BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49570.1

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485313 jgi|Araly1|485313|fgenesh2_kg.5__1305__AT3G49570.1         536    5e-152


> Ahg485313 jgi|Araly1|485313|fgenesh2_kg.5__1305__AT3G49570.1
Length=408

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 380/421 (90%), Gaps = 15/421 (4%)
 Strand=Plus/Plus

Query  71   TAATGGGAAAAGGAGGAGGTTATGTGACGGTGGCGGCggaagaagtggaggagttacgga  130
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    TAATGGGGAAAGGAGGAGGTTATGTGACGGTGGCGGCGGAAGAAGTGGAGGAGCTACGGA  60

Query  131  ggaggaacggagagttggagagagaaatggaggagatgaagaaagagaTGGTTCAGCTGT  190
            |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct  61   GGAGAAACGGAGAGTTGGAGAGAGAAATGGAGGTGATGAAGAAGGAGATGGTTCAGTTGT  120

Query  191  GGCGGCGTACGGTGGTGGCGGAGGAGGCCGAGGAGAGACTCTGCTCGCAACTGGCGGAGC  250
            |||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  121  GGCGGCGGGCGGTGGTGGCGGAAGAGGCGGAGGAGAGACTCTGCTCGCAACTGGCGGAGC  180

Query  251  TAGAGGTCGAGTCTTTAGATCAGGCGCGTGACTATCACTCTCGTATAGTCTTTCTCATGG  310
            | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTGAGGTCGAATCTCTAGATCAGGCGCGTGACTATCACTCTCGTATAGTCTTTCTCATGG  240

Query  311  ACCAAAtctctcgtctctcttcttcctctctTGAAGTCGTTGTTACGAATTCGTAGATAG  370
            ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct  241  ACCAAATCTCTCGTCTCTCTTCTTCCTCTCTTGAAGTCGTTGTAACAAATTCTTAGATAG  300

Query  371  ATTAATTATTATTTTGTCTTTAGCtttttttttttttttAATTGTGGGATCCAAGTAGTT  430
            |  |||| |||||||||||||||   |||||        | ||||| |||||||||||||
Sbjct  301  AA-AATTGTTATTTTGTCTTTAGAGCTTTTT--------A-TTGTGAGATCCAAGTAGTT  350

Query  431  TAATGTGTTAAAAAGATATGTAAAGAAATTTTGCATAA--GTATTACAAATTTTCATTTT  488
            |||||| | |||||||||||| || ||||| |||||||  | ||||||| ||||||||||
Sbjct  351  TAATGT-T-AAAAAGATATGTCAATAAATTCTGCATAAAAG-ATTACAATTTTTCATTTT  407

Query  489  C  489
            |
Sbjct  408  C  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17856815652


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5