BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49530.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937757 jgi|Araly1|937757|scaffold_501948.1 2121 0.0
> Ahg937757 jgi|Araly1|937757|scaffold_501948.1
Length=1450
Score = 2121 bits (1148), Expect = 0.0
Identities = 1354/1455 (93%), Gaps = 7/1455 (0%)
Strand=Plus/Plus
Query 175 TTCGTTTAAAAGAGCAGCATCAATGAATCAGAATCTTCATGTATTATCAATGGATTCGTT 234
|||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTCG-TTAAAA-AGCAGCATCAATGAATCAGAATCTTCAAGTATTATCAATGGATTCGTT 58
Query 235 ACCAGTTGGATTAAGATTCCGTCCAACAGACGAGGAGCTAATCCGTTACTATCTCCGTAG 294
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 59 ACCAGTTGGATTAAGATTCCGTCCTACAGACGAGGAGCTCATCCGCTACTATCTCCGGAG 118
Query 295 GAAAATCAACGGTCACGATGACGACGTCAAAGCTATCCGTGAGATCGATATTTGCAAATG 354
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 119 GAAAATCAACGGCCACGATGACGACGTCAAAGCTATTCGTGAGATCGATATTTGTAAATG 178
Query 355 GGAACCTTGGGATTTACCTGATTTTTCTGTGATCAAAACTAAAGACTCAGAGTGGCTCTA 414
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 GGAACCTTGGGATTTACCTGATTTTTCTGTGATCAAAACTAAAGATTCAGAGTGGCTCTT 238
Query 415 CTTCTGTCCATTGGATCGGAAGTATCCGAGTGGAAGTAGACAGAACCGGGCAACAGTTGC 474
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 CTTCTGTCCATTGGATCGGAAGTATCCGAATGGAAGTAGACAGAACCGGGCAACAGTTGC 298
Query 475 AGGGTACTGGAAAGCCACAGGAAAAGACCGGAAGATAAAATCCGGTAAGACTAACATTAT 534
||| || ||||| || || |||||||||||||||||||| || ||||| ||||| |||||
Sbjct 299 AGGCTATTGGAAGGCGACTGGAAAAGACCGGAAGATAAAGTCTGGTAAAACTAATATTAT 358
Query 535 TGGTGTGAAGAGAACTCTAGTTTTCCACGCGGGTAGAGCTCCTAGGGGGACACGAACCAA 594
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 359 TGGTGTGAAGAGAACTCTGGTTTTCCACGCGGGTCGAGCTCCTAGGGGAACACGAACCAA 418
Query 595 TTGGATTATTCATGAGTATCGTGCCACGGAGGATGATCTTAGTGGTACCAATCCTGGCCA 654
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 TTGGGTTATTCATGAGTATCGTGCCACGGAGGATGATCTTAGTGGCACCAATCCTGGCCA 478
Query 655 GAGTCCGTTTGTTATATGCAAATTGTTCAAGAAAGAAGAACTGGTTTTAGGGGAAGAAGA 714
|| ||||||||| ||||| ||||||||||||||| |||||||| ||||| ||||||||
Sbjct 479 GAATCCGTTTGTCATATGTAAATTGTTCAAGAAACAAGAACTGAATTTAGCAGAAGAAGA 538
Query 715 TTCGAAGTCAGATGAAGTTGAAGAACCTGCTGTCTCGTCTCCAACTGTCGAAGTGACTAA 774
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 539 TTCGAAGTCGGATGAAGTTGAAGAACCTGCTGTCTCGTCTCCAACTGTTGAAGTGAGTAA 598
Query 775 GTCAGAAGTATCTGAGGTAATTAAAACAGAAGACGTGAAGCGTCATGACATAGCAGAATC 834
|||||||||||||||||| | |||||| ||||| |||||||||| |||| | ||||||||
Sbjct 599 GTCAGAAGTATCTGAGGTCACTAAAACCGAAGATGTGAAGCGTCTTGACGTTGCAGAATC 658
Query 835 TTCTCTTGTAATCTCTGGAGATTCTCATAGTGATGCTTGTGATGAGGCTACAACCGCAGA 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 659 TTCTCTTGTAATCTCTGGAGATTCTCATAGTGATGCTTGTGATGAGGCTACAACTGCCGA 718
Query 895 GCTTGTAGATTTTAAATGGTATCCGGAATTGGAGTCCTTAGATTTCACGCTGTTCTCTCC 954
||||||||||||| | ||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 719 GCTTGTAGATTTTGATTGGTATCCGGAATTGGAGTCCCTGGATTACACGCTGTTCTCTCC 778
Query 955 ATTACACTCTCAAGTCCAATCTGAGCTTGGATCCTCTTACAACACATTCCAGCCTGGCTC 1014
|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 779 ATTACATTCTCAAGTTCAATCCGAGCTTGGATCATCTTACAACACATTCCAGCCTGGCTC 838
Query 1015 GAGTAATTTTTCAGGGAACAACAACAACAGCTTCCAAATCCAGACTCAGTATGGTACAAA 1074
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 GAGTAATTTTTCAGGGAACAACAACAACAGCTTCCAAATTCAGACTCAGTATGGTACAAA 898
Query 1075 TGAAGTAGATACGTATATATCTGATTTTCTTGATTCGATTCTCAAGAGCCCAGACGAGGA 1134
|||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 899 TGAAGTAGATACATATATATCCGAGTTTCTTGATTCGATTCTTAAGAGCCCAGACGAGGA 958
Query 1135 TCCAGAGAAGCACAAGTATGTTTTGCAAAGTGGTTTTGATGTTGTAGCACCAGATCAGAT 1194
||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 959 TCCGGAGAAGCACAAGTATGTTTTGCAGAGTGGTTTTGATGGTGCAGCACCAGATCAGAT 1018
Query 1195 TGCGCAAG-TGTGTCAACAGGGCTCAGCAGTTGACATGAGCAATGATGTTTCAGTGACGG 1253
||||| || | | ||| ||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 1019 TGCGCCAGCT-TATCAGCAGAGCTCAGCAGTTAACATGAGCAATGATGTTTCAGTAACGG 1077
Query 1254 GTATCCAGATTAAGAGTCGCCAGGCACAACCCTCAGGTTATACCAATGACTATATAGCGC 1313
||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1078 GTATCAAGATTAAGAGTCGGCAGGCACAATCCTCAGGTTGTACCAATGACTATATAGCGC 1137
Query 1314 AGGGAAATGGTCCAAGAAGGCTGCGTCTGCAAAGTAACTTTAATGGCATTAACACGAAGA 1373
|||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1138 AGGGAAATGGCCCGAGAAGGCTGCGTCTGCAAAGTAACCTTAATGGCATTAACTCGAAGA 1197
Query 1374 ATCCTGAGCTTCAAGCTATAAAGAGAGAGGCTGAGGACACGGTTGGAGAAAGTATAAAGA 1433
|||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct 1198 ATCCAGAGCTTCAAGCTATCAAGAGAGAGGCTGAGGACACGGTTGGAGAAACTTTAAAGA 1257
Query 1434 AAAGGTGTGGAAAGCTAATGAGATCAAAGAACGTGACCGG-TTTTGTGTTTAAAAAGATT 1492
|| ||||||||| ||||| ||||||||||||||| || || |||||||||||||||||||
Sbjct 1258 AAGGGTGTGGAAGGCTAAAGAGATCAAAGAACGTAAC-GGATTTTGTGTTTAAAAAGATT 1316
Query 1493 ACGTCGGTGAAATGTTCATATGGAGGACTCTTTAGGGCGGCAGTAGTTGCAGTTGTGTTC 1552
| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1317 ATGTCGGTGAAATGTTCATACAGAGGACTCTTTAGGGCGGCGGTAGTTGCAGTTGTGTTC 1376
Query 1553 TTGATGTCAGTCTGCAGTCTAACCGTCGACTTCAGAGCATCTGCAGTGTCCTGAAAACTG 1612
|||||||||||||||||||||||||| |||||||||||||||||| || |||||| ||
Sbjct 1377 TTGATGTCAGTCTGCAGTCTAACCGTAGACTTCAGAGCATCTGCAATGCCCTGAACACA- 1435
Query 1613 AAACTTTTTGTAAAT 1627
|||||||||||||||
Sbjct 1436 AAACTTTTTGTAAAT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5