BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49610.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937768 jgi|Araly1|937768|scaffold_501959.1 990 0.0
Ahg331317 jgi|Araly1|331317|fgenesh1_pm.C_scaffold_8000660 769 0.0
> Ahg937768 jgi|Araly1|937768|scaffold_501959.1
Length=992
Score = 990 bits (536), Expect = 0.0
Identities = 849/992 (86%), Gaps = 53/992 (5%)
Strand=Plus/Plus
Query 36 GGGGA-AGGATATGTGGTCACGTTTAAGTGATTTGGCGGATAAAGCTGATATGCTATATg 94
||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 12 GGGGATA-GATATGTGGTCGCGTTTTCGTGATTTGGCGGATAAAGCTGATATGCTATATG 70
Query 95 aaagagaaggaatatccaaagaccgcaagagtgtctcagaagaagaagaagaaaagaaga 154
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 71 AAAGAGAAGGAGTATCCAAAGACCGCAAGAGTGTCTC---AGAAGAAGAAG---AGAAGA 124
Query 155 CGAGATTCAGTATTTTGGTGGATCT-CGTGGGTAGGTTATGTGATCAAGAGGAACGTCGT 213
|||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||
Sbjct 125 CGAGGTTCAGTATTTTGGTGGAT-TACGTGGGTATGTTATGTGATGAAGAAGAACGTCGT 183
Query 214 ACTCTTGGATCATCTCCTACAAAAACCAACACTCTTTTTGAGGGTAGTGAAAAGAGCCAC 273
| ||||||||||||||| ||| ||||||| ||||| ||||| | ||| || ||||| |
Sbjct 184 ATTCTTGGATCATCTCCCACAGAAACCAAGACTCTCTTTGATGATAGCGAGAAGAG---C 240
Query 274 TTGGATCATCACTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTGttttttt 333
| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ------C-T--CTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTATTTTTTT 291
Query 334 ACTAGAGTATACACGCGACGAAACCAT-AA----T-AAC-G--TTTCTACTTCTTCATCG 384
|| ||||||||||| ||||||||| || || | || | ||||| |||||||||||
Sbjct 292 ACCAGAGTATACACACGACGAAACAATGAAACACTTAATAGAGTTTCTGCTTCTTCATCG 351
Query 385 CTCTTCAACACGGATGAGTTTGAGAGGACGGAGACTAAAAGCCCTACAATCCGTAATTCC 444
||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 352 CTCTTCAACACGGCTGAGTTTGAGAGGACGGAGACTAAAAGCCCTCCAAACCCTAATTTG 411
Query 445 CAATCTTCACCGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCA-AA--G- 500
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 412 CAATCTTCCCCGTCTTCGTGTGTAATGGAGAACACAAAACGCAAGAGGTATCAGAAAAGG 471
Query 501 --TAGTGGTAAATCCAAGAAACCAAAGTTTGATCCTTTCTCACTGACTGCGGCGAGAGAG 558
||||||||||||||||||| ||||| |||||||||| |||| ||| || ||||| |
Sbjct 472 AGTAGTGGTAAATCCAAGAAAGCAAAGGTTGATCCTTTATCACAGACAGCTA-GAGAG-G 529
Query 559 ACGCCAGAGTGGCTTTTAGATGTGATGAGAAAGATGAAGGGAGCCGAAGGAC-CGATCAA 617
|||||||||||||||| ||| |||||||||||||||| | ||| ||||| | || | |
Sbjct 530 -CGCCAGAGTGGCTTTTCGATATGATGAGAAAGATGAAAGAAGCTGAAGG-CTCGGTTAG 587
Query 618 ACTGATCTACGAG-AAGACTTTGACCGCAACTGACGTCAAGCCAAGCGAGAGTCGTCTCT 676
|||||||| || |||||||||||||| | |||||||||||||||| |||| |||||||
Sbjct 588 GCTGATCTAT-AGGAAGACTTTGACCGCGAGTGACGTCAAGCCAAGCCAGAGCCGTCTCT 646
Query 677 TAATACCTTTCAATAAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCGAGCCA 736
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 647 TAATACCTTTCAGTCAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCAAGCCA 706
Query 737 TAGCCATAGATAaagaagaagaagaaga-agaCACCAAGAAAATTGGTGTGAAAACGATT 795
||| ||||||||||||||||||||| || | ||| ||| || |||||| ||| |||||||
Sbjct 707 TAGGCATAGATAAAGAAGAAGAAGACGACA-ACAACAATAATATTGGTATGAGAACGATT 765
Query 796 ATCGTGAATCAATTCTCTAAAGAATGGAG-TTTACGTTTTCTGATATGGGTGATGAAGAA 854
||||| ||||||| |||||||| ||| | |||||||||| |||||| |||||||||||
Sbjct 766 GTCGTGGATCAATTATCTAAAGAGTGG-GCTTTACGTTTTAAGATATGTGTGATGAAGAA 824
Query 855 GAAAAAATCTGGAAATGGAACCTTGTACTACACTTTGAATCGGGGGTGGAATGGTGTCGT 914
|||| |||||||| |||||||| ||||| ||||||||||||||||||| |||||
Sbjct 825 GAAA---TCTGGAAAAAGAACCTTGAACTACGCTTTGAATCGGGGGTGGAACAACGTCGT 881
Query 915 CTCG-GGTAACAAGCTCAAAGCCAACGACAATATTAGTCTTTGGACTTTCAGGTGTGGTG 973
| | |||||||| | |||| || |||| ||||||||||||||||||||||||||||
Sbjct 882 CA-GTGGTAACAAATTGAAAGAGAAAGACACGATTAGTCTTTGGACTTTCAGGTGTGGTG 940
Query 974 GAGTCCTCTGTTTTGCCCTTGAGAAAGAGTAG 1005
|| || ||| |||||||||||||||||||||
Sbjct 941 AAGACCGCTGCTTTGCCCTTGAGAAAGAGTAG 972
> Ahg331317 jgi|Araly1|331317|fgenesh1_pm.C_scaffold_8000660
Length=879
Score = 769 bits (416), Expect = 0.0
Identities = 639/742 (86%), Gaps = 33/742 (4%)
Strand=Plus/Plus
Query 285 CTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTGtttttttACTAGAGTAT- 343
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 150 CTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTATTTTTTTACCAGAGTATA 209
Query 344 -ACACG-CG--AC---GAAAC-CATAATA-ACGTTTCTACTTCTTCATCGCTCTTCAACA 394
||||| || || ||||| | ||||| | |||||| |||||||||||||||||||||
Sbjct 210 CACACGACGAAACAATGAAACACTTAATAGA-GTTTCTGCTTCTTCATCGCTCTTCAACA 268
Query 395 CGGATGAGTTTGAGAGGACGGAGACTAAAAGCCCTACAATCCGTAATTCCCAATCTTCAC 454
||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||| |
Sbjct 269 CGGCTGAGTTTGAGAGGACGGAGACTAAAAGCCCTCCAAACCCTAATTTGCAATCTTCCC 328
Query 455 CGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCA-AA--G---TAGTGGTA 508
||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 329 CGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCAGAAAAGGAGTAGTGGTA 388
Query 509 AATCCAAGAAACCAAAGTTTGATCCTTTCTCACTGACTGCGGCGAGAGAGACGCCAGAGT 568
||||||||||| ||||| |||||||||| |||| ||| || ||||| | |||||||||
Sbjct 389 AATCCAAGAAAGCAAAGGTTGATCCTTTATCACAGACAGCTA-GAGAG-G-CGCCAGAGT 445
Query 569 GGCTTTTAGATGTGATGAGAAAGATGAAGGGAGCCGAAGGAC-CGATCAAACTGATCTAC 627
||||||| ||| |||||||||||||||| | ||| ||||| | || | | ||||||||
Sbjct 446 GGCTTTTCGATATGATGAGAAAGATGAAAGAAGCTGAAGG-CTCGGTTAGGCTGATCTAT 504
Query 628 GAG-AAGACTTTGACCGCAACTGACGTCAAGCCAAGCGAGAGTCGTCTCTTAATACCTTT 686
|| |||||||||||||| | |||||||||||||||| |||| |||||||||||||||||
Sbjct 505 -AGGAAGACTTTGACCGCGAGTGACGTCAAGCCAAGCCAGAGCCGTCTCTTAATACCTTT 563
Query 687 CAATAAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCGAGCCATAGCCATAGA 746
|| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 564 CAGTCAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCAAGCCATAGGCATAGA 623
Query 747 TAaagaagaagaagaaga-agaCACCAAGAAAATTGGTGTGAAAACGATTATCGTGAATC 805
||||||||||||||| || | ||| ||| || |||||| ||| ||||||| ||||| |||
Sbjct 624 TAAAGAAGAAGAAGACGACA-ACAACAATAATATTGGTATGAGAACGATTGTCGTGGATC 682
Query 806 AATTCTCTAAAGAATGGAG-TTTACGTTTTCTGATATGGGTGATGAAGAAGAAAAAATCT 864
|||| |||||||| ||| | |||||||||| |||||| ||||||||||||||| |||
Sbjct 683 AATTATCTAAAGAGTGG-GCTTTACGTTTTAAGATATGTGTGATGAAGAAGAAA---TCT 738
Query 865 GGAAATGGAACCTTGTACTACACTTTGAATCGGGGGTGGAATGGTGTCGTCTCG-GGTAA 923
||||| |||||||| ||||| ||||||||||||||||||| |||||| | |||||
Sbjct 739 GGAAAAAGAACCTTGAACTACGCTTTGAATCGGGGGTGGAACAACGTCGTCA-GTGGTAA 797
Query 924 CAAGCTCAAAGCCAACGACAATATTAGTCTTTGGACTTTCAGGTGTGGTGGAGTCCTCTG 983
||| | |||| || |||| |||||||||||||||||||||||||||| || || |||
Sbjct 798 CAAATTGAAAGAGAAAGACACGATTAGTCTTTGGACTTTCAGGTGTGGTGAAGACCGCTG 857
Query 984 TTTTGCCCTTGAGAAAGAGTAG 1005
|||||||||||||||||||||
Sbjct 858 CTTTGCCCTTGAGAAAGAGTAG 879
Score = 159 bits (86), Expect = 3e-38
Identities = 97/102 (95%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 46 ATGTGGTCACGTTTAAGTGATTTGGCGGATAAAGCTGATATGCTATATgaaagagaagga 105
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGTCGCGTTTTCGTGATTTGGCGGATAAAGCTGATATGCTATATGAAAGAGAAGGA 60
Query 106 atatccaaagaccgcaagagtgtctcagaagaagaagaagaa 147
||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTATCCAAAGACCGCAAGAGTGTCTCAGAAGAAGAAGA-GAA 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5