BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49510.1
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 2575 0.0
Ahg921240 jgi|Araly1|921240|scaffold_102521.1 172 7e-42
Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216 102 9e-21
Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1 80.5 4e-14
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 76.8 6e-13
Ahg900496 jgi|Araly1|900496|Al_scaffold_0004_1146 75.0 2e-12
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 73.1 7e-12
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 73.1 7e-12
Ahg929147 jgi|Araly1|929147|scaffold_301604.1 71.3 3e-11
Ahg929143 jgi|Araly1|929143|scaffold_301600.1 69.4 1e-10
Ahg327685 jgi|Araly1|327685|fgenesh1_pm.C_scaffold_6002905 69.4 1e-10
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 67.6 3e-10
Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1 67.6 3e-10
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 65.8 1e-09
Ahg951995 jgi|Araly1|951995|scaffold_28600002.1 63.9 4e-09
Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1 63.9 4e-09
Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001 63.9 4e-09
Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 58.4 2e-07
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 58.4 2e-07
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 2575 bits (1394), Expect = 0.0
Identities = 1838/2044 (90%), Gaps = 63/2044 (3%)
Strand=Plus/Plus
Query 25 AAATTTCTGGAGAAAGTTTTGAAGAATGACGACAATTTCCGATCTATCAGATGATTTGGT 84
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAATCTCTGGAGAAAGTTTTGAAGAATGACGACAATTTCCGATCTATCAGAAGATTTGGT 60
Query 85 AGGTGATATTCTTTCTAGGGTTCCATTTACATCTCTAATCTCAGTGCGATCTACTTGTAA 144
|||||| ||||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 61 AGGTGAGATTCTTTCTTGGGTTCCATTTACATCTCTTACCGCAGTGCGATCTACTTGTAA 120
Query 145 AAAGTGGAATGCTTTATCGAAAAATCAGATCTTTGGTAGAAAAACAGCAGCAAGGAATCA 204
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 121 AAAGTGGAATGCTTTATCGAAAAATCACATCTTTGGTAGAAAAACAGCATCAAGGAATCA 180
Query 205 ATTTCTAGAGTTCATGATT-CTAGATTCTAGAGTTTGTTCTTTGAGATTAGATCTTCAAG 263
||||| ||||||||| || | ||||||||| ||||||||||||||||||||||| ||||
Sbjct 181 GTTTCTGGAGTTCATGGTTGC-AGATTCTAGGGTTTGTTCTTTGAGATTAGATCTCCAAG 239
Query 264 GAATCCGTAACGAAGACAAAGAAGACTTCGTTGATCCATCTATGAAGCTA-ATAAGTATA 322
||||||||||||| ||| |||||||| ||||||| |||||||||||| | |||| ||||
Sbjct 240 GAATCCGTAACGACGACGTAGAAGACTACGTTGATTCATCTATGAAGC-AGATAACTATA 298
Query 323 CCTAGTAATGATGATCAAGTCGAGATATCTCAAGTCTATCATTGCGATGGCTTATTGTTA 382
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 CCTAATAATGATGATCAAGTCGAGATATCTCAAGTCTATCACTGCGATGGCTTATTGTTA 358
Query 383 TGCATCGCCAAAGAGAACTCGAATG-TCTTTGTGTGGAATCCGTATTTGGGGCAAACGAA 441
|||||||||||||| |||||| | | |||||||||||||||||||| | |||||||| ||
Sbjct 359 TGCATCGCCAAAGATAACTCG-AGGCTCTTTGTGTGGAATCCGTATCTAGGGCAAACCAA 417
Query 442 ATGGATTCGACCAAGAAACACA-TTCCACAGATATGACAGGTTTGCTCTTGGATACGACA 500
|||||| | ||||||||||| | ||||||| |||||||||||||||||| ||||||||||
Sbjct 418 ATGGATCCAACCAAGAAACA-AGTTCCACAAATATGACAGGTTTGCTCTCGGATACGACA 476
Query 501 ACAACCGTAACCACAAAATCTTGAGGTTTCTCTATGATGAAGAGAGCAACGAAAGCAGTC 560
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||
Sbjct 477 ACAACCGTAACCACAAAATCTTGAGGTTTCTTTATGATGAAGAGAACAACGAAAGCTGTC 536
Query 561 GAAGAACTCACATTGATGTATACGATTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCA 620
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 GAAGAACTCACATTGATGTATACGATTTCAGCTCTGATTCATGGAGGGTTCTTGATGTCA 596
Query 621 ATCCTGACTGTG--A-TATACCGTTTTATCAG-ACCGGAGTGTCTTTGAAGGGAAATACT 676
|||||||||| | | |||||| ||||||| | | ||| |||||||||||||||||||||
Sbjct 597 ATCCTGACTGGGATATTATACCTTTTTATC-GCAGCGGCGTGTCTTTGAAGGGAAATACT 655
Query 677 TACTTCTTCGGTCAAGAAGTGACACAAGCGACG-AAAGTAACAGAGATTGAAACTTGTTT 735
|||||||||||||||||||| |||||||||| | || |||||| | ||||||||||||||
Sbjct 656 TACTTCTTCGGTCAAGAAGTAACACAAGCGA-GTAAGGTAACAAACATTGAAACTTGTTT 714
Query 736 ACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGCTGTTTTACCC 795
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 715 ACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCACGTTTGCCTCTGCTGTTTCACCC 774
Query 796 TCCCTGTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGCTGT 855
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCCATGTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGCTGT 834
Query 856 GTTATACAACCACTACGTCACAGCTGAGATTATAGAGATTAGGATTTCGACTAAGATTGA 915
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 835 GTTATACAACCACTACGTCACATCTGAGATTATAGAGATTAGGATTTCGACTAAGATTGA 894
Query 916 ACCCAATGCGGTATCCTGGAGCTCTTTTTTGACTGTGGATATGTCACTAGTCAATGGTTT 975
|||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 895 ACCCAATGCGGTATTGTGGAGCTCTTTTTTGACAGTGGATATGTCAGTAGTCAATGGTTT 954
Query 976 ACCGGATCATTTTTCGATGTACTTTGAAGCTAAGAGCTTCTTCATTGACGAGGAGAAGAA 1035
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACCGGATGATTTTTCGATGTACTTTGAAGCTAAGAGCTTCTTCATTGACGAGGAGAAGAA 1014
Query 1036 AGTTGTTGTGCTTTTTGATAGTAAAGAGATCAAGACCTGTCGCTACCAAATGGCTTACAT 1095
||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1015 AGTCGTTGTGCTTTTTGATAGTAAAGTGATCGAGACCTGTCGCTACCAAATGGCTTACAT 1074
Query 1096 CGTTGGAGATGATGGATACTTCAAATCTGTCAACATTGGAGAAAAAGTAGGA-GATAGAG 1154
|||||||||||||||||||||||||||||||||||| |||| ||| | | | | | |||
Sbjct 1075 CGTTGGAGATGATGGATACTTCAAATCTGTCAACATCGGAGTAAATG-ATCAAG-TCGAG 1132
Query 1155 AAAGA--AACGGT-TCTCAAATGAAAAC-CTCTCTT-TTATGCATCGCCGAAGACAACTC 1209
| | || | | | ||| || | || | || |||||||||||| || | |||||
Sbjct 1133 ATATCTCAA-G-TCTATCAC-TGCGATGGCT-TATTGTTATGCATCGCCAAAAATAACTC 1188
Query 1210 GGGACTTGTGGTATGGAATCCGTATTTGTGTCAAACCAAATGGATTCGACTTAGAAACAC 1269
| | ||| ||||||||||||||||| || | ||||| ||||||||||||| ||||||||
Sbjct 1189 GAGTCTTATGGTATGGAATCCGTATCTGGGGCAAACGAAATGGATTCGACCCAGAAACAC 1248
Query 1270 ATTCCACAGATATGAC-GTGTTTGCTCTTGGACACGACAACAACCGTAACCACAAAATCT 1328
|||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 1249 ATTCCACAGAGCTGACAGC-TTTGCTCTTGGATACGACAACAACCGTAACCACAAAATCT 1307
Query 1329 TGAGGTTTCTTTATGATGCCAAGAAGTA-CAGAACCGGTCGCGGACGCGACAATGATGTC 1387
|||||||||||||||||||| ||| | | ||||||||||| ||| | | || ||||||
Sbjct 1308 TGAGGTTTCTTTATGATGCCGAGA-GAAACAGAACCGGTCAAGGATGGGTCATTGATGTA 1366
Query 1388 TACGATTTTAGCTCTGATTCATGGAGGAGGGTTTTTGATGTTAATCCCCACAGGGGTGAA 1447
||||||||||| ||||||||||||||| | || ||||||||||| || | ||| ||||
Sbjct 1367 TACGATTTTAGTTCTGATTCATGGAGG-G--TTCTTGATGTTAATGCCGATTGGGATGAA 1423
Query 1448 CTGTTTTATTACAGTGGCGTGTCCTTGAAGGGAAATTCATACTTTTTCGGTCAAGAGGTA 1507
||||||||| | ||||||||||| ||||||||||||||||| ||||||| || |||||||
Sbjct 1424 CTGTTTTATCAGAGTGGCGTGTCTTTGAAGGGAAATTCATATTTTTTCGCTCGAGAGGTA 1483
Query 1508 ACAATAGAGGAAGAAG-----AA-GAAGAA--GT-GATATCACA-ACCGAGAGATTATTT 1557
|||| ||||| ||||| || ||||| || | || || | | || |||||||||
Sbjct 1484 ACAACAGAGGCAGAAGTGGGGAAAGAAGACTTGTTGGTAACAGAGATTGA-AGATTATTT 1542
Query 1558 ACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTTTGTCTCTGCCGTTTAACCC 1617
||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1543 ACTCTGTTTTGATGTTACAACAGAGAGATTTGGACCGCGTTTGTCTCTGCCGTTTAACCC 1602
Query 1618 TCCCTCTCCTAATTTTGACTATTTGACTCTATCATGGGCTAGAGATGAGAAGCTGGCTGT 1677
||||||||||| |||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1603 TCCCTCTCCTATTTTTGAATATTTGACTCTATCTTGGGCTAGAGATGATAAGCTCGCTGT 1662
Query 1678 GTTATATAACCACTACAACACA-CGTGAGATTATA-GAGATTTGGATTTCGACTAAGATT 1735
|||||||| ||||||| ||||| | ||||||| || ||||||||||||||||||||||||
Sbjct 1663 GTTATATAGCCACTACGACACATC-TGAGATT-TACGAGATTTGGATTTCGACTAAGATT 1720
Query 1736 GAACCCAACACGGTATCGTGGAGCACTTTTTTGACAGTGGATACGTCACTAATCAATGGT 1795
|| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1721 GAGCCCAACGCCGTATCGTGGAGCACTTTTTTGACAGTGGATAAGTCACTAATCAATGGT 1780
Query 1796 TTACCGGATCGTTTTTCAACTTTCTATGGACC-TAGGAGCTTCTTCATTGATGAGGAGAA 1854
|| | | |||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 1781 TT------T--T----CAACTTTCTATG-ACCCTATGAGCTTCTTCATTGATGAGGAGAA 1827
Query 1855 GAAAGTCGCTGTGTTTTTTGATAATAAAGGGACCGAGACCGGTTGTTACCAAGTGGCTTA 1914
|||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 1828 GAAAGTAGCTGTGTTTTTTGATATTAAAGGGACCGAGACCGGTTGTTACCAAATCGCTTG 1887
Query 1915 CATCATTGGAGATAATGGATACTTCAAATCTGTCAAAATTGGAGTAATCTCGAACTCCCA 1974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1888 CATCATTGGAGATAATGGATACTTCAAATCTGTCAACATTGGAGTAATCTCGAACTCCCA 1947
Query 1975 GTGGCAACAAGGCATACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCAACTACAAGA 2034
|||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1948 GTGGAAACAAGGCAAACTTGTGTGCTCTTCATATGTTCCAAGTTTAGTGCAACTGCAAGA 2007
Query 2035 TTAG 2038
||||
Sbjct 2008 TTAG 2011
Score = 756 bits (409), Expect = 0.0
Identities = 702/835 (84%), Gaps = 53/835 (6%)
Strand=Plus/Plus
Query 333 ATGATCAAGTCGAGATATCTCAAGTCTATCATTGCGATGGCTTATTGTTATGCATCGCCA 392
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1119 ATGATCAAGTCGAGATATCTCAAGTCTATCACTGCGATGGCTTATTGTTATGCATCGCCA 1178
Query 393 AAGAGAACTCGAATGTCTT-T-GTGTGGAATCCGTATTTGGGGCAAACGAAATGGATTCG 450
|| | |||||| | ||||| | || |||||||||||| ||||||||||||||||||||||
Sbjct 1179 AAAATAACTCG-A-GTCTTATGGTATGGAATCCGTATCTGGGGCAAACGAAATGGATTCG 1236
Query 451 ACCAAGAAACACATTCCACAGATATGACAGGTTTGCTCTTGGATACGACAACAACCGTAA 510
||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1237 ACCCAGAAACACATTCCACAGAGCTGACAGCTTTGCTCTTGGATACGACAACAACCGTAA 1296
Query 511 CCACAAAATCTTGAGGTTTCTCTATGATGAAGAGAGCAAC-GAAAGCAGTCGAAGAACTC 569
||||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| | |
Sbjct 1297 CCACAAAATCTTGAGGTTTCTTTATGATGCCGAGAGAAACAGAAC-CGGTC-AAGGA-TG 1353
Query 570 A--CATTGATGTATACGATTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCAAT-CCTG 626
||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
Sbjct 1354 GGTCATTGATGTATACGATTTTAGTTCTGATTCATGGAGGGTTCTTGATGTTAATGCC-G 1412
Query 627 ACTGTGAT-ATACCGTTTTATCAGACCGGAGTGTCTTTGAAGGGAAATACTTACTTCTTC 685
| || ||| | || ||||||||||| || |||||||||||||||||| | || || |||
Sbjct 1413 ATTGGGATGA-ACTGTTTTATCAGAGTGGCGTGTCTTTGAAGGGAAATTCATATTTTTTC 1471
Query 686 GGTCAAGAAGTGACA-CA-AG-C-GACG-----AAAG-----T-------AACAGAGATT 724
| || ||| || ||| || || | || | |||| | ||||||||||
Sbjct 1472 GCTCGAGAGGTAACAACAGAGGCAGAAGTGGGGAAAGAAGACTTGTTGGTAACAGAGATT 1531
Query 725 GAA-ACTTGTTTACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCT 783
||| | || |||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1532 GAAGA-TTATTTACTCTGTTTTGATGTTACAACAGAGAGATTTGGACCGCGTTTGTCTCT 1590
Query 784 GCTGTTTTACCCTCCCTGTCCTAGTTTTGAA-ACTGTGACTCTATCTTGGGTTAGAGATG 842
|| |||| ||||||||| ||||| ||||||| | | ||||||||||||||| ||||||||
Sbjct 1591 GCCGTTTAACCCTCCCTCTCCTATTTTTGAATATT-TGACTCTATCTTGGGCTAGAGATG 1649
Query 843 AGAAGCTCGCTGTGTTATACAACCACTACGTCACAGCTGAGATTATA-GAGATTAGGATT 901
| ||||||||||||||||| | |||||||| |||| |||||||| || |||||| |||||
Sbjct 1650 ATAAGCTCGCTGTGTTATATAGCCACTACGACACATCTGAGATT-TACGAGATTTGGATT 1708
Query 902 TCGACTAAGATTGAACCCAATGCGGTATCCTGGAGCTCTTTTTTGACTGTGGATATGTCA 961
|||||||||||||| ||||| || ||||| |||||| |||||||||| ||||||| ||||
Sbjct 1709 TCGACTAAGATTGAGCCCAACGCCGTATCGTGGAGCACTTTTTTGACAGTGGATAAGTCA 1768
Query 962 CTAGTCAATGGTTTACCGGATCATTTTTCGATGTACTTTGAAGCTAAGAGCTTCTTCATT 1021
||| |||||||||| | | | ||| | ||| || | | | |||||||||||||
Sbjct 1769 CTAATCAATGGTTTTTCA-A-C-TTTCT--ATG-ACCCT-A---T--GAGCTTCTTCATT 1816
Query 1022 GACGAGGAGAAGAAAGTTGTTGTGCTTTTTGATAGTAAAGAGATCAAGACCTGTCGCTAC 1081
|| |||||||||||||| | |||| ||||||||| ||||| || | ||||| || | |||
Sbjct 1817 GATGAGGAGAAGAAAGTAGCTGTGTTTTTTGATATTAAAGGGACCGAGACCGGTTGTTAC 1876
Query 1082 CAAATGGCTTACATCGTTGGAGATGATGGATACTTCAAATCTGTCAACATTGGAG 1136
||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1877 CAAATCGCTTGCATCATTGGAGATAATGGATACTTCAAATCTGTCAACATTGGAG 1931
Score = 656 bits (355), Expect = 0.0
Identities = 654/792 (83%), Gaps = 46/792 (6%)
Strand=Plus/Plus
Query 1187 TTATGCATCGCCGAAGACAACTCG-GGACT-TGTGGTATGGAATCCGTAT-TTGTGTCAA 1243
|||||||||||| |||| |||||| || || | | || |||||||||||| | | | |||
Sbjct 356 TTATGCATCGCCAAAGATAACTCGAGG-CTCT-TTGTGTGGAATCCGTATCTAG-GGCAA 412
Query 1244 ACCAAATGGATTCGACTTAGAAACACA-TTCCACAGATATGAC-GTGTTTGCTCTTGGAC 1301
||||||||||| | || ||||||| | ||||||| ||||||| | ||||||||| |||
Sbjct 413 ACCAAATGGATCCAACCAAGAAACA-AGTTCCACAAATATGACAG-GTTTGCTCTCGGAT 470
Query 1302 ACGACAACAACCGTAACCACAAAATCTTGAGGTTTCTTTATGATGCCA-AGAAGTACAGA 1360
||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||
Sbjct 471 ACGACAACAACCGTAACCACAAAATCTTGAGGTTTCTTTATGATGA-AGAGAACAAC-GA 528
Query 1361 AC-CGGTCGCGGA-CGCGACAATGATGTCTACGATTTTAGCTCTGATTCATGGAGGAGGG 1418
| | |||| || | | ||| |||||| |||||||| |||||||||||||||||| |
Sbjct 529 AAGCTGTCGAAGAACTC-ACATTGATGTATACGATTTCAGCTCTGATTCATGGAGG-G-- 584
Query 1419 TTTTTGATGTTAATCCCCACAGGGGTG--A-AC-TGTTTTATTACAGTGGCGTGTCCTTG 1474
|| ||||||| ||||| || ||| | | || | |||||| ||| |||||||| |||
Sbjct 585 TTCTTGATGTCAATCCTGACTGGGATATTATACCT-TTTTATCGCAGCGGCGTGTCTTTG 643
Query 1475 AAGGGAAATTCATACTTTTTCGGTCAAGAGGTAACAATAGAGGAAGAAGAAGAAGAAGTG 1534
||||||||| | ||||| ||||||||||| |||||| | || || | | | | ||
Sbjct 644 AAGGGAAATACTTACTTCTTCGGTCAAGAAGTAACAC-A-AGC--GA-GTA-A-G--GT- 693
Query 1535 ATATCACAACCGAGAGA-TTATTTACTATGTTTTGATTTTACAACCGAGAGATTTGGACC 1593
| | || ||| || | || |||||| ||||||||||||||||| ||||||||||||||
Sbjct 694 A-A-CA-AACATTGAAACTTGTTTACTCTGTTTTGATTTTACAACAGAGAGATTTGGACC 750
Query 1594 GCGTTTGTCTCTGCCGTTTAACCCTCCCTCTCCTAATTTTGACTATT-TGACTCTATCAT 1652
|||||| |||||| |||| ||||||| | ||||| |||||| | | |||||||||| |
Sbjct 751 ACGTTTGCCTCTGCTGTTTCACCCTCCATGTCCTAGTTTTGAA-ACTGTGACTCTATCTT 809
Query 1653 GGGCTAGAGATGAGAAGCTGGCTGTGTTATATAACCACTACAACACA-CGTGAGATTATA 1711
||| ||||||||||||||| ||||||||||| ||||||||| |||| | ||||||||||
Sbjct 810 GGGTTAGAGATGAGAAGCTCGCTGTGTTATACAACCACTACGTCACATC-TGAGATTATA 868
Query 1712 GAGATTTGGATTTCGACTAAGATTGAACCCAACACGGTATCGTGGAGCACTTTTTTGACA 1771
|||||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct 869 GAGATTAGGATTTCGACTAAGATTGAACCCAATGCGGTATTGTGGAGCTCTTTTTTGACA 928
Query 1772 GTGGATACGTCACTAATCAATGGTTTACCGGATCG-TTTTTCAACTTT-CTATGGACCTA 1829
||||||| |||| || ||||||||||||||||| | |||||| | | | || || | |||
Sbjct 929 GTGGATATGTCAGTAGTCAATGGTTTACCGGAT-GATTTTTCGA-TGTACTTTGAAGCTA 986
Query 1830 GGAGCTTCTTCATTGATGAGGAGAAGAAAGTCGCTGTGTTTTTTGATAATAAAGGGACCG 1889
||||||||||||||| |||||||||||||||| |||| ||||||||| ||||| || ||
Sbjct 987 AGAGCTTCTTCATTGACGAGGAGAAGAAAGTCGTTGTGCTTTTTGATAGTAAAGTGATCG 1046
Query 1890 AGACCGGTTGTTACCAAGTGGCTTACATCATTGGAGATAATGGATACTTCAAATCTGTCA 1949
||||| || | |||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1047 AGACCTGTCGCTACCAAATGGCTTACATCGTTGGAGATGATGGATACTTCAAATCTGTCA 1106
Query 1950 AAATTGGAGTAA 1961
| || |||||||
Sbjct 1107 ACATCGGAGTAA 1118
> Ahg921240 jgi|Araly1|921240|scaffold_102521.1
Length=1321
Score = 172 bits (93), Expect = 7e-42
Identities = 310/409 (76%), Gaps = 38/409 (9%)
Strand=Plus/Plus
Query 128 GTGCGATCTACTTGTAAAAAGTGGAATGCTTTATCGAAAAATCAGATCTTTGGTAGAAAA 187
||||| || ||||| ||| |||||| |||||| | ||| || | | ||||| | |||
Sbjct 99 GTGCGTTCCACTTGCAAATTGTGGAAAGCTTTAACCAAAGATTGGGT-TTTGG--GTAAA 155
Query 188 ACAGCAGCAAGGAATCAATTTCTAGAGTTCATGATTCTAGATTCTAGAGTTTGTTCTTTG 247
|||||| ||| | || ||| | | |||||||| | ||||| | ||||||||| ||
Sbjct 156 GGAGCAGCTAGGGAGCAGTTTTTGGGGTTCATGACGATGGATTCAAAAGTTTGTTCACTG 215
Query 248 AGATTAGATCTTCAAGGAATCCGTAACGAAGACAAAGAAGACTTCGTTGATCCATCTATG 307
||||| ||||| | ||| || |||| | ||||| || ||||||| ||||||
Sbjct 216 AGATTCCATCTT---TG---CCGCAATGAAG---ATGAAGAATTGGTTGATCTATCTATA 266
Query 308 AAGCTA-ATAAGTATACCTAGTAATGATGATCAAGTCGAGATATCTCAAGTCTATCATTG 366
|||| | || || || | || | | | |||||||| |||| |||||||| ||| ||
Sbjct 267 AAGC-AGAT-AG-AT---T--TACTCA--ACCAAGTCGATATATATCAAGTCTTTCACTG 316
Query 367 CGATGGCTTATTGTTATGCATCGCCAAAGAGAACTCGAATG-TCTTTGTGTGGAATCCGT 425
||| ||||||||||||||| ||| |||||| ||||| || | || |||||||||| || |
Sbjct 317 CGACGGCTTATTGTTATGCGTCGGCAAAGATAACTC-AAGGCTCATTGTGTGGAACCCTT 375
Query 426 ATTTGGGGCAAACGAAA-TGGATTCG-A-CCAAGAAACACATTCCACAGATA-T-GACAG 480
||||||| ||||| ||| |||| ||| | |||| ||| | ||| ||| || | | ||||
Sbjct 376 ATTTGGGTCAAAC-AAAGTGGA-TCGTACCCAA-AAA-A-ATT-CAC-GA-ACTCGACAC 427
Query 481 GTTTGCTCTTGGATACGACAACAACCGTAACCACAAAATCTTGAGGTTT 529
|| |||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 428 GTATGCTCTAGGATACGATATCAACCGTAACCACAAAATCTTGAGGTTT 476
Score = 80.5 bits (43), Expect = 4e-14
Identities = 120/155 (77%), Gaps = 13/155 (8%)
Strand=Plus/Plus
Query 1187 TTATGCATCGCCGAAGACAACTC-GGGACTTGTGGTATGGAATCCGTATTTGTGTCAAAC 1245
|||||| ||| | |||| ||||| || || | || ||||| || |||||| ||||||
Sbjct 330 TTATGCGTCGGCAAAGATAACTCAAGG-CTCATTGTGTGGAACCCTTATTTGGGTCAAA- 387
Query 1246 CAAA-TGGATTCG-ACTTAGAAACACATTCCACAGATA-T-GACGTGTTTGCTCTTGGAC 1301
|||| |||| ||| || | ||| | ||| ||| || | | ||| || |||||| |||
Sbjct 388 CAAAGTGGA-TCGTACCCA-AAA-AAATT-CAC-GA-ACTCGACACGTATGCTCTAGGAT 441
Query 1302 ACGACAACAACCGTAACCACAAAATCTTGAGGTTT 1336
|||| | ||||||||||||||||||||||||||||
Sbjct 442 ACGATATCAACCGTAACCACAAAATCTTGAGGTTT 476
> Ahg905088 jgi|Araly1|905088|Al_scaffold_0003_2216
Length=1044
Score = 102 bits (55), Expect = 9e-21
Identities = 89/105 (85%), Gaps = 4/105 (4%)
Strand=Plus/Plus
Query 77 GATTTGGTAG-GTGATATTCTTTCTAGGGTTCCATTTACATCT-CTAATCTCAGTGCGAT 134
|||||||||| | || ||||| ||||||||||| || |||||| | | |||||||||
Sbjct 25 GATTTGGTAGAG-GAGATTCTCTCTAGGGTTCCGTTGACATCTAC-GAGAGCAGTGCGAT 82
Query 135 CTACTTGTAAAAAGTGGAATGCTTTATCGAAAAATCAGATCTTTG 179
||||||||||||||||||| |||||||| ||| |||||| |||||
Sbjct 83 CTACTTGTAAAAAGTGGAACGCTTTATCCAAAGATCAGAGCTTTG 127
> Ahg479597 jgi|Araly1|479597|fgenesh2_kg.3__2298__AT3G20710.1
Length=1128
Score = 80.5 bits (43), Expect = 4e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 740 TGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGC 785
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGC 703
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 76.8 bits (41), Expect = 6e-13
Identities = 266/369 (72%), Gaps = 37/369 (10%)
Strand=Plus/Plus
Query 581 TACGATTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCAATCCTGACTGTG-A-TATAC 638
|||||||||| ||||||||||||||||||||||||||||| ||| ||||| | | | ||
Sbjct 596 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGACTG-GCACT-TAA 653
Query 639 CGTTTTAT-CAG-ACCGGAGTGTCTTTGAAGGGAAATACTTACTTCTTCGGTCAAGA-A- 694
| | || || | || |||||| | ||||||||| | |||| || | | |||| |
Sbjct 654 GGACT-ATTCACCAT-GGCGTGTCTCTCAAGGGAAATGCGTACTGGTTTGCTGAAGAGAA 711
Query 695 GTGACACAAGCGACGAAAGTAACAGA-GATTGAAACTTGTTTACTCTGTTTTGATTTTAC 753
|| | | | || | || || ||| |||| || || | ||||||||||||| ||
Sbjct 712 GT-ATTCC-GAAACCAGAGAAATAGACGATTTT---TTCTT-AGTCTGTTTTGATTTCAC 765
Query 754 AACAGAGAGATTTGGACCGTGTTTGCCTCTGCTGTTTTACCCTCCCTGTCCTAGTTT-TG 812
|| ||||| |||||| ||| ||||||||| | |||| | | || | | |||| ||
Sbjct 766 AAGAGAGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGT-T---TG-C-T-GTTTCTG 818
Query 813 AA-A--CTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGCTGTGTTATA-CAACCAC 868
|| | || ||| | ||||| | |||||||| ||| |||| ||||| ||||| || ||
Sbjct 819 AAGATGCTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATATCAGCCG- 877
Query 869 TACG-TCACAGCTGAGATTATAGAGAT-TAGGATTTCGACTAAGATTGAACCCAATGCGG 926
| | | ||| | | | || ||||| | || || || |||||||||| ||||| ||||
Sbjct 878 TGGGAT-ACAT-TAA-AG-ATGGAGATCTGGG-TTACGTCTAAGATTGAGCCCAACGCGG 932
Query 927 TATCCTGGA 935
| |||||||
Sbjct 933 TCTCCTGGA 941
> Ahg900496 jgi|Araly1|900496|Al_scaffold_0004_1146
Length=1275
Score = 75.0 bits (40), Expect = 2e-12
Identities = 51/56 (91%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 1557 TACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTTTGTCTCTGCCGTTT 1612
|||||| ||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 776 TACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-TTT 830
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 73.1 bits (39), Expect = 7e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1006 TAAGAGCTTCTTCATTGACGAGGAGAAGAAAGTTGTTGTGCTTTTTGA 1053
|||||| |||||||||||||||||||||||||||| |||| |||||||
Sbjct 972 TAAGAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 1019
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 73.1 bits (39), Expect = 7e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1006 TAAGAGCTTCTTCATTGACGAGGAGAAGAAAGTTGTTGTGCTTTTTGA 1053
|||||| |||||||||||||||||||||||||||| |||| |||||||
Sbjct 1368 TAAGAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 1415
> Ahg929147 jgi|Araly1|929147|scaffold_301604.1
Length=1290
Score = 71.3 bits (38), Expect = 3e-11
Identities = 226/313 (72%), Gaps = 28/313 (9%)
Strand=Plus/Plus
Query 733 TTTACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGCTGTTTTA 792
||| |||||||| |||| |||||||||||| ||||| ||| || | | ||| | |||| |
Sbjct 744 TTTGCTCTGTTTCGATTATACAACAGAGAGCTTTGGTCCGCGTCTACTTCTACCGTTTAA 803
Query 793 CCCTCCCTGTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGC 852
|||| | ||| | | || || ||| || |||| || ||| || | ||| ||||||
Sbjct 804 CCCT-CATGT--T-G--AAGAGACCGTGGCTTTATCATGTGTTGGAAAAGAGCGGCTCGC 857
Query 853 TGTGTTATA-C-AACCACTACGTCACAGCTGAGAT-TATAGAGATTA-GGATTTC-GACT 907
| || |||| | || | | | | ||| ||||| | ||||||| || || | | || |
Sbjct 858 TATGCTATATCAAAGCTCCAAG--ACATCTGAG-TCGATAGAGA-TATGGGTAACAGA-T 912
Query 908 AAGATTGAACCCAATGCGGTATCCTGGAGCTCTTTTTTGACTGTGGATATGTCACTAGTC 967
|||||||| || || ||||| || |||||| ||| ||| |||||||| ||| | ||
Sbjct 913 AAGATTGATCCAAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACACCACTC 972
Query 968 AATGGTTTACCGGATCATTTTTCGATGTACTTTGAAGCTAAGAGCTTCTTCATTGACGAG 1027
| |||||| |||| || || | ||| | ||| | || |||||||||||||||
Sbjct 973 ACTGGTTTTCCGG-------TT-GA--CA-TTT-ACGCTGATAGTTTCTTCATTGACGAG 1020
Query 1028 GAGAAGAAAGTTG 1040
|||||||||||||
Sbjct 1021 GAGAAGAAAGTTG 1033
Score = 63.9 bits (34), Expect = 4e-09
Identities = 52/60 (87%), Gaps = 3/60 (5%)
Strand=Plus/Plus
Query 470 AGATATGACAGGTTTGCTCTTGGATACG---ACAACAACCGTAACCACAAAATCTTGAGG 526
|||| ||| | || ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 439 AGATGTGATATGTATGCTCTTGGTTACGACAACAACAACCGTAACCACAAAATCTTGAGG 498
Score = 63.9 bits (34), Expect = 4e-09
Identities = 52/60 (87%), Gaps = 3/60 (5%)
Strand=Plus/Plus
Query 1277 AGATATGACGTGTTTGCTCTTGG--AC-ACGACAACAACCGTAACCACAAAATCTTGAGG 1333
|||| ||| ||| ||||||||| || || |||||||||||||||||||||||||||||
Sbjct 439 AGATGTGATATGTATGCTCTTGGTTACGACAACAACAACCGTAACCACAAAATCTTGAGG 498
> Ahg929143 jgi|Araly1|929143|scaffold_301600.1
Length=1256
Score = 69.4 bits (37), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1990 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCAACTACAA 2032
||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1107 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCCACTGCAA 1149
> Ahg327685 jgi|Araly1|327685|fgenesh1_pm.C_scaffold_6002905
Length=1017
Score = 69.4 bits (37), Expect = 1e-10
Identities = 51/57 (89%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 1557 TACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTT-TGTCTCTGCCGTTT 1612
|||| | |||||||||||||||||||||||||||||||| || || ||||||| |||
Sbjct 542 TACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGC-TTCTGCCTCTGCC-TTT 596
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 579 TATACGATTTTAGCTCTGATTCATGGAGGGTTCTTGATG 617
||||||| |||||||||||||||||||||||||||||||
Sbjct 553 TATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATG 591
> Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1
Length=3192
Score = 67.6 bits (36), Expect = 3e-10
Identities = 50/57 (88%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 734 TTACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGCTGTTT 790
|||||||||||||||||||||||||||| |||||| | | || ||||||| | ||||
Sbjct 2578 TTACTCTGTTTTGATTTTACAACAGAGACATTTGGTCTGCGTCTGCCTCTTCCGTTT 2634
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 65.8 bits (35), Expect = 1e-09
Identities = 51/58 (88%), Gaps = 4/58 (7%)
Strand=Plus/Plus
Query 735 TACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCG-TGT-TTGCCTCTGCTGTTT 790
|||| ||||||||||||||||||||||||||||||| | | | || ||||||| ||||
Sbjct 1280 TACTGTGTTTTGATTTTACAACAGAGAGATTTGGACAGAT-TCTT-CCTCTGCCGTTT 1335
> Ahg951995 jgi|Araly1|951995|scaffold_28600002.1
Length=555
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1990 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 2023
||||||||||||||||||||||||||||||||||
Sbjct 502 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 535
> Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1
Length=672
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1990 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 2023
||||||||||||||||||||||||||||||||||
Sbjct 627 ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 660
> Ahg333398 jgi|Araly1|333398|fgenesh1_pm.C_scaffold_769000001
Length=924
Score = 63.9 bits (34), Expect = 4e-09
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 740 TGTTTTGATTTTACAACAGAGAGATTTGGACCGTGT-TTGCCTCTGC 785
||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 451 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTT-CCTCTGC 496
> Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703
Length=1092
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 587 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 617
|||||||||||||||||||||||||||||||
Sbjct 478 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 508
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 587 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 617
|||||||||||||||||||||||||||||||
Sbjct 475 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76637572940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5