BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49540.1
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485310 jgi|Araly1|485310|fgenesh2_kg.5__1302__AT3G49540.1 1053 0.0
> Ahg485310 jgi|Araly1|485310|fgenesh2_kg.5__1302__AT3G49540.1
Length=672
Score = 1053 bits (570), Expect = 0.0
Identities = 642/675 (95%), Gaps = 11/675 (2%)
Strand=Plus/Plus
Query 117 ATAATAATGGGTGGCTGTGCGAGTAGACCCAAGGAATCAGACATGCAA-AACGAAGAAGG 175
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATAATAATGGGTGGCTGTGCGAGTAGACCCAAGGAATCAGACATG-AACAACGAAGAAGG 59
Query 176 CTCTGTTCCTAACAAGCCTGTCTCTGAAAACGTAGTAGCCAAGGAGAACAACACAGAAAG 235
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 60 CTCTGTTCCTAACAAGCCTGTGTCTGAAACCGTAGTAGCCAAGGAGAACAACACAGAAAG 119
Query 236 CGGTGAGAAACAGAACCAGACAGTGGCTGAGACCACTGAAACAACTTCTGTCGAAGCTAA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGGTGAGAAACAGAACCAGACAGTGGCTGAGACCACTGAAACAACTTCTGTCGAAGCTAA 179
Query 296 GGAGACATTTCCGGTCGAGCCGACCAAGGAAACAACTCCTGCTGTTCAACCAGAGGTTGC 355
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GGAGACATCTCCGGTCGAGCCGACCAAGGAAACCACTCCTGCTGTTCAACCAGAGGTTGC 239
Query 356 AGCCGTCGAAGAGTCTTCTTCTGCTGATGCTGGTGAGGCTGCAGTAGTTGCACCTGAGAA 415
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 240 AGCCGTCGAAGAGTCTTCTTCTGCTGCTGCTGGTGAGGCTGCAGAAGCCGCACCTGAGAA 299
Query 416 AGTGGAGAACGCTGCAACAGAAAACGCTGAAGCAAAGGTGGAGGCGGTTGCCGTAGCTGC 475
||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 300 AGTGGAGAAGGCTGCAACAGAAAACGTTGAAGCAAAGGTGGATGCGGTTGCAGTAGCTGT 359
Query 476 ACCCGAAAAGGTTGAGGTTGCAGTGGAAGCGGAGAAAAAGGCTGAAGCTGAACCAGTAAA 535
||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 360 ACCTGAAAAGGTTGAGGTTGCGGTGGAAGCGGAGAAAAAGGCTGAAACTGAACCAGTAAA 419
Query 536 GGCTGAGGCTGAACCAGTAAA-AGCTGAGGCTGAACCAGTAAAGGAGGAGAGTAAACAAG 594
||||||||||||||||||||| | | ||||||| |||||||||||||||||||||| |||
Sbjct 420 GGCTGAGGCTGAACCAGTAAAGACC-GAGGCTGGACCAGTAAAGGAGGAGAGTAAAAAAG 478
Query 595 AAGAGAAAGAAGCTGTTGTCACCGTTTGATGATTAATTAAATTTGTGAAAGTATTTTGAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGAGAAAGAAGCTGTTGTCACCGTTTGATGATTAATTAAATTTGTGAAAGTATTTTGAA 538
Query 655 TGTTGTTGTATGTCACCTTG----G-TTTGATTTGCTACTACCAGATTGGTTTGGCTTTT 709
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 539 TGTTGTTGTATGTCACCTTGATTTGATTTGATTTGCTACTACCAGATTGGTTTGGCTTT- 597
Query 710 GTT-GTTCTTTGTATCTCAAAATGATTCTTCTTTGATTCAATTAAATATAAATCAGTTTT 768
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTTGTTCTTTGTATCTCAAAATGATTCTTCTTTGATTCAATTAAATATAAATCAGTTTT 657
Query 769 GCATCGTGAAAATTT 783
|| || ||||| |||
Sbjct 658 GCTTCTTGAAACTTT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28973416920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5