BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49590.3
Length=2440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485316 jgi|Araly1|485316|fgenesh2_kg.5__1308__AT3G49590.1 2058 0.0
> Ahg485316 jgi|Araly1|485316|fgenesh2_kg.5__1308__AT3G49590.1
Length=2213
Score = 2058 bits (1114), Expect = 0.0
Identities = 1276/1354 (94%), Gaps = 11/1354 (1%)
Strand=Plus/Plus
Query 370 GATATTTTTAGAATTGTTTCGA-TTTAGGGATTTGTGTGAAGAA-GATGGATTTTCCAGA 427
||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 200 GATATTTTTAGCATTGTTTCGATTTTAGGGATTTGTGTGAAGAACAATGGATTTTCCAGA 259
Query 428 GAATTTGCCTTCAGATATAGGAAGATTAGAGCAGATTGTTTCTCATTTCTTCCCAAAAGC 487
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GAATTTGCCATCAGATATAGGAAGATTAGAGCAGATTGTTTCTCATTTCTTCCCAAAAGC 319
Query 488 ATTACACATAGTTCTTAATTCCAGAATCCCTTCGTTGCAATCTCGTGGTCGTACTCGTGA 547
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 320 ATTACACATAGTTCTTAATTCCAGAATCCCTTCGTTGCAATCTCGTGCTCGTAGTCGTGA 379
Query 548 GCGTTTATCA---GGTCTTAACGTTAGAAAAAGTGACAAATGGTTTAATCTTGTGATGGG 604
|||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 380 GCGTTTATCATCAGGTCTTAATGTTAGAAAAAGCGATAAATGGTTTAATCTTGTGATGGG 439
Query 605 AGATCGTCCTGCTGCGTTGGAGAAATTGCATTCTTGGCATAGGAATATTCTGGATTCTAT 664
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 440 AGATCGTCCTCCTGCGTTGGAGAAATTGCATTCTTGGCACAGGAATATTTTGGATTCTAT 499
Query 665 GATTATTGATATCATTCTTGTCCATCCGATTTCAAACGATAATTTGGATGATGATGATGA 724
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 500 GATTATTGATATCATTCTTGTTCATCCGATTTCAACCGATAATTTGGATGTTGATGATGA 559
Query 725 TCAT-A-G-TGATTCTGTTGTTAGATCAGCTGAGACTGTGATTGAGCGTTGGGTTGTTCA 781
|||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TCATCATGGTGATTCTACTGTTAGATCAGCTGAGACTGTGATTGAGCGTTGGGTTGTTCA 619
Query 782 ATATGAGAATCCTTTGATTATGTCTCCTCAGAGTTCTGACTCTGCAACGCGTTACCAGAA 841
|||||||||||||||||||||||||||| ||||||||| ||||| || ||||| |||||
Sbjct 620 GTATGAGAATCCTTTGATTATGTCTCCTCTGAGTTCTGAGTCTGCTACCCGTTATCAGAA 679
Query 842 GGTTTACAAGAAATCTATCATTCTGTTGCGGTCTCTTTATGCACAGACTCGGCTTCTTCC 901
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 680 GGTTTACAAGAAATCTATCATTCTGTTGCGGTCTCTTTATGCGCAGACTCGGCTTCTTCC 739
Query 902 TGCTTATCGTGTCTCTAGGCAGCTGAGTTCTTCTCTTGCTTCTTCTGGTTATGATTTGAT 961
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 740 TGCTTATCGTGTTTCTAGGCAGCTGAGTTCGTCTCTTGCTTCTTCTGGTTATGATTTGAT 799
Query 962 TTACAAGGTTTCATCTTTCAGTGACATATTCTCTGGTCCTGTGACGGAAACAATGAAAGA 1021
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 800 CTACAAGATTTCATCTTTCAGTGATATATTCTCTGGTCCTGTGACGGAAACAATGAAAGA 859
Query 1022 GTTTCGTTTTGCTCCTGTTGAAGTGCCTCCTGGTCGTCTTTGTGCATCGGTTACTTACCG 1081
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 860 GTTTCGTTTTGCTCCAGTTAAAGTACCTCCTGGTCGTCTTTGTGCATCGGTTACTTACCG 919
Query 1082 TTCTGACTTATCTGATTTTAATCTCGGTGCTCATATCACATTGCCTCCGAGGATTATAAC 1141
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 920 TTCTGACTTATCTGATTTCAATCTCGGTGCTCATATCACATTGCCTCCGAGAATCATCAC 979
Query 1142 TGATTATGTGGGAAGTCCTGCAACAGATCCTATGAGGTTTTTCCCTTCTCCAGGGAGAAG 1201
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 980 TGATTATGTAGGAAGTCCTGCAACTGATCCTATGAGGTTTTTCCCTTCTCCAGGGAAAAG 1039
Query 1202 TGTTGAAGGCCATTCCTTTACTGGTAGAGCTGGTCGGCCTCCATTGACTGGTTCATCTGC 1261
| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TATTGAAGGAAATTCCTTTATTGGTAGAGCTGGTCGGCCTCCATTGACTGGTTCATCTGC 1099
Query 1262 AGAACGTCCGCATAGCTGGACTAGCGGCTTTCACAGACCTCCAGCTCAATTCGCAACACC 1321
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1100 TGAACGTCCGCATAGCTGGACTAGCGGCTTTCACAGACCTCCAGCTCAGTACCCAACACC 1159
Query 1322 GAACCAATCTTTTTCGCCAGCTCAGTCTCATCAGTTGTCACCTGGGTTACACGATTTCCA 1381
|||||||||||||| || ||||| || ||||| || ||||| |||||||| ||||||||
Sbjct 1160 TAACCAATCTTTTTCTCCTGCTCATTCCCATCAATTTTCACCCGGGTTACATGATTTCCA 1219
Query 1382 CTGGTCACGTACAGATGCTTTTGGTGACAATCACCAGCTTTCACCTCCCTTTTCACCATC 1441
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1220 CTGGTCACGTACAGATGCATTTGGTGACAATCACCAGCTTTCACCTCCTTTTTCGCCATC 1279
Query 1442 GGGTTCTCCATCTACTCCAAGATACATATCTGGGGGTAACAGTCCGCGCATTAATGTGAG 1501
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GGGTTCTCCGTCTACTCCAAGATACATATCTGGGGGTAACAGTCCGCGCATTAATGTGAG 1339
Query 1502 ACCAGGGACTGCTCCAGTGACCATTCCTTCTTCAGCCACGTTAAATAGATACGTTTCATC 1561
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1340 ACCAGGGACTGCTCCAGTGACCATTCCTTCGTCAGCCACATTCAATAGATACGTTTCATC 1399
Query 1562 TAACTTCTCTGAGCCAGGTAGGAATCCACTTCCTCCTTTTTCCCCCAAAAGCACAAGACG 1621
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1400 TAATTTCTCTGAGCCAGGTAGGAATCCACTTCCTCCTTTTTCCCCGAAAAGCGCAAGACG 1459
Query 1622 CTCCCCTTCATCGCAGGACTCTTTGCCTGGGATTGCGTTGTACAGGAGTTCTAGAAGCGG 1681
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1460 GTCCCCTTCATCGCAGGACTCTTTGCCTGGGATTGCATTGTACAGGAGTTCTAGAAGCGG 1519
Query 1682 AGAGTCTCCTTCTGGATTAATGAACCAGTACCCT 1715
|||||||||| |||||||||||||||||||||
Sbjct 1520 AGAGTCTCCT---GGATTAATGAACCAGTACCCT 1550
Score = 1037 bits (561), Expect = 0.0
Identities = 614/640 (96%), Gaps = 1/640 (0%)
Strand=Plus/Plus
Query 1784 CAAATACGATTCAGGCCGCTTCTCAGGAGTTCTGTCTTCGAGTGACTCACCAAGATTCGC 1843
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 CAAATACGATTCAGGCCGCTTCTCAGGAGTTCTGTCTTCGAGTGACTCACCAAGATTCGG 1633
Query 1844 GTTTTCTAGGAGCCCCAGTAGATTATCTTCCCAAGACGACTTGGATGACCCTGATTGTTC 1903
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1634 GTTTTCTAGGAGCCCCAGTAGATTATCTTCTCAAGACGACTTGGATGACCCTGATTGTTC 1693
Query 1904 ATGCCCTTTTGATTTCGATGATGTTGATGAGTCAGGACTTCAGTACAGCCATAGTCTTGA 1963
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1694 ATGCCCTTTTGATTTCGATGATGTTGACGAGTCAGGACTTCAGTACAGCCAAAGTCTTGA 1753
Query 1964 CCGGAGGAAAACTTCAAGCTCTATATCGCAGTCGCTACCTCTAGGGAGAAGATCATCACA 2023
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1754 CCGGAGGAAAACTTCAAGCTCTATATCACAGTCGCTACCTCTAGGGAGAAGGTCATCACA 1813
Query 2024 GGACGCAGCGGTTGGTGTTCTGGTTCACATGCTGAAGACAGCACCACCATTACGACAAGA 2083
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1814 GGACGCAGCGGTTGGTGTTCTGGTTCACATGCTGAAGACAGCACCGCCATTACGACAAGA 1873
Query 2084 CTCAAGCACTTATATGGCGTCAATGTCTGGGGTTCAGAGAGAAGGTTCAGTGTCAGGTAC 2143
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 CTCAAGCACTTACATGGCGTCAATGTCTGGGGTTCAGAGAGAAGGTTCAGTGTCAGGTAC 1933
Query 2144 AGAATCTGAATTTTCGATGGCTCGTAGCACATCAGATGCACTAGAGGAACTGAGAAACTA 2203
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1934 AGAATCTGAATTTTCGATGGCTCGTAGCACATCAGATGCACTAGAGGAGCTGAGAAACTA 1993
Query 2204 CAAACAGCTCAAAGACTTGCTTCTCTCCAAATCCAAAAGTGGGTCTGGACCAACTCGCGT 2263
|||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 1994 CAAACAGCTCAAAGACTTACTTCTTTCCAAATCCAAAAGTGGGTCTGGAGCAACTCGTGT 2053
Query 2264 CCACTGAGCCAAATCAAAGAGCGATCAAGATATGAGTTATCCGATGGTTGTTTGTAGATA 2323
|||||||||||||||||||||| | |||||||||||||||| ||||| |||||||| |||
Sbjct 2054 CCACTGAGCCAAATCAAAGAGCAAGCAAGATATGAGTTATCGGATGGATGTTTGTATATA 2113
Query 2324 TGAATTTGATGACGAATACTTAACTCTGTTGTATAT-TGCCAAAGAGCAATCACGTTTTG 2382
|| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2114 TGGATTTGATGACGAGTACTTAACTCTGTTGTATAAATGCCAAAGAGCAATCACGTTTCA 2173
Query 2383 GTTTCTGTAAAAGAACTTGCCTTTGAATATGCACATAAAA 2422
|||||||||||||||||||||| ||||| |||||||||||
Sbjct 2174 GTTTCTGTAAAAGAACTTGCCTCTGAATTTGCACATAAAA 2213
Score = 119 bits (64), Expect = 1e-25
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 82 AAACTCTTTTTGTTTA-TGTTGATCATCATCATCGTCATCTGCGTGTAAAACACACTCAC 140
||||||||||| |||| | || |||| |||||| |||||||||||||||||||| ||||
Sbjct 1 AAACTCTTTTTATTTATTAATGTTCATGATCATCATCATCTGCGTGTAAAACACAATCAC 60
Query 141 GCCATCGTTGACGTCTCAGATCTTCACATAAA 172
|||||||||||||||||||||||||| |||||
Sbjct 61 GCCATCGTTGACGTCTCAGATCTTCAAATAAA 92
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91949851430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5