTATCATC 2032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 GTCTCTGGCTCGAAACTGAAGCTGCCTTATGTTCCACAACTTGCATGGCTCGGTATCATC 1893
Query 2033 GGATCAAGAACGAGATTGGTAATCTCAAATTGAACAATAAAGAGATCTCTGCGGATGCAG 2092
|||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||
Sbjct 1894 GGATCAAGAACGAGATTGATAATCTCAAATTTAACAGTAAAGAGATCTCTGCAGATGCAG 1953
Query 2093 TAAGCTTTATGCAGGAACCTTCTCTTAACACACAGAAATCGGTTCCCATCATG---AATG 2149
|| |||||||||||| |||||||||||| | ||||||||||||||||||||| ||||
Sbjct 1954 CAACCTTTATGCAGGAGCCTTCTCTTAACCCCCAGAAATCGGTTCCCATCATGAACAATG 2013
Query 2150 CAAATGCAGACAAGGATACACCTGAATCTATCATCAAACATGGAAGCAATTGTGGGAAAA 2209
|||||||||| ||||| ||| ||||||| |||| ||||||||||||| ||||||||| |
Sbjct 2014 CAAATGCAGAGAAGGAGACAACTGAATCGATCAGAAAACATGGAAGCAGTTGTGGGAACA 2073
Query 2210 ATGCAGCAACAATGAGTCATGATGCATC-CGAAAGCTCTAGAATCAACTCAGATCCTGTG 2268
||| || ||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct 2074 ATGTAGTAACAATGAGTCATGATGCATCAC-AATGCTCTAGATTCAACTCAGATCCTGTG 2132
Query 2269 GATGCAGTATTATCGGTTATGTCCAGAAGCTTTACTGGTGGTTTAGAGCAGACCATTCGT 2328
||||||||||||||| ||||||||||||||||| | | || | | ||
Sbjct 2133 GATGCAGTATTATCGCTTATGTCCAGAAGCTTT--TCG-GG--T------G-------GT 2174
Query 2329 GGAAACTTAAGGCCTGATGATGCAACCTTTGCAAAGATACCGGATGCGATATGGCAGGAA 2388
||||||||||||| |||||||| || ||||||||| ||||| ||| | ||||||
Sbjct 2175 ------TTAAGGCCTGATGTTGCAACCTCTGTAAAGATACCAGATGCAATACGACAGGAA 2228
Query 2389 ACCTCTGCATCCACTACAGAGAACAAACATAGA-GAGGTTATAGACCGGTTTCAGATAT- 2446
||| ||||||||||||||||||||||||||| | || |||||||||||||||||||| |
Sbjct 2229 ACCCCTGCATCCACTACAGAGAACAAACATA-ATGATGTTATAGACCGGTTTCAGAT-TC 2286
Query 2447 TGAAGGAGCAGGAAACAGAGCGCAAGCTCAAGTCTCAGAAGCTCCCTGATTCAGACATTG 2506
||||| ||||||||||||||||||| ||||||||||||||| | || |||||||||||||
Sbjct 2287 TGAAGCAGCAGGAAACAGAGCGCAAACTCAAGTCTCAGAAGTTACCAGATTCAGACATTG 2346
Query 2507 ATGTTATAGACCGGTTTCAGATTCTCAAGCAGCAGGAAACAAATCGCAAACTCAAGGCTC 2566
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2347 ATGTTATAGACCGGTTTCAGATTCTCAAGCAGCAGGAAACAAACCGCAAACTCAAGACTC 2406
Query 2567 AAAAATGTCCAGAAACAAAAAAGGGTGACCAGGAGGACAAACTAGAAGGTTCAGTGATGG 2626
|||| ||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 2407 AAAACTGTTCAGAGACAAAAAAGGGTGACCAGGAGGAGAAACTAGAAGCTTCAGTGATGG 2466
Query 2627 CTAATATGGGCAGAAGCAGCGATGTGAGTGATGTTATGGATAGATTCCAGATACTGAAAC 2686
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2467 CTAATATTGGCAGAAGCAGCCATGTGAGTGATGTTATGGATAGATTCCAGATACTGAAAC 2526
Query 2687 GCCGGGAAGCTGAACAAGTGAAGAAATCTCTCAACAGCATGGATGTAGATTCGGATTCAG 2746
|||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 2527 GCCGGGAAGCTGAACAAGTGAAGAAATCTCTCAACAACTTGGATGTAGATTCAGATTCAG 2586
Query 2747 AAAATGACCAGCCACAAAAGCGTGATCATCTCTGGTCAGATTCGTT-ATTCCCAATACGT 2805
| || |||||||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct 2587 ACAACGACCAGCCACAAAAGCGTGATCATCTCTGGTCAGCTTCAATGAT-CCCAATACGC 2645
Query 2806 GGACATTCTCAGAGAGAAACATGCGCCGCGGACACTGAACAATCTGCATCTGGCAAAGGA 2865
||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 2646 GGACATTCTCAGAGAGAAACAGGCGCTGCGGACACTGAGCAATCTGCATCTGGCAAAGGC 2705
Query 2866 TACGAGAGCCCGACCTCGGACTGGGAACATGTCATCAAGGATGATTGAGTAGTGAAATTT 2925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2706 TACGAGAGCCCGACCTCGGACTGGGAACATGTCATCAAGGATGATTGAGTAGTGAAACTT 2765
Query 2926 CCTTGGAC 2933
||||||||
Sbjct 2766 CCTTGGAC 2773
Score = 767 bits (415), Expect = 0.0
Identities = 473/502 (94%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 1267 GGACCTTCAGCTCCTACGATGAAAGCGGATAATGAGAATGCTCAGTCAGCTGGCAACTAC 1326
|||||||||||||| || |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 1158 GGACCTTCAGCTCCCACAATGATAGCGGATAATGAGAATGCTCAATCAGCTGTCAACTAT 1217
Query 1327 AAACCCCCTTTCGAAGGTAGTACTACTCAACCTAGTGAAGATGTTCCAACCAACCAAGAG 1386
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||
Sbjct 1218 AAACCCCCTTTCGAAGGTGGTACCACTCAACCTAGTGAAGATGTTCCAACTAACCAAAAG 1277
Query 1387 TCTTGTAATCTCCAGAAACAAACATTTGATATAATGGATAGAGATAAGAAGATCAGATCG 1446
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1278 TCTTGTAATCTCCAGGAACAAACATTTGATATAATGGATAGAGATAAGAAGATCAGGTTG 1337
Query 1447 TTGACAGATGTGGGGCTCGATTTGAGTAGTAGATCAAATGCAGATGATGTCTCAACTGGC 1506
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TTGACAGATCTGGGTCTCGACTTGAGTAGTAGATCAAATGCAGATGATGTCTCAACTGGC 1397
Query 1507 CGATCACCTGAAAGGCACTTCTGTGATCAAGGAGATTTCCCATCTCCAACTTCTTATCCA 1566
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1398 CGATCACCTGAAAAGCACTTCTGTGATCAAGGAGATTTCCCATCTCCGACTTCTTCTCCA 1457
Query 1567 AGAGTTTCTTCTGTTGTTAACGCCATGCATAATTTGTCAGAAGTGCTTGTTTATGAATGC 1626
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 AGAGTTTCTTCTGTGGTTAACGCCATGCATAATTTGTCAGAAGTGCTTGTTTATGAATGC 1517
Query 1627 TTTAACAATGGAAGCTGGCTGAAGCTGGAGCAACTTGAGAACCTTGATAAAGTAGTAGAT 1686
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1518 TTTAACAATGGAAGCTGGCTGAAGCTGGAGCAACTTGAGAACCTTGACAAAGTAGTAGAT 1577
Query 1687 AATCTCACAAAGTGTTTGAAGAAAATTACTGATAATAAGACAACAGCAGGGGAAGCAACA 1746
|||||||||||||| || |||||||| |||||||||||| | |||||||||||||| ||
Sbjct 1578 AATCTCACAAAGTGCTTAAAGAAAATAACTGATAATAAGTCGACAGCAGGGGAAGCCTCA 1637
Query 1747 CTTCCAACGCAATCTATGCATG 1768
|||||||||||| |||||||||
Sbjct 1638 CTTCCAACGCAAGCTATGCATG 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116898961905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5