BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49660.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485324 jgi|Araly1|485324|fgenesh2_kg.5__1316__AT3G49660.1 1522 0.0
> Ahg485324 jgi|Araly1|485324|fgenesh2_kg.5__1316__AT3G49660.1
Length=1282
Score = 1522 bits (824), Expect = 0.0
Identities = 988/1066 (93%), Gaps = 15/1066 (1%)
Strand=Plus/Plus
Query 14 AGACAAAGCCTCCTTTCCCAAAACCCTAAAATCAGCCAAATTCAAATTCCG-CTAACCAA 72
|||||||||| ||||||| |||||||| |||||||||||||||||| |||| | ||||
Sbjct 1 AGACAAAGCCCCCTTTCCAAAAACCCT-AAATCAGCCAAATTCAAA-TCCGCCGAACC-- 56
Query 73 TTT--CCATGGCAGAGGAAATTCCAGCAACAGCATCATTCACTCCATACGTCCATTCACA 130
||| |||||||||||||| ||||||||||||||||||| ||||| |||||||| || ||
Sbjct 57 TTTAGCCATGGCAGAGGAAGTTCCAGCAACAGCATCATTTACTCCCTACGTCCACTCCCA 116
Query 131 AACTCTAACATCTCACAATCGCGCCGTCTCCTCCGTGAAATTCTCCTCCGATGGACGTCT 190
||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 117 AACCCTAACTTCTCACATTCGCGCCGTCTCCTCCGTGAAATTCTCCTCCGATGGCCGTCT 176
Query 191 CCTCGCATCCGCCTCCGCCGACAAAACAATCCGCACTTACACAATCAACACC-ATTAACG 249
||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||
Sbjct 177 CCTCGCATCCGCCTCCGCCGACAAAACCATCCGTACTTACACCGTCAACACCGA-AAACG 235
Query 250 ATCCAATCGCCGAGCCCGTACAAGAATTCACCGGCCATGAAAACGGTATCTCCGATGTTG 309
| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 236 AAACAATCGCCGAGCCCGCACGAGAATTCACCGGCCATGAAAACGGTATCTCCGATGTTG 295
Query 310 CATTCTCTTCAGACGCGAGGTTTATAGTCTCAGCTTCCGATGACAAAACCTTAAAGCTAT 369
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CCTTTTCTTCAGACGCGAGGTTTATAGTCTCAGCTTCCGATGACAAAACCTTAAAGCTAT 355
Query 370 GGGACGTTGAAACTGGTTCATTGATCAAGACGCTTATTGGACACACTAATTACGCCTTCT 429
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 356 GGGACGTTGAAACTGGTTCATTGATCAAAACGCTTATCGGACACACTAATTACGCCTTTT 415
Query 430 GTGTCAATTTCAATCCTCAATCAAATATGATTGTATCTGGTTCGTTTGATGAAACTGTTC 489
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 GTGTCAATTTCAATCCTCAATCAAACATGATTGTATCTGGTTCGTTTGATGAAACTGTTC 475
Query 490 GGATCTGGGATGTCACTACTGGAAAGTGTTTGAAAGTTCTTCCCGCGCATTCTGATCCTG 549
|||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 GGATTTGGGATGTTACTACCGGAAAATGTTTGAAAGTTCTTCCCGCGCATTCTGATCCTG 535
Query 550 TTACTGCTGTTGATTTTAATAGAGATGGGTCTCTCATTGTTTCGAGTAGCTATGATGGGT 609
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTACCGCCGTTGATTTTAATCGAGATGGGTCTCTCATTGTTTCGAGTAGCTATGATGGGT 595
Query 610 TGTGTCGTATATGGGATTCTGGGACTGGTCATTGTGTGAAAAC-TCTGATTGATGATGAG 668
|||||||||||||||||||||||||||| |||||| | ||||| | | ||||||||||||
Sbjct 596 TGTGTCGTATATGGGATTCTGGGACTGGACATTGTATAAAAACGT-TAATTGATGATGAG 654
Query 669 AATCCTCCTGTTTCGTTTGTTAGATTCTCTCCTAATGGCAAGTTTATCCTCGTTGGTACA 728
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 655 AATCCTCCTGTTTCGTTTGTTAGATTCTCTCCCAATGGCAAGTTTATTCTTGTTGGTACA 714
Query 729 CTTGATAACACGCTGAGGTTGTGGAACATTTCGTCTGCTAAGTTCCTCAAAACATACACT 788
|| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 715 CTGGATAACACACTGAGGTTGTGGAACATTGCGTCTGCTAAGTTCCTCAAAACATATACG 774
Query 789 GGCCACGTGAACGCACAGTATTGCATTTCCTCTGCGTTCTCCGTCACAAATGGAAAGCGA 848
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGCCATGTGAACGCACAGTATTGCATTTCCTCTGCGTTCTCCGTCACAAATGGAAAGCGG 834
Query 849 ATAGTCAGTGGATCCGAGGACAACTGTGTACACATGTGGGAGCTAAACTCCAAGAAACTG 908
||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 835 ATAGTTAGTGGATCCGAGGACAACTGTGTATACATGTGGGAGTTAAACTCCAGGAAACTG 894
Query 909 CTACAGAAACTTGAGGGTCATACTGAGACCGTCATGAACGTAGCATGCCACCCGACAGAG 968
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 895 CTTCAGAAACTTGAGGGTCATACTGAGACCGTCATGAACGTGGCATGCCACCCAACAGAG 954
Query 969 AACTTGATCGCATCAGGCTCGCTCGACAAGACAGTAAGGATTTGGACACAGAAGAAAGAA 1028
|||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 955 AACTTGATCGCATCAGGCTCACTCGACAAGTCTGTTAGGATTTGGACACAGAAGAAAGAA 1014
Query 1029 T-AA--ATCA-TCACTCTCTCTCTTCAGAAATCAAACATGTAGGTA 1070
| || | || || ||||||||||||| |||||| |||||||||||
Sbjct 1015 TGAACCACCACTCTCTCTCTCTCTTCAAAAATCATACATGTAGGTA 1060
Score = 211 bits (114), Expect = 1e-53
Identities = 177/203 (87%), Gaps = 22/203 (11%)
Strand=Plus/Plus
Query 1104 GCTTACTAAGCTTGTTAGATTGATTCTAGCCTCATTATGTAAAAGT-CTAATTTTTGTTT 1162
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 1061 GCTTACTAAGCTTGTTAGATTGATTCTAGCCTCATTATGTAAAAGTGC-AATTTTTG--T 1117
Query 1163 GGTGTAAGGGAAGTGCAACAGACTGTTCTAAACTTGTAATAGTTCTCTGTGTGACTCAGA 1222
| | | |||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1118 --T-T----G--GTGC--GAGACTGTTGTAAACTTGTAGTAGTTCTCTGTGTGACTCAGA 1166
Query 1223 ACTATTTAGGTAGGTCTTAAGGCAAAGAC-T------CCTGCAAGTGCAAAGGCATTTGA 1275
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1167 ACTATTTAGGTAGGTCTTAAGGCAAAGACATTGGAATCCTGCAAGTGCAAAGGCATTTGT 1226
Query 1276 GAGAATGAACACAAATCTTCATA 1298
|||||||||||||||||||||||
Sbjct 1227 GAGAATGAACACAAATCTTCATA 1249
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1315 ATTGTATCTATTAAGCTGATGCAATGCTTC 1344
||||||||||||||||||||||||||||||
Sbjct 1250 ATTGTATCTATTAAGCTGATGCAATGCTTC 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5