BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49601.1

Length=2100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944521 jgi|Araly1|944521|scaffold_700750.1                        231    1e-59
  Ahg923506 jgi|Araly1|923506|scaffold_104787.1                        231    1e-59


> Ahg944521 jgi|Araly1|944521|scaffold_700750.1
Length=198

 Score =  231 bits (125),  Expect = 1e-59
 Identities = 144/153 (94%), Gaps = 2/153 (1%)
 Strand=Plus/Plus

Query  110  TTAGAGTTGAAAGATGTACAACGGAATAGGGTTACAGACAGCAAGAGGATCAGGAACTAA  169
            |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct  13   TTAGAGTTGAAAGATGTACAACGGGATAGGGTTACAGACCGCAAGAGGATCAGGAACTAA  72

Query  170  TGGTTATGTTCAGACGAATAAGTTTTTTGTGAGACCTAGAAATGGTGGTAAGCCTGTTAA  229
            |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  73   TGGTTATGTTGAGACGAATAAGTTCTTTGTGAGACCTAGAAATGGTGGTAAGCCTGTTAA  132

Query  230  AGGTGGGAAA-GGTTTTGAGGATGATGAAGGTA  261
             ||||| ||| ||||| ||||||||| ||||||
Sbjct  133  TGGTGGTAAATGGTTT-GAGGATGATCAAGGTA  164


> Ahg923506 jgi|Araly1|923506|scaffold_104787.1
Length=198

 Score =  231 bits (125),  Expect = 1e-59
 Identities = 144/153 (94%), Gaps = 2/153 (1%)
 Strand=Plus/Plus

Query  110  TTAGAGTTGAAAGATGTACAACGGAATAGGGTTACAGACAGCAAGAGGATCAGGAACTAA  169
            |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct  13   TTAGAGTTGAAAGATGTACAACGGGATAGGGTTACAGACCGCAAGAGGATCAGGAACTAA  72

Query  170  TGGTTATGTTCAGACGAATAAGTTTTTTGTGAGACCTAGAAATGGTGGTAAGCCTGTTAA  229
            |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  73   TGGTTATGTTGAGACGAATAAGTTCTTTGTGAGACCTAGAAATGGTGGTAAGCCTGTTAA  132

Query  230  AGGTGGGAAA-GGTTTTGAGGATGATGAAGGTA  261
             ||||| ||| ||||| ||||||||| ||||||
Sbjct  133  TGGTGGTAAATGGTTT-GAGGATGATCAAGGTA  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 78999168130


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5