BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49640.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323545 jgi|Araly1|323545|fgenesh1_pm.C_scaffold_5001089 1668 0.0
Ahg949372 jgi|Araly1|949372|scaffold_801259.1 614 6e-175
> Ahg323545 jgi|Araly1|323545|fgenesh1_pm.C_scaffold_5001089
Length=1632
Score = 1668 bits (903), Expect = 0.0
Identities = 1003/1051 (95%), Gaps = 8/1051 (1%)
Strand=Plus/Plus
Query 1 GGCGTCTTCGAATTTTTCGTGGCTACGTTTGACGGTGCCACGAAGAAGAAGAAGACGAAG 60
|||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 589 GGCGTCTTCGAATTTTTCGTGGCTGCGTTTGACGTTGCCAC------GAAGAAGACGAAG 642
Query 61 ATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTC 120
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 643 ATGGATTACCAGAACAAGCATGTCCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTC 702
Query 121 AGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACGGTGAAGAGATTATTGATCAT 180
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 703 AGGATGTTGGCGGCCGAATACGGCGCCGATATCACATACAGTGAAGAGATTATCGATCAT 762
Query 181 AAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTGGGACATCTGAGTTTGTGGAG 240
|||||||||||||||||||| ||| | || ||||||| ||||||| ||||||||||||||
Sbjct 763 AAGCTTGTTAAATGCGAACGTCGAATTAACGTTGCTTATGGGACAACTGAGTTTGTGGAG 822
Query 241 AAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGA-AAAAAGTAGGGTTGTTTT 299
||||||||||| ||||| ||||||||||||||| | ||||| | ||| ||| ||||||||
Sbjct 823 AAAGGAACAGACAATGTCGTCTTTAGCACATGTAAAGAAGAGAGAAA-TAGAGTTGTTTT 881
Query 300 TCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTGTGTAATGA 359
||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||
Sbjct 882 TCAAATGGGAACTTCTGATGCTGTTAGGGCTCTAAAAGCTGCTGAGATTGTGTGCAACGA 941
Query 360 CGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCATTCTCTATCCAAGGTGGAAT 419
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 942 CGTTGCAACTGTTGATATTAATATGGGTTGCCCCAAGGCGTTCTCTATCCAAGGAGGAAT 1001
Query 420 GGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGATATTTTGGCAACACTTAAGAG 479
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1002 GGGTGCTGCTTTGTTAAGTAAACCCGAACTTATTCATGATATTTTGGCAACACTTAAGAG 1061
Query 480 GAACTTAGACGTACCGGTTACTTGCAAGATTCGTCTATTAAAATCACCAGCAGATACTGT 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1062 GAACTTAGACGTACCGGTTACTTGCAAGATTCGTTTATTAAAATCACCAGCAGATACTGT 1121
Query 540 TGAATTGGCTAGGAGAATCGAGAAACTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1122 TGAATTGGCTAGGAGAATCGAGAAGCTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAA 1181
Query 600 AATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGC 1241
Query 660 ATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTAGAATATGATGATTTTTCTCGCAT 719
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1242 ATTATCTATTCCCGTCATTGCAAATGGCGATGTTTTAGAATACGATGATTTTTCTCGCAT 1301
Query 720 TAAAACCGCAACAGGCGCTGCATCAGTTATGGTTGCAAGAGGAGCTATGTGGAATGCTTC 779
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 TAAAACTGCAACAGGCGCTGCATCAGTGATGGTTGCAAGAGGAGCTATGTGGAATGCTTC 1361
Query 780 AATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 AATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAA 1421
Query 840 GAGCATCTTGTGGAATAACGATGTTAAGAGCACGAAATACACGATAAAGGAGATGATAGC 899
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1422 GAGCATCTTGTGGAATAACGATGTCAAGAGCACGAAATACACGATAAAGGAGATGATAGC 1481
Query 900 GCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAAAGCAGACACTTTAGA 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1482 GCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAGAGCAGACACTTTAGA 1541
Query 960 AGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 AGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCC 1601
Query 1020 ACTGACACATAACTTAAACCATGTTTTATGA 1050
|||||||||| ||||||| ||||||||||||
Sbjct 1602 ACTGACACATGACTTAAATCATGTTTTATGA 1632
> Ahg949372 jgi|Araly1|949372|scaffold_801259.1
Length=2320
Score = 614 bits (332), Expect = 6e-175
Identities = 391/420 (93%), Gaps = 2/420 (0%)
Strand=Plus/Plus
Query 41 CGAAGAAGAAGAAGACGAAGATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTC 100
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CGAAGAAGAAGACGACGAAGATGGATTACCAGAACAAGCTTGTTCTTGCTCCCATGGTTC 60
Query 101 GTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACG 160
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCCGAATACGGCGCCGATATCACATACG 120
Query 161 GTGAAGAGATTATTGATCATAAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTG 220
||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||| ||
Sbjct 121 GTGAAGAGATTATCGATCATAAGCTTGTTAAATGCGAACGTCGAATTAACGTTGCTTATG 180
Query 221 GGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAG 280
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||
Sbjct 181 GGACAACTGAGTTTGTGGAGAAAGGAACAGACAATGTCGTCTTTAGCACATGTAAAGAAG 240
Query 281 AAA-AAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCT 339
| | ||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 241 AGAGAAA-TAGAGTTGTTTTTCAAATGGGAACTTCTGATGCTGTTAGGGCTCTAAAAGCT 299
Query 340 TCTGAGATTGTGTGTAATGACGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCA 399
||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 GCTGAGATTGTGTGCAACGACGTTGCAACTGTTGATATTAATATGGGTTGCCCCAAGGCG 359
Query 400 TTCTCTATCCAAGGTGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGAT 459
|||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 360 TTCTCTATTCAAGGAGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAACTTATTCATGAT 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5