BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49550.1

Length=817
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485311 jgi|Araly1|485311|fgenesh2_kg.5__1303__AT3G49550.1         628    1e-179


> Ahg485311 jgi|Araly1|485311|fgenesh2_kg.5__1303__AT3G49550.1
Length=441

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 416/450 (92%), Gaps = 15/450 (3%)
 Strand=Plus/Plus

Query  118  ATGGAGGTATTTGGAAAATCTCATGTGGTTGTTGGCTCTGCTAATGTTATTTACTTATCT  177
            |||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||
Sbjct  1    ATGGAGGTATTTGGAAAATCTCATGT-G--GTTGGCTCTGCTAATGTTATTTACTTGTCT  57

Query  178  GCTATATTGGGTCACGAAGGACCCAA------TCACAAATGTGATTGGAAATGCGAGAAT  231
            ||| ||||||||| ||| ||||||||      ||||||||||||||||||||||||||||
Sbjct  58   GCTCTATTGGGTCGCGATGGACCCAATCCGTGTCACAAATGTGATTGGAAATGCGAGAAT  117

Query  232  GAGAATGTGTGTGGGAATATGTACCGTTGCAAACTAACTGGGTTGACTCATGTTTGTGAC  291
            |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  118  GAGAATGTTTGTGGGAATATGTACCGTTGCAAACTAACTGGGTTGACTCACGTCTGTGAC  177

Query  292  AAGAACTGCAACCAAAGGATTTTGTATGATAATCATAACTCTTTGTGTCGAGCTAGTGGT  351
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  178  AAGAACTGCAACCAAAGGATTTTGTATGATAACCATAACTCTTTGTGCCGAGCTAGTGGT  237

Query  352  CGGATTTTCCCGCTTTCTTTGGTTGAGGAACAGGCGGTTAAAGGAGTGAGGAGGAAGCTT  411
            ||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||
Sbjct  238  CGGATTTTCCCGCTTTCTTCGGCTGAGGAACAGGCGGTTAAAGGAGTTCGGAGGAAGCTT  297

Query  412  GATGATGAGAGTCAACAACAACCTTCTGAAAGTTGTGTTAAGCGTCGTCGACGTGATGCT  471
            |||||||||||||||||||  || |||||||| |||||||||||||||||||||||||||
Sbjct  298  GATGATGAGAGTCAACAAC--CC-TCTGAAAGCTGTGTTAAGCGTCGTCGACGTGATGCT  354

Query  472  CAGTTTCATTCTTCTCCTTTTGAGAGGTCTTTTGCTGCTGTGAGTCCTTTTTGCAGCCAA  531
            |||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||
Sbjct  355  CAGTTTCATTCTTCTCCTTTCGAGAGGTCTTTTGCTGCTGTGAGCCCAATTTGCAGCCAA  414

Query  532  GCTGGTGGAGATGGAATGGAGATTAACTAG  561
            |||||   ||||||||||||||| ||||||
Sbjct  415  GCTGG---AGATGGAATGGAGATGAACTAG  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30193350264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5