BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49645.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947539 jgi|Araly1|947539|scaffold_703768.1 963 0.0
Ahg323545 jgi|Araly1|323545|fgenesh1_pm.C_scaffold_5001089 446 2e-124
> Ahg947539 jgi|Araly1|947539|scaffold_703768.1
Length=732
Score = 963 bits (521), Expect = 0.0
Identities = 652/713 (91%), Gaps = 17/713 (2%)
Strand=Plus/Plus
Query 89 TGAAAGACGAGGACATGGAAACGAGAATAGAACTGAAGAAGAAAATTTCCGAGATTTTCA 148
|||||||||| |||| |||| ||||||| |||| |||||||||||| |||||||||||||
Sbjct 23 TGAAAGACGAAGACAGGGAAGCGAGAATCGAACAGAAGAAGAAAATATCCGAGATTTTCA 82
Query 149 AAGACTTTATGACAGTAATCACGCAGCTTGAAGAACTAGGGAATGCTGCAAACAACTTTC 208
|||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 83 AAGATTTTATGACAGGAATCACACAGCTTGAGGAACTAGGGAATGCTGCAAACAACTTTC 142
Query 209 TTCTACGGTTTCAGCAAGGACTAAGTTTTCTTCAACGCCCTCCAATAGTTACTTCGTCCA 268
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 143 TTCTTCGGTTTCAGCAAGGACTAAGTTTTCTTCAACGCCCTCCAATGGTTACTTCGTCTA 202
Query 269 AGTTGATTGAGAACATTATCAAGAAGAATGAAACAAGGCGGCTTAAATCATATATCGAGG 328
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 203 AGTTGATGGAGAACATTATCAAGAAGAATGAAACAAGACGGCTTAAATCATATATGGAAG 262
Query 329 CAGGATGTATTAATATCCATGATGCTGCACAAAGCACAAGAGCTTTGCATACATCTCTAT 388
| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 263 CGGGATGTATTAACATCCACGATGCTGCACAAAGTACAAGAGCTTTGCATACATCCCTAT 322
Query 389 CAGGACTTTCTGACCACCTAATCAAAGCCAAAAACTTGTTGATTGAGCTGGAACGTCTCA 448
| ||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||
Sbjct 323 CTGGACTTTCTGACCACCTAATCAAAGCCAAAAGCTTGTTAATTGAGCTTGAGCGTCTCA 382
Query 449 CTGATGAGGCCGCCCTTGCAATTGAGTCTGCCACACAG----C--TA--G--A--TAAAG 496
| ||||| || |||||||| |||||| ||||||||||| | || | | ||||
Sbjct 383 CCGATGAAGCAGCCCTTGCCATTGAGACTGCCACACAGTTTTCCGTACAGCTAGATAAAT 442
Query 497 ACTCAAGTGATGGATTGCAACAAGTAACATGTGATGAGGAGAACGAGACTGTACAATTAC 556
|||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 443 ACTCAAGTGATGAATTGCAACAAGTAACGTGTGATGAGGAGAACGAGACTGCACAATTAC 502
Query 557 CTCAAGGACCTGAAGTTAC-AGAGTACGCTGCACTTATTGCAGTTATTTACAGTATGATG 615
||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 503 CTCAAGGACCTGAAGTT-CTAGAGTACGCTGCACTTATCGCAGTTATTTACAGTATGATG 561
Query 616 AAGCAGAACTATGTTATGCAGGATAAGATTGTGAGATCGCTTAGTTTGAAGTCATCATCT 675
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 562 AAGCAGAACTATGCGATGCAGGAAAAGATTGTGAGATCGCTTAGTTTGAAGTCATCATCT 621
Query 676 GGTGAGCTAGAGACTTACAGTCTGATGTGGTCATTGCGCCCGTTTGTAGAAGATGAGATT 735
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 622 GGTGAGCTAGAGAGTTACAGTCTGATGTGGTCATTGCGTCCGTTTGTAGAAGATGAGATT 681
Query 736 GTGAACAGAGCATGGAAATGGATATACTAAAAATACTATTTTCATCCAATTTT 788
|||||||| |||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct 682 GTGAACAGTGCATGGAAATGGATTTACTAAAAATA-T-TTT-CATCCAATTTT 731
> Ahg323545 jgi|Araly1|323545|fgenesh1_pm.C_scaffold_5001089
Length=1632
Score = 446 bits (241), Expect = 2e-124
Identities = 284/305 (93%), Gaps = 1/305 (0%)
Strand=Plus/Plus
Query 414 AGCCAAAAACTTGTTGATTGAGCTGGAACGTCTCACTGATGAGGCCGCCCTTGCAATTGA 473
|||||||| |||||| ||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 285 AGCCAAAAGCTTGTTAATTGAGCTGGAGCATCTCACTGATGAGGCCGCTCTTGCAATTGA 344
Query 474 GTCTGCCACACAGCTAGATAAAGACTCAAGTGATGGATTGCAACAAGTAACATGTGATGA 533
||||||||| ||||||||||||||||||||| ||| ||||| |||||| || ||||||||
Sbjct 345 GTCTGCCACGCAGCTAGATAAAGACTCAAGTAATGAATTGCGACAAGTTACGTGTGATGA 404
Query 534 GGAGAACGAGACTGTACAATTACCTCAAGGACCTGAAGTTACAGAGTACGCTGCACTTAT 593
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GGAGAACGGGACTGCACAATTACCTCAAGGACCTGAAGTTACAGAGTACGCTGCACTTAT 464
Query 594 TGCAGTTATTTACAGTATGATGAAGCAGAACTATGTTATGCAGGATAAGATTGTGAGATC 653
||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 465 CGCAGTAATTTACAATATGATGAAGCAGAACTATGCGATGCAGGAAAAGATTGTGAGATC 524
Query 654 GCTTAGTTTGAAGTCATCATCTGGTGAGCTAGAGACTTACAGTCTGATGTGGTCATTGCG 713
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 525 GCTTAGTTTGAAGTCATCATCTGGTGAGCTAGAGAGTTACAGTCTGATGTGGTCATTGCG 584
Query 714 -CCCG 717
||||
Sbjct 585 TCCCG 589
Score = 390 bits (211), Expect = 8e-108
Identities = 252/272 (93%), Gaps = 2/272 (1%)
Strand=Plus/Plus
Query 103 ATGGAAACGAGAAT-AGAACTGAAGAAGAAAATTTCCGAGATTTTCAAAGACTTTATGAC 161
|||||||| ||||| | ||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct 1 ATGGAAACTAGAATCA-AACAGAAGAAGAAAATATCCGAGATTTTCAAAGATTTTATGAC 59
Query 162 AGTAATCACGCAGCTTGAAGAACTAGGGAATGCTGCAAACAACTTTCTTCTACGGTTTCA 221
|| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AGGAATCACACAGCTTGAGGAACTAGGGAATGCTGCAAACAACTTTCTTCTTCGGTTTCA 119
Query 222 GCAAGGACTAAGTTTTCTTCAACGCCCTCCAATAGTTACTTCGTCCAAGTTGATTGAGAA 281
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 120 GCAAGGACTAAGTTTTCTTCAACGCCCTCCAATGGTTACTTCGTCTAAGTTGATGGAGAA 179
Query 282 CATTATCAAGAAGAATGAAACAAGGCGGCTTAAATCATATATCGAGGCAGGATGTATTAA 341
||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||
Sbjct 180 CATTATCAAGAAGAATGAAACTCGACGGCTTAAATCATATATGGAAGCAGGATGTATTAA 239
Query 342 TATCCATGATGCTGCACAAAGCACAAGAGCTT 373
|||||||||||| |||||||| ||||||||||
Sbjct 240 TATCCATGATGCGGCACAAAGTACAAGAGCTT 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5