BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49560.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485312 jgi|Araly1|485312|fgenesh2_kg.5__1304__AT3G49560.1 1650 0.0
> Ahg485312 jgi|Araly1|485312|fgenesh2_kg.5__1304__AT3G49560.1
Length=1153
Score = 1650 bits (893), Expect = 0.0
Identities = 1073/1158 (93%), Gaps = 20/1158 (2%)
Strand=Plus/Plus
Query 1 AGAGATAAGACTGagaagcagagaaccgaaagaag-aaaacaa-aactctcgaagtcgca 58
||||||||||||||||||||||||||||||||||| |||| || || ||| ||||||||
Sbjct 1 AGAGATAAGACTGAGAAGCAGAGAACCGAAAGAAGAAAAAAAACAAAACTCAAAGTCGCA 60
Query 59 acag---aaaagaaacga-ga-gaGATATGGTGGTAGGCGGCGGAGGAGAAGGAGATCAG 113
|||| |||| ||| | || |||||||||||||| |||||||||| ||||| ||||
Sbjct 61 ACAGAAAAAAAAAAAAAAGGACGAGATATGGTGGTA---GGCGGAGGAGGAGGAGGTCAG 117
Query 114 AAGAGAAGCAGCGGAGAAATGATGGCGATGGCGAGTTTATTCAACGATCAGCAGAATCCA 173
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 AAGAGAAGCGGCGGAGAAATGATGGCGATGGCGAGTTTGTTCAACGATCAGCAGAATCCA 177
Query 174 ATTCAACAGTTTCAGGTTAAATTCAAAGAAGTAGAAACTAATTTCAAGACATGGTTGTCG 233
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 178 ATTCAACAATTTCAGGTTAAATTCAAAGAAGTAGAAACTAATTTCAAGACGTGGTTATCG 237
Query 234 AAACAGTCGATTCCGGTGGAAGCCGCCGTCGTATCCACCATGAGCGGTGTACAAGGAGCT 293
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 AAACAGTCGATTCCGGTGGAAGCCGCCGTCGTCTCCACCATGAGCGGTGTACAAGGAGCT 297
Query 294 TTCATTGGTGGTCTCATGGGAACACTCTCTCCTGAAATGCCTCAAGCCGGCGTTGACCCT 353
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTATTGGTGGTCTCATGGGAACACTCTCTCCTGAAATGCCTCAAGCCGGCGTTGACCCT 357
Query 354 CAAGCCATAGCTTCGATGAAACAAGCTCAGGCTCTTGTGGGTGGTCCTTGGGTCCAAGCT 413
||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 CAAGCTATAGCCTCGCTGAAACAAGCTCAGGCTCTTGTTGGTGGTCCTTGGGTCCAAGCT 417
Query 414 CGGAATTTTGCTGCAATTACTGGTGTGAATGCTGGAATTGCTTCTGTTATGAAGCGGATT 473
|||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 418 CGGAATTTTGCTGCCATTACCGGTGTTAATGCTGGAATTGCTTCAGTAATGAAGCGGATT 477
Query 474 AGAGGCAAAGAGGATATTGAATCTGCAGTGGTGGCAGCGTTAGGATCTGGATTTGCATAC 533
|||||||||| |||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 478 CGAGGCAAAGAAGATATTGAGTCTGCAGTGGTGGCTGCATTAGGATCTGGATTTGCATAC 537
Query 534 TCATTGGTGAGCCAAGGATTGCAAGGACAACCTATGAATGCAATCACTACTGCTGCTGGT 593
|| |||||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 538 TCTTTGGTGAGCCAAGGATTGCAAGGACAACCTATGAATGCTATTACCACTGCGGCGGGA 597
Query 594 TTTGCTGTTTTTCAAGGAGTGTTTTTTAAATTGGGAGAAAGATTCTCTAAACCGAGTACT 653
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 598 TTTGCTGTTTTTCAAGGAGTGTTTTTTAAGTTGGGAGAAAGGTTCTCTAAACCGAGCACT 657
Query 654 GAAGATCCATTTTTCACAAGAGGAAGGACAATGCTAGTGAAGCTAGGTTTGGAGAAATAC 713
|| ||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 GAGGATCCGTTTTACACACGAGGAAGGACAATGCTAGTGAAGCTAGGTTTAGAGAAATAC 717
Query 714 GAGAAGAACTTCAAGAAAGGACTTTTAACTGATCCCACATTGCCATTGCTCACTGATAGC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGAAGAACTTCAAGAAAGGACTTTTAACTGATCCCACATTGCCATTGCTCACTGATAGC 777
Query 774 GCGCTGAAAGATGCGAACATCCCACCAGGGCCAAGACTTATGATACTAGATCATATCCAG 833
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 GCGCTGAAAGATGCGAACATCCCACCAGGGCCAAGACTTATGATACTAGACCATATCCAG 837
Query 834 AGGGACCCGGAGATAAAGGGCAAACGAAAGTAGGAGCCATGTTGTTTA-AT-CAAATATG 891
||||||||||||||||||||||||||||||||| |||| ||||||||| || ||| | ||
Sbjct 838 AGGGACCCGGAGATAAAGGGCAAACGAAAGTAG-AGCCTTGTTGTTTATATGCAA-TCTG 895
Query 892 TTTTGATGGTAACGATCTTCAAACACATATGTAATGCCTTTTACTTTTAGCTGCTATTGC 951
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTTTGATGGTCACGATCTTCAAACACATATGTAATGCCTTTTACTTTTAGCTGCTATTGC 955
Query 952 C---ATGAAGAGCTCTTGTTAGATACTTCTGTTTCTATTACCAATGTTTGATTATCTTTa 1008
| | ||||| |||||||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 956 CTGCAGGAAGAACTCTTGTTAGATTCTTCTGTTTCTATTAGCAATGTTTGATTCTCTTTT 1015
Query 1009 aaaaaaT-TGAGTAGTTCGTCTCAAATCAAATTGGATTATAGGTTCTGAATAAAACGAAA 1067
|||| | ||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1016 AAAATTTATGAATATTTCGTCTCAAATCGAATTGGATTATAGGTTCTGAATAAAACGAAA 1075
Query 1068 ATGAAATATGCTTTGTATGAGAATAAGATGTTTATATTATGTATAG--TTGATTGGCTTA 1125
||| | |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1076 ATGGATTATGCTTTGTATGAGAATAAGATGATTATATTATGTGTAGAGTTGATTGGCTTA 1135
Query 1126 AGATCAAGACTCGATAAA 1143
||||||||| ||||||||
Sbjct 1136 AGATCAAGATTCGATAAA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5