BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49620.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494969 jgi|Araly1|494969|fgenesh2_kg.8__785__AT3G49620.1 1714 0.0
Ahg485319 jgi|Araly1|485319|fgenesh2_kg.5__1311__AT3G49620.1 1714 0.0
Ahg348065 jgi|Araly1|348065|fgenesh1_pg.C_scaffold_5001457 1009 0.0
Ahg485377 jgi|Araly1|485377|fgenesh2_kg.5__1369__AT3G50210.3 789 0.0
Ahg949369 jgi|Araly1|949369|scaffold_801256.1 158 1e-37
> Ahg494969 jgi|Araly1|494969|fgenesh2_kg.8__785__AT3G49620.1
Length=1187
Score = 1714 bits (928), Expect = 0.0
Identities = 1051/1111 (95%), Gaps = 5/1111 (0%)
Strand=Plus/Plus
Query 84 TATATCATCGCAAA-GTAGTCTTTACGTACGTAAGAGCAAAGCGTTTCTATCATTTCCTT 142
|||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 42 TATATCATCGCAAATTTCGTCTTTACGTACGTAAGAGCAAAGCGTTTCTGTCATTTCCTT 101
Query 143 AATATTGAAATGGTGA---CAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCT 199
|| | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CATGTCGAAATGGTGACTGCAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCT 161
Query 200 TTACTGGCCAAATGTGATGATTTCGACATGGCTGAGGATGCGGGGGTTGTGGAAGTAGTC 259
||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||
Sbjct 162 TTACTGGCCAAATGTGATGATTTCGACATGGCTAAGGATGCCGGGGTTGCGGAAGTTGTC 221
Query 260 GGAAAACTGGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGATTGGTCATGGAATA 319
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 222 AAAAAACTAGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGGTTGGTCATGGAATA 281
Query 320 TCGGATGATCTTATAAATAAGGTGAAAGAGATGACGCATCAGTTCTTCGAGCTTCCTTAC 379
||||||||||||||||| ||||||| |||| |||||||||| || ||||||||||||||
Sbjct 282 TCGGATGATCTTATAAAGAAGGTGAGAGAGGTGACGCATCAATTTTTCGAGCTTCCTTAT 341
Query 380 GAGGAGAAACTTAAGATCAAGATTACTCCAACTGCTGGATACAGAGGATACCAAAGAATT 439
|| ||||||||||||||||||||||||||| ||| ||| ||||||||||| || ||||||
Sbjct 342 GAAGAGAAACTTAAGATCAAGATTACTCCAGCTGGTGGTTACAGAGGATATCAGAGAATT 401
Query 440 GGAGTAAATTTTACGAGTGGGAAACAAGATATGCACGAAGCCATTGATTGTTACAGAGAG 499
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GGAGTAAATTTTACAAGTGGGAAACAAGATATGCACGAAGCCATTGATTGTTACAGAGAG 461
Query 500 TTCAAGCAAGGGAAACATGGGGACATCGGAAAGGTCTTGGAAGGGCCAAACCAGTGGCCA 559
||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 462 TTCAAGCAAGGGAGGTATGGGGACATTGGAAAGGTCTTGGAAGGGTCAAACCATTGGCCA 521
Query 560 GGAAATCCTCAAGAGTACAAAGATTTAATGGAGAAGTATATTAAGCTGTGCACAGATCTT 619
|| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||
Sbjct 522 GGGAATCCTCAAGAGTACAAAGATTTGATGGAGGAGTACATTAAGCTATGCACAGATCTT 581
Query 620 TCTAGAAATATCTTAAGGGGAATCTCATTAGCCCTTGGTGGATCACCTTATGAGTTTGAG 679
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 582 TCTAGAAATATCTTAAGGGGAATCTCCTTAGCCCTTGGTGGATCACCTTATGAGTTCGAG 641
Query 680 GGAAAGATGCTTAGAGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTGTAAAC 739
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GGAAAGATGCTTAGCGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTGTAAAC 701
Query 740 CAAGAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGCTTGTTGACGCTTATAAAT 799
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 702 CAAGAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGCTTGTTGACACTTATAAAT 761
Query 800 CAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGACGGTGATTGGATACCAGCT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGACGGTGATTGGATACCAGCT 821
Query 860 ATTCCGATCCCTGGATCATTTATCTGCAACATCGGTGACATGTTAACGATACTATCAAAC 919
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ATTCCGATCCCTGGATCGTTTATCTGCAACATCGGTGACATGTTAACGATACTATCAAAC 881
Query 920 GGAGTTTACCAATCCACACTACATAAAGTAATCAATAACTCTCCTAAATACCGTGTATGT 979
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 882 GGAGTTTACCAATCCACACTACATAAAGTAATCAACAACTCTCCTAAATACCGTGTTTGT 941
Query 980 GTTGCATTTTTCTACGAGACTAACTTCGAGGCGGAGGTAGAGCCACTTGATATCTTTAAA 1039
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 942 GTTGCATTCTTCTACGAGACTAACTTCGAGGCGGAGGTGGAGCCACTGGATATCTTCAAA 1001
Query 1040 GAGAAGCATCCACGAAAAGAAACATCTCAAGTTGCCAAAAGAGTCGTCTATGGACAGCAT 1099
|||||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1002 GAGAAGTACCCAAGAAAAGAAACATCTCAAGTTGCCAAAAGAGTTGTCTATGGACAGCAT 1061
Query 1100 CTGATTAACAAAGTCCTGACAACCTTTGCAAATTTAGTGGAAAACAGTTAATATGGTTGA 1159
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTGATTAACAAAGTCCTGACTACCTTTGCAAATTTAGTGGAAAACAGTTAATATGGTTGG 1121
Query 1160 T-GGGCTTTGGATGGTAATTGTTTTACCTAA 1189
| |||||||||||||||||||||||||||||
Sbjct 1122 TTGGGCTTTGGATGGTAATTGTTTTACCTAA 1152
> Ahg485319 jgi|Araly1|485319|fgenesh2_kg.5__1311__AT3G49620.1
Length=1149
Score = 1714 bits (928), Expect = 0.0
Identities = 1049/1108 (95%), Gaps = 5/1108 (0%)
Strand=Plus/Plus
Query 84 TATATCATCGCAAA-GTAGTCTTTACGTACGTAAGAGCAAAGCGTTTCTATCATTTCCTT 142
|||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 42 TATATCATCGCAAATTTCGTCTTTACGTACGTAAGAGCAAAGCGTTTCTGTCATTTCCTT 101
Query 143 AATATTGAAATGGTGA---CAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCT 199
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CATATCGAAATGGTGACTGCAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCT 161
Query 200 TTACTGGCCAAATGTGATGATTTCGACATGGCTGAGGATGCGGGGGTTGTGGAAGTAGTC 259
||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||
Sbjct 162 TTACTGGCCAAATGTGATGATTTCGACATGGCTAAGGATGCCGGGGTTGCGGAAGTTGTC 221
Query 260 GGAAAACTGGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGATTGGTCATGGAATA 319
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 222 AAAAAACTAGACAGGGCATGTCGGGACGTCGGATTCTTCTACGTGGTTGGTCATGGAATA 281
Query 320 TCGGATGATCTTATAAATAAGGTGAAAGAGATGACGCATCAGTTCTTCGAGCTTCCTTAC 379
||||||||||||||||| ||||||| |||| |||||||||| || ||||||||||||||
Sbjct 282 TCGGATGATCTTATAAAGAAGGTGAGAGAGGTGACGCATCAATTTTTCGAGCTTCCTTAT 341
Query 380 GAGGAGAAACTTAAGATCAAGATTACTCCAACTGCTGGATACAGAGGATACCAAAGAATT 439
|| ||||||||||||||||||||||||||| ||| ||| ||||||||||| || ||||||
Sbjct 342 GAAGAGAAACTTAAGATCAAGATTACTCCAGCTGGTGGTTACAGAGGATATCAGAGAATT 401
Query 440 GGAGTAAATTTTACGAGTGGGAAACAAGATATGCACGAAGCCATTGATTGTTACAGAGAG 499
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GGAGTAAATTTTACAAGTGGGAAACAAGATATGCACGAAGCCATTGATTGTTACAGAGAG 461
Query 500 TTCAAGCAAGGGAAACATGGGGACATCGGAAAGGTCTTGGAAGGGCCAAACCAGTGGCCA 559
||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 462 TTCAAGCAAGGGAGGTATGGGGACATTGGAAAGGTCTTGGAAGGGTCAAACCATTGGCCA 521
Query 560 GGAAATCCTCAAGAGTACAAAGATTTAATGGAGAAGTATATTAAGCTGTGCACAGATCTT 619
|| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||
Sbjct 522 GGGAATCCTCAAGAGTACAAAGATTTGATGGAGGAGTACATTAAGCTATGCACAGATCTT 581
Query 620 TCTAGAAATATCTTAAGGGGAATCTCATTAGCCCTTGGTGGATCACCTTATGAGTTTGAG 679
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 582 TCTAGAAATATCTTAAGGGGAATCTCCTTAGCCCTTGGTGGATCACCTTATGAGTTCGAG 641
Query 680 GGAAAGATGCTTAGAGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTGTAAAC 739
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GGAAAGATGCTTAGCGACCCTTTTTGGGTAATGCGTATCATTGGTTATCCAGGTGTAAAC 701
Query 740 CAAGAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGCTTGTTGACGCTTATAAAT 799
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 702 CAAGAAAATGTTATTGGATGTGGAGCTCACACTGACTATGGCTTGTTGACACTTATAAAT 761
Query 800 CAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGACGGTGATTGGATACCAGCT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CAAGATGATGATAAAACTGCTCTTCAGGTGAAAAACGTGGACGGTGATTGGATACCAGCT 821
Query 860 ATTCCGATCCCTGGATCATTTATCTGCAACATCGGTGACATGTTAACGATACTATCAAAC 919
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ATTCCGATCCCTGGATCGTTTATCTGCAACATCGGTGACATGTTAACGATACTATCAAAC 881
Query 920 GGAGTTTACCAATCCACACTACATAAAGTAATCAATAACTCTCCTAAATACCGTGTATGT 979
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 882 GGAGTTTACCAATCCACACTACATAAAGTAATCAACAACTCTCCTAAATACCGTGTTTGT 941
Query 980 GTTGCATTTTTCTACGAGACTAACTTCGAGGCGGAGGTAGAGCCACTTGATATCTTTAAA 1039
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 942 GTTGCATTCTTCTACGAGACTAACTTCGAGGCGGAGGTGGAGCCACTGGATATCTTCAAA 1001
Query 1040 GAGAAGCATCCACGAAAAGAAACATCTCAAGTTGCCAAAAGAGTCGTCTATGGACAGCAT 1099
|||||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1002 GAGAAGTACCCAAGAAAAGAAACATCTCAAGTTGCCAAAAGAGTTGTCTATGGACAGCAT 1061
Query 1100 CTGATTAACAAAGTCCTGACAACCTTTGCAAATTTAGTGGAAAACAGTTAATATGGTTGA 1159
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTGATTAACAAAGTCCTGACTACCTTTGCAAATTTAGTGGAAAACAGTTAATATGGTTGG 1121
Query 1160 T-GGGCTTTGGATGGTAATTGTTTTACC 1186
| ||||||||||||||||||||||||||
Sbjct 1122 TTGGGCTTTGGATGGTAATTGTTTTACC 1149
> Ahg348065 jgi|Araly1|348065|fgenesh1_pg.C_scaffold_5001457
Length=1035
Score = 1009 bits (546), Expect = 0.0
Identities = 757/858 (88%), Gaps = 17/858 (2%)
Strand=Plus/Plus
Query 304 GATTGGTCATGGAATATCGGATGATCTTATAAATAAGGTGA-A-AGAGATGACGCATCAG 361
||||||||||||||||||||| ||||||||||| ||||||| | || ||| || ||||
Sbjct 184 GATTGGTCATGGAATATCGGAGGATCTTATAAAGAAGGTGAGAGTGATATGTCGAATCAA 243
Query 362 TTCTTCGAGCTTCCTTACGAGGAGAAACTTAAGATCAAGATTACTCCAACTGCTGGATAC 421
||||| ||||||||||| || |||||||||||||||||||||| ||| |||||||||||
Sbjct 244 TTCTTTGAGCTTCCTTATGAAGAGAAACTTAAGATCAAGATTAGGCCAGCTGCTGGATAC 303
Query 422 AGAGGATACCAAAGAATTGGAGTAAATTTTACGAGTGGGAAACAAGATATGCACGAAGCC 481
|||||||| || ||||| ||| |||| || ||||||||||||||||| ||||||||||||
Sbjct 304 AGAGGATATCAGAGAATGGGACTAAACTTAACGAGTGGGAAACAAGACATGCACGAAGCC 363
Query 482 ATTGATTGTTACAGAGAGTTCAA-GCAAGGGAAACATGGGGACATCGGAAAGGTCTTGGA 540
||||||||||||| |||||| || | |||||| |||||||| | |||||||| |||||
Sbjct 364 ATTGATTGTTACAAAGAGTTTAATG-AAGGGACGTATGGGGACCTTGGAAAGGTTTTGGA 422
Query 541 AGGGCCAAACCAGTGGCCAGGA-AATCCTCAAGAGTACAAAGATTTAATGGAGAAGTATA 599
||||||||||||||||||| || |||||||||||||||||||| || |||||| ||||||
Sbjct 423 AGGGCCAAACCAGTGGCCA-GAGAATCCTCAAGAGTACAAAGAGTTGATGGAGGAGTATA 481
Query 600 TTAAGCTGTGCACAGATCTTTCTAGAAATATCTTAAGGGGAATCTCATTAGCCCTTGGTG 659
||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 482 TTAAGCTCTGCATAGATCTTTCTAGAAATATCTTAAGGGGAATCTCCTTAGCCCTTGGTG 541
Query 660 GATCACCTTATGAGTTTGAGGGAAAGATGCTT--AGA-GACCCTTTTTGGGTAATGCGTA 716
||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct 542 GATCACCTTATGAATTTGAGGGAAAGATGCTTAGAGACGACCCTTTTTGGATAATGCGTA 601
Query 717 -TCATTGGTTATCCAGGTGTAAACCAAGAAAATGTTATTGGATGTGGAGCTCACACTGAC 775
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 602 TTC-TTGGTTATCCAGGTGTAAACCAAGAAAATGTTATCGGATGTGGAGCTCACACTGAC 660
Query 776 TATGGCTTGTTGACGCTTATAAATCAAGATGATGATAAAACTGCTCTTCAGGTGAAAAAC 835
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 661 TATGGCTTGTTGTCGCTTATAAATCAAGATGATGACAAAACTGCTCTTCAGGTGAGAGAC 720
Query 836 GTGGACGGTGATTGGATACCAGCT-ATTCCGATCCCTGGATCATTTATCTGCAACATCGG 894
||| ||| ||||||| ||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 721 TTGGCCGGCGATTGGACACCAG-TGATTCCGATCCCTGGATCATTTGTCTGCAACATCGG 779
Query 895 TGACATGTTAACGATACTATCAAACGGAGTTTACCAATCCACACTACATAAAGTAATCAA 954
||||||| ||| | | || || |||||||||||| |||||||||| |||| ||| |||||
Sbjct 780 TGACATGCTAAAGTTTCTTTCTAACGGAGTTTACGAATCCACACTTCATAGAGTGATCAA 839
Query 955 TAACTCTCCTAAATACCGTGTATGTGTTGCATTTTTCTACGAGACTAACTTCGAGGCGGA 1014
|||||||||| ||||||||| || || | ||| |||||||||||||||||| | ||||
Sbjct 840 TAACTCTCCTCGATACCGTGTTTGCGTCGGATTCTTCTACGAGACTAACTTCAACGCGGT 899
Query 1015 GGTAGAGCCACTTG-ATATCTTTAAAGAGAAGCATCCACG-AAAAGAAACATCTCAAGTT 1072
||| |||||| ||| ||||||| ||||||||| | ||| | ||||| |||||||||||||
Sbjct 900 GGTGGAGCCA-TTGGATATCTTCAAAGAGAAGTACCCA-GTAAAAGGAACATCTCAAGTT 957
Query 1073 GCCAAAAGAGTCGTCTATGGACAGCATCTGATTAACAAAGTCCTGACAACCTTTGCAAAT 1132
||||||| | ||||||||| |||||||| || ||||| | | ||| |||||| |||||
Sbjct 958 TTCAAAAGAATTGTCTATGGAGAGCATCTGGTTCACAAACTGCAGACCACCTTTACAAAT 1017
Query 1133 TTAGTGGAAAACAGTTAA 1150
||||||||| ||||||||
Sbjct 1018 TTAGTGGAACACAGTTAA 1035
Score = 154 bits (83), Expect = 2e-36
Identities = 133/156 (85%), Gaps = 8/156 (5%)
Strand=Plus/Plus
Query 152 ATGGTGACAGACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCTTTACTGGCCAAA 211
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 ATGGCGACAAACTTCAAATCCCTACTACCAGTTATCGACATCAGTCCTTTAGTGGTCAAA 60
Query 212 TGTGATGATTTCGA-CATGGCTGAGGATGCGGGGGTTGTGGAA-G-TAGTC-GGAAAACT 267
|||||||||| ||| |||||| |||||||| | || | | || | | || ||||| ||
Sbjct 61 TGTGATGATT-CGAACATGGCCGAGGATGCCGACGT-G-GCAAAGGTTGTGAGGAAA-CT 116
Query 268 GGACAGGGCATGTCGGGACGTCGGATTCTTCTACGT 303
||||| ||| |||||||| | |||||||||||||||
Sbjct 117 GGACAAGGCCTGTCGGGATGCCGGATTCTTCTACGT 152
> Ahg485377 jgi|Araly1|485377|fgenesh2_kg.5__1369__AT3G50210.3
Length=1037
Score = 789 bits (427), Expect = 0.0
Identities = 815/997 (82%), Gaps = 47/997 (5%)
Strand=Plus/Plus
Query 177 TACCAGTTATCGACATCA-GTCCTTTACTGGCCAAATGTGATGATTTCGACATGGCTGAG 235
||||||| |||||||| | |||| || ||||||| ||||||||| ||||||||||||
Sbjct 33 TACCAGTCATCGACAT-ATCTCCTCTATTGGCCAAGTGTGATGATCCCGACATGGCTGAT 91
Query 236 GATGCGGGGGTTGTGGAAGTAGT-CGGAAAACTGGACAGGGCATGTCGGGACGTCGGATT 294
||||| || || | || || || ||| ||||||| | || |||||||||| ||||||
Sbjct 92 GATGCCGGCGTGGCCGATGTTGTCCGG-CAACTGGATAAAGCTTGTCGGGACGCCGGATT 150
Query 295 CTTCTACGTGATTGGTCATGGAATATCGGATGA-TCTTATAAATAAGGTGAAAGAGATGA 353
|||||||||||| || |||||||| ||||| || | |||| ||||| || | ||||| |
Sbjct 151 CTTCTACGTGATAGGCCATGGAATTTCGGA-GAGTGTTATGAATAAAGTTAGGGAGATCA 209
Query 354 CGCATCAGTTCTTCGAGCTTCCTTACGAGGAGAAACTTAAGATCAAGATTACTCCAACTG 413
| | | |||||| |||||||||| || || ||||||||||||||||| |||||| |||
Sbjct 210 CTCGTGGGTTCTTTAAGCTTCCTTATGAAGAAAAACTTAAGATCAAGATGACTCCAGCTG 269
Query 414 CTGGATACAGAGGATACCAAAGAATTGGAGTAAATTTTA-CGAGTGGGAAACAAGATATG 472
|||||||||||||||| || |||||||||| |||| | | | || || | || ||||||
Sbjct 270 CTGGATACAGAGGATATCAGAGAATTGGAGAAAATGTAACCAAG-GGTATACCAGATATT 328
Query 473 CACGAAGCCATTGATTGTTACAGAGAG-TTCAAGCAAGGGAAACATGGGGACATCGG-AA 530
||||||||||||||||||||||||||| || ||||| ||||| ||||||| || || ||
Sbjct 329 CACGAAGCCATTGATTGTTACAGAGAGATT-AAGCAGGGGAAGTATGGGGATATAGGCAA 387
Query 531 AGGTCT-TGGAAGGGCCAAACCAGTGGCCAGGA-AATCCTCAAGAGTACAAAGATTTAAT 588
| || | ||||||||||||||||||||||| || ||||||||||||| ||||| || ||
Sbjct 388 A-GT-TATGGAAGGGCCAAACCAGTGGCCA-GAGAATCCTCAAGAGTTTAAAGAATTGAT 444
Query 589 GGAGAAGTATATTAAGCTGTGCACAGATCTTTCTAGAAATATCTTAAGGGGAATCTCATT 648
|||| ||||||||||||| || ||||||||||||||||| ||||| || |||||||| ||
Sbjct 445 GGAGGAGTATATTAAGCTATGTACAGATCTTTCTAGAAAGATCTTGAGAGGAATCTCCTT 504
Query 649 AGCCCTTGGTGGATCACCTTATGAGTTTGAGGGAAAGATG-CTTAGAGACCCTTTTTGGG 707
||| ||| ||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 505 AGCTCTTACTGGATCACCTTATGAGTTTGAGGGAAAGATGGCTG-GTGACCCTTTTTGGG 563
Query 708 TAATGCGTATCATTGGTTATCCAGGTG-T--------AAA---CCAA---GAAAATGTTA 752
| |||||| | |||||||||||||||| | ||| |||| ||||||| ||
Sbjct 564 TGATGCGTCTTATTGGTTATCCAGGTGCTCCCTTCGCAAATGGCCAACCCGAAAATGATA 623
Query 753 TTGGATGTGGAGCTCACACTGACTATGGCTTGTTGACGCTTATAAATCAAGATGATGATA 812
| |||||||||||||||||||||||||||||||| || ||| |||||||||| ||||| |
Sbjct 624 TCGGATGTGGAGCTCACACTGACTATGGCTTGTTAACTCTTGTAAATCAAGACGATGACA 683
Query 813 AAACTGCTCTTCAGGTGAAAAACGTGGACGGTGATTGGATACCAGCTATTCCGATCCCTG 872
|||||||||||||||||| |||| ||| ||| ||||||||| |||| |||| |||||||
Sbjct 684 AAACTGCTCTTCAGGTGAGAAACTTGGGCGGCGATTGGATATCAGCCGTTCCAATCCCTG 743
Query 873 GATCATTTATCTGCAACATCGGTGACATGTTAACGATACTATCAAACGGAGTTTACCAAT 932
|||| ||| | ||||||||||| |||||||||| |||||| ||||||||||| ||| |||
Sbjct 744 GATCGTTTGTTTGCAACATCGGCGACATGTTAAAGATACTTTCAAACGGAGTATACGAAT 803
Query 933 CCACACTACATAAAGTAATCAATAACTCTCCTAAATACCGTGTATGTGTTGCATTTTTCT 992
| ||||| |||| ||| ||||||||||||||| ||||||||| ||||| ||||| ||||
Sbjct 804 CGACACTTCATAGAGTGATCAATAACTCTCCTCTATACCGTGTCTGTGTCGCATTCTTCT 863
Query 993 ACGAGACTAACTTCGAGGCGG-AGGTAGAGCCACTTG-ATATCTTTAAAGAGAAGCATCC 1050
| |||||||| ||||| |||| || | |||||| ||| |||| | |||| ||||| | ||
Sbjct 864 ATGAGACTAATTTCGACGCGGTAG-TGGAGCCA-TTGGATATATGTAAACAGAAGTACCC 921
Query 1051 A-C-GAAA-AGAAACATCTCAAGTTGCCAAAAGAG-TCGTCTATGGACAGCATCT-GATT 1105
| | | || | ||| |||||| |||||| | | ||||| ||| ||||||| | ||
Sbjct 922 TGCAGGGAGAGGAGGATCCCAAGTTTTCAAAAGGGCT-GTCTACGGAGAGCATCTCG-TT 979
Query 1106 AACAAAGTCCTGAC-AACCTTTGCAAATTTAGTGGAA 1141
| ||||||| ||| ||| ||||| | | || |||||
Sbjct 980 AGTAAAGTCCAGACCAAC-TTTGCTA-TGTAATGGAA 1014
> Ahg949369 jgi|Araly1|949369|scaffold_801256.1
Length=213
Score = 158 bits (85), Expect = 1e-37
Identities = 145/172 (84%), Gaps = 11/172 (6%)
Strand=Plus/Plus
Query 133 TCATTT-CCTTAA-TAT-TGAAATGGTGACAGACTTCAAATCCCTACTACCAGTTATCGA 189
|||||| ||||| ||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 TCATTTGTCTTAAGTATCTGAAATGGCGACAAACTTCAAATCCCTACTACCAGTTATCGA 60
Query 190 CATCAGTCCTTTACTGGCCAAATGTGATGATTTCGA-CATGGCTGAGGATGCGGGGGTTG 248
||||||||||||| ||| |||||||||||||| ||| |||||| |||||||| | || |
Sbjct 61 CATCAGTCCTTTAGTGGTCAAATGTGATGATT-CGAACATGGCCGAGGATGCCGACGT-G 118
Query 249 TGGAA-G-TAGTC-GGAAAACTGGACAGGGCATGTCGGGACGTCGGATTCTT 297
| || | | || ||||| ||||||| ||| |||||||| | |||||||||
Sbjct 119 -GCAAAGGTTGTGAGGAAA-CTGGACAAGGCCTGTCGGGATGCCGGATTCTT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5