BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49580.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485314 jgi|Araly1|485314|fgenesh2_kg.5__1306__AT3G49580.1         564    2e-160


> Ahg485314 jgi|Araly1|485314|fgenesh2_kg.5__1306__AT3G49580.1
Length=423

 Score =  564 bits (305),  Expect = 2e-160
 Identities = 395/436 (91%), Gaps = 15/436 (3%)
 Strand=Plus/Plus

Query  63   TTAATGGCGAACCGAGGAGGATGCGTGACGGTGGCGGCGGAAGAGATGGATGAGCTAAGG  122
            |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct  1    TTAATGGCGAACCGAGGAGGGTACGTGACGGTGGCGGCGGAAGAGATGGAGGAGCTAAGG  60

Query  123  AGGAGGAACATAGAGCTCTCGAGAGAAGTGGCGGAGATGAAGACAGAAATGATTAAGTTG  182
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   AGGAGGAACATAGAGCTCTCGAGAGAAGTGGAGGAGATGAAGACAGAAATGATTAAGTTG  120

Query  183  TGGCAGCGAACGGTTGTGGCGGAGGAGGCGGAAGAGCAACTCTGCTCGCAGCTGGCGGAG  242
            ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct  121  TGGCAACGAACGGTGGTGGCAGAGGAGGCGGAAGAGCGACTCTGCTCGCAGCTAGCGGAG  180

Query  243  CTGGAGGTCGAGTCTTTAGAACAGGCACGTGACTATCACGATCGCATGCTCTTCCTCATG  302
            |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  181  CTGGAGGTCGAGTCTTTAGATCAGGCACGTGACTATCACAATCGCATGCTCTTCCTCATG  240

Query  303  GATCAAAtctctcgtctctcttcttcttctgtcgtctcttcCTCGTAGAAT-AAGATATT  361
            |||||||||||||||||||||||||||||| ||| | |||| ||||||||| || |||| 
Sbjct  241  GATCAAATCTCTCGTCTCTCTTCTTCTTCTCTCGCCGCTTCGTCGTAGAATTAA-ATATA  299

Query  362  TCTCATAAGTTATGTATAGTTGTGTATGTGACAATCACTATACATGTA-TATAGATCGAT  420
            | |||||| |||||||||||||||||||||  |  || ||||| | |  ||||   | ||
Sbjct  300  TATCATAATTTATGTATAGTTGTGTATGTGT-A--CA-TATACGTTTGGTATA---C-AT  351

Query  421  GGTAATATGTTATGTTTTCAACATAAATTAAATGTTTGAATCCATTTCTAGTGAATAAAT  480
            | || |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| |
Sbjct  352  G-TA-TATGTTATGTTTTCAACATAAAGTATATGTT-GAATCAATTTCTAGTGAATAA-T  407

Query  481  TAGAATTTCTGATAAT  496
            ||| ||||||||||||
Sbjct  408  TAGTATTTCTGATAAT  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5