BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49640.1 Length=1224 Score E Sequences producing significant alignments: (Bits) Value Ahg323545 jgi|Araly1|323545|fgenesh1_pm.C_scaffold_5001089 1668 0.0 Ahg949372 jgi|Araly1|949372|scaffold_801259.1 614 6e-175 > Ahg323545 jgi|Araly1|323545|fgenesh1_pm.C_scaffold_5001089 Length=1632 Score = 1668 bits (903), Expect = 0.0 Identities = 1003/1051 (95%), Gaps = 8/1051 (1%) Strand=Plus/Plus Query 1 GGCGTCTTCGAATTTTTCGTGGCTACGTTTGACGGTGCCACGAAGAAGAAGAAGACGAAG 60 |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| Sbjct 589 GGCGTCTTCGAATTTTTCGTGGCTGCGTTTGACGTTGCCAC------GAAGAAGACGAAG 642 Query 61 ATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTC 120 |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 643 ATGGATTACCAGAACAAGCATGTCCTTGCTCCCATGGTTCGTGTGGGAACGCTCTCTTTC 702 Query 121 AGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACGGTGAAGAGATTATTGATCAT 180 |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 703 AGGATGTTGGCGGCCGAATACGGCGCCGATATCACATACAGTGAAGAGATTATCGATCAT 762 Query 181 AAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTGGGACATCTGAGTTTGTGGAG 240 |||||||||||||||||||| ||| | || ||||||| ||||||| |||||||||||||| Sbjct 763 AAGCTTGTTAAATGCGAACGTCGAATTAACGTTGCTTATGGGACAACTGAGTTTGTGGAG 822 Query 241 AAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGA-AAAAAGTAGGGTTGTTTT 299 ||||||||||| ||||| ||||||||||||||| | ||||| | ||| ||| |||||||| Sbjct 823 AAAGGAACAGACAATGTCGTCTTTAGCACATGTAAAGAAGAGAGAAA-TAGAGTTGTTTT 881 Query 300 TCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCTTCTGAGATTGTGTGTAATGA 359 ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| || || Sbjct 882 TCAAATGGGAACTTCTGATGCTGTTAGGGCTCTAAAAGCTGCTGAGATTGTGTGCAACGA 941 Query 360 CGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCATTCTCTATCCAAGGTGGAAT 419 |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 942 CGTTGCAACTGTTGATATTAATATGGGTTGCCCCAAGGCGTTCTCTATCCAAGGAGGAAT 1001 Query 420 GGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGATATTTTGGCAACACTTAAGAG 479 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1002 GGGTGCTGCTTTGTTAAGTAAACCCGAACTTATTCATGATATTTTGGCAACACTTAAGAG 1061 Query 480 GAACTTAGACGTACCGGTTACTTGCAAGATTCGTCTATTAAAATCACCAGCAGATACTGT 539 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1062 GAACTTAGACGTACCGGTTACTTGCAAGATTCGTTTATTAAAATCACCAGCAGATACTGT 1121 Query 540 TGAATTGGCTAGGAGAATCGAGAAACTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAA 599 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1122 TGAATTGGCTAGGAGAATCGAGAAGCTTGGTGTACCAGCTCTTGCTGTACATGGGAGGAA 1181 Query 600 AATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 AATTGCAGACAGGCCAAGAGATCCTGCTAAATGGGATGAGATTGCAGATGTGGTGGCAGC 1241 Query 660 ATTATCCATTCCCGTCATTGCAAATGGCGATGTTTTAGAATATGATGATTTTTCTCGCAT 719 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1242 ATTATCTATTCCCGTCATTGCAAATGGCGATGTTTTAGAATACGATGATTTTTCTCGCAT 1301 Query 720 TAAAACCGCAACAGGCGCTGCATCAGTTATGGTTGCAAGAGGAGCTATGTGGAATGCTTC 779 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1302 TAAAACTGCAACAGGCGCTGCATCAGTGATGGTTGCAAGAGGAGCTATGTGGAATGCTTC 1361 Query 780 AATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 AATTTTCTCTCCAAAAGGAAAATCACACTGGGAAGATGTGAAAAAGAAATACCTTAGAAA 1421 Query 840 GAGCATCTTGTGGAATAACGATGTTAAGAGCACGAAATACACGATAAAGGAGATGATAGC 899 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1422 GAGCATCTTGTGGAATAACGATGTCAAGAGCACGAAATACACGATAAAGGAGATGATAGC 1481 Query 900 GCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAAAGCAGACACTTTAGA 959 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1482 GCATCATTCTTGTCTTGAACTACCGGAAGGGAAGTCTATCAACAGAGCAGACACTTTAGA 1541 Query 960 AGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCC 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1542 AGATTTAGCGCGGCTTTACGATTTAGAAGATTACTTTTGGACAGTGAAGAACATTGGTCC 1601 Query 1020 ACTGACACATAACTTAAACCATGTTTTATGA 1050 |||||||||| ||||||| |||||||||||| Sbjct 1602 ACTGACACATGACTTAAATCATGTTTTATGA 1632 > Ahg949372 jgi|Araly1|949372|scaffold_801259.1 Length=2320 Score = 614 bits (332), Expect = 6e-175 Identities = 391/420 (93%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 41 CGAAGAAGAAGAAGACGAAGATGGATTATCAGAACAAGCTTGTTCTTGCTCCCATGGTTC 100 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 CGAAGAAGAAGACGACGAAGATGGATTACCAGAACAAGCTTGTTCTTGCTCCCATGGTTC 60 Query 101 GTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCGGAATACGGCGCCGATATCACATACG 160 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 GTGTGGGAACGCTCTCTTTCAGGATGTTGGCGGCCGAATACGGCGCCGATATCACATACG 120 Query 161 GTGAAGAGATTATTGATCATAAGCTTGTTAAATGCGAACGCCGACTCAATGTTGCTTCTG 220 ||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||| || Sbjct 121 GTGAAGAGATTATCGATCATAAGCTTGTTAAATGCGAACGTCGAATTAACGTTGCTTATG 180 Query 221 GGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAG 280 ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| | |||| Sbjct 181 GGACAACTGAGTTTGTGGAGAAAGGAACAGACAATGTCGTCTTTAGCACATGTAAAGAAG 240 Query 281 AAA-AAAGTAGGGTTGTTTTTCAGATGGGAACTTCTGATGCTGTTAGGGCTCTAAAGGCT 339 | | ||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 241 AGAGAAA-TAGAGTTGTTTTTCAAATGGGAACTTCTGATGCTGTTAGGGCTCTAAAAGCT 299 Query 340 TCTGAGATTGTGTGTAATGACGTTGCAACTATTGATATTAATATGGGTTGCCCCAAGGCA 399 ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| Sbjct 300 GCTGAGATTGTGTGCAACGACGTTGCAACTGTTGATATTAATATGGGTTGCCCCAAGGCG 359 Query 400 TTCTCTATCCAAGGTGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAGCTAATTCATGAT 459 |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||| Sbjct 360 TTCTCTATTCAAGGAGGAATGGGTGCTGCTTTGTTAAGTAAACCCGAACTTATTCATGAT 419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45709377483 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5