BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49680.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485328 jgi|Araly1|485328|fgenesh2_kg.5__1320__AT3G49680.1 2108 0.0
Ahg951435 jgi|Araly1|951435|scaffold_803322.1 904 0.0
> Ahg485328 jgi|Araly1|485328|fgenesh2_kg.5__1320__AT3G49680.1
Length=1477
Score = 2108 bits (1141), Expect = 0.0
Identities = 1342/1437 (93%), Gaps = 22/1437 (2%)
Strand=Plus/Plus
Query 95 AGACACATTGTGAAGATAGaaaaaaaTGGAGAGAGCAGCAATTCTCCCGAGTGTTAATCA 154
||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||
Sbjct 46 AGACACATTGTGAAGATAG--AAAAATGGAGAGAGCTGCGATTCTCCCGAGTGTGAATCA 103
Query 155 AAATTACCTACTTTGTCCTTCACGCGCCTTCTCCACGCGCCTCCA------CTCCTCTAC 208
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 104 AAATTACCTACTTTGCCCTTCACGCGCCTTCTCCACCCGCCTCCACTCTTTCTCCTCTAC 163
Query 209 TCGTAACTTATCGCCGCCGTCATTTGCCTCCATCAAGCTTCAGCATTCTTCTTCCTCTG- 267
||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 164 TCGTAACTTCTCGCCGCCGTCATTTTCCTCCATCAAGCTTCAATATTTTTCTTCCTCTGT 223
Query 268 -T-TT-C--T-TC--TAATGGTGGAATCTCTCTTACTCGATGCAACGCTGTTTC-GTCCA 318
| || | | || |||||||||||||| ||||||||||||||||||| | | |||||
Sbjct 224 ATCTTCCAATGTCAGCAATGGTGGAATCTCACTTACTCGATGCAACGCTG-TGCTGTCCA 282
Query 319 ATTCTTCCAGTACGTTGGTAACTGAATTAGCCGACATAGATTGGGATACCGTTGGATTTG 378
|||||||||||||| ||| ||||| ||||||||||||||||||||| | |||||||||
Sbjct 283 ATTCTTCCAGTACGGAGGTGTCTGAAGTAGCCGACATAGATTGGGATAACATTGGATTTG 342
Query 379 GGCTTAAGCCAG-CTGATTATATGTATGTGATGAAATGTAACATTGATGGAGAGTTCTCA 437
|||||||||| | ||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 343 GGCTTAAGCC-GACTGATTACATGTATGTGATGAAATGTAACATCGATGGAGAATTCTCA 401
Query 438 AAAGGTGAGTTGCAACGTTTTGGGAATATTGAAATTAGCCCATCTGCTGGTGTACTCAAC 497
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 402 AAAGGTGAATTGCAACGTTTTGGGAACATTGAAGTTAGCCCATCTGCTGGTGTTCTCAAC 461
Query 498 TATGGACAGGGATTGTTTGAAGGGCTAAAAGCTTACAGAAAGAAAGATGGTAATAACATC 557
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 462 TATGGACAGGGATTGTTTGAAGGGCTAAAAGCTTACAGAAAGGAAGATGGTAATAACATT 521
Query 558 CTCCTCTTTCGTCCTGAGGAGAATGCAAAGCGTATGAGAAATGGTGCTGAGAGGATGTGT 617
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 522 CTCCTCTTTCGTCCTGAGGAGAATGCAAACCGTATGAGAAATGGTGCTGAGAGGATGTGT 581
Query 618 ATGCCTGCTCCAACCGTTGAGCAGTTTGTAGAAGCTGTGACAGAAACTGTACTAGCAAAC 677
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| |||
Sbjct 582 ATGCCTGCTCCAACCGTTGAGCAGTTTGTCGAAGCTGTGAAAGAAACTGTATTAGCGAAC 641
Query 678 AAACGTTGGGTTCCACCACCAGGTAAAGGTTCCTTATATGTTAGACCATTGCTAATGGGA 737
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 642 AAACGTTGGGTTCCGCCACCAGGTAAAGGTTCCTTATATGTCAGACCGTTGCTAATGGGA 701
Query 738 ACAGGAGCTGTTCTTGGTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ACAGGAGCTGTTCTTGGTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCG 761
Query 798 CCTGTTGGGAACTACTTCAAGGAAGGTGTGGCACCTATCAATTTGATTGTGGAGAATGAA 857
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 762 CCTGTCGGGAACTACTTCAAGGAAGGTGTGGCACCGATCAATTTGATTGTGGAAAATGAA 821
Query 858 TTTCACCGTGCAACTCCTGGTGGTACCGGAGGTGTTAAAACCATAGGCAATTATGCTGCA 917
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 822 TTTCACCGTGCAACTCCTGGTGGTACCGGAGGTGTTAAAACCATCGGCAATTATGCTGCA 881
Query 918 GTACTGAAGGCACAGTCAATTGCGAAAGCTAAAGGATATTCCGATGTTTTGTACCTTGAT 977
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 882 GTACTGAAGGCACAGTCGATTGCGAAAGCCAAAGGATATTCCGATGTTTTGTACCTTGAT 941
Query 978 TGCATTTACAAAAGATATCTTGAGGAGGTCTCGTCTTGCAATATTTTCATCGTGAAGGAC 1037
|| |||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 942 TGTGTTTACAAAAGATTTCTTGAGGAGGTCTCATCCTGCAATATTTTCATCGTGAAGGAC 1001
Query 1038 AATGTGATATCTACTCCTGAAATAAAAGGAACCATTTTACCCGGTATTACTCGAAAAAGT 1097
|||||||| |||||||||||||||||||||||||||||||| || || || || ||||||
Sbjct 1002 AATGTGATCTCTACTCCTGAAATAAAAGGAACCATTTTACCTGGGATCACACGGAAAAGT 1061
Query 1098 ATGATAGACGTGGCTCGAACACAAGGGTTTCAGGTGGAGGAACGGAATGTGACAGTGGAT 1157
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ATAATAGACGTGGCTCGAACTCAAGGGTTTCAGGTGGAGGAACGGAATGTGACAGTGGAT 1121
Query 1158 GAATTGTTAGAAGCAGACGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCTGTT 1217
||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1122 GAATTATTAGAAGCGGATGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCAGTT 1181
Query 1218 GGAAGCGTCACTTACAAAGGCAAAAGAGTGTCTTACGGAGAAGGTACCTTCGGAACTGTG 1277
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1182 GGAAGCGTTACTTACAAAGGCAAAAGAGTGTCTTATGGAGAAGGTACCTTCGGAACTGTC 1241
Query 1278 TCGAAGCAACTCTACACCGTTCTGACAAGCTTGCAGATGGGTCTGATTGAAGACAACATG 1337
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TCGAAGCAACTCTACACTGTTCTGACAAGCTTGCAGATGGGTCTGATTGAAGACAACATG 1301
Query 1338 AAATGGACTGTGAATCTTAGTTAAGCCAGGCGAATGCATTGCATCAATTCGGCTGCTTGG 1397
||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1302 AAATGGACTGTGAATCTGAGTTAAGCCAGGCAAATGCATTT-ATCAATTCGGCTGCTTGG 1360
Query 1398 TTTTGCTTTCTTTTCTTTGGTCTGTGGTTCTGATTCGTGAAACTATGAGTTGGATTGTTT 1457
||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1361 TTTTGTTTTCTTTTCTTTGGTCTGTGATTCTGATTCGTGAAACTATAAGTTGGATTGTTT 1420
Query 1458 AGAATCTGGTTGATCTAGAACTTAGCTGGTTCAAGATCATTAGATGTTGTTGCATCA 1514
|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1421 AGAATCTGGTCGATCTAGAACTTAGCTGGTTCAAGATCAGTAGATGTTGTTACATCA 1477
> Ahg951435 jgi|Araly1|951435|scaffold_803322.1
Length=1288
Score = 904 bits (489), Expect = 0.0
Identities = 861/1040 (83%), Gaps = 27/1040 (3%)
Strand=Plus/Plus
Query 339 ACTGAATTAGCCGACATAGATTGGGATACCG-TTGGA-TTTGGGCTTAAGCCAGCTGATT 396
|||||||||||||| || |||||||| | | || || |||||||| || ||| | ||||
Sbjct 249 ACTGAATTAGCCGAAATTGATTGGGACA-AGATT-GATTTTGGGCTAAAACCAACGGATT 306
Query 397 ATATGTATGTGATGAAATGTAACATTGATGGAGAGTTCTCAAAAGGTGAGTTGCAACGTT 456
| ||||| | |||||||||| | |||||| || ||||| ||||| | |||| | ||
Sbjct 307 ACATGTACGCCATGAAATGTAGCCGTGATGGTGAATTCTCTCAAGGTCAATTGCTTCCTT 366
Query 457 TTGGGAATATTGAAATTAGCCCATCTGCTGGTGTACTCAACTATGGACAGGGATTGTTTG 516
|||| || |||||||| | |||||| |||| ||||||||||||||| || || |||||||
Sbjct 367 TTGGTAACATTGAAATCAACCCATCAGCTGCTGTACTCAACTATGGTCAAGGTTTGTTTG 426
Query 517 AAGGGCTAAAAGCTTACAGAAAGA-AAGATGGTAATAACATCCTCCTCTTTCGTCCTGAG 575
|||| ||||||||||||||||| | |||| || |||||| |||||||| |||||||||
Sbjct 427 AAGGACTAAAAGCTTACAGAAA-ACAAGACGG---TAACATTCTCCTCTTCCGTCCTGAG 482
Query 576 GAGAATGCAAAGCGTATGAGAAATGGTGCTGAGAGGATGTGTATGCCTGCTCCAACCGTT 635
|||||||| | || |||| |||||| ||||| || ||||| |||||| ||||||||||
Sbjct 483 GAGAATGCGATCCGAATGATAAATGGCGCTGAAAGAATGTGCATGCCTTCTCCAACCGTC 542
Query 636 GAGCAGTTTGTAGAAGCTGTGACAGAA--ACTGTACTAGCAAACAAACGTTGGGTTCCAC 693
| |||||||| || ||||||| | || |||||| |||||||| |||| ||| ||||||
Sbjct 543 CAACAGTTTGTTGAGGCTGTGA-A-AACTACTGTATTAGCAAACCAACGCTGGATTCCAC 600
Query 694 CACCAGGTAAAGGTTCCTTATATGTTAGACCATTGCTAATGGGAACAGGAGCTGTTCTTG 753
| |||||||||||||| ||||| | || |||||||| |||||||| |||||||||||||
Sbjct 601 CTCCAGGTAAAGGTTCATTATACATAAGGCCATTGCTTATGGGAACTGGAGCTGTTCTTG 660
Query 754 GTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCGCCTGTTGGGAACTACT 813
||||||| ||||| || ||||| |||||| | |||| |||||| || || ||||||||||
Sbjct 661 GTCTTGCTCCTGCTCCTGAATACACTTTCCTCATCTTTGTTTCACCCGTCGGGAACTACT 720
Query 814 TCAAGGAAGGTGTGGCACCTATCAATTTGATTGTGGAGAATGAATTTCACCGTGCAACTC 873
||||||||||||| || || ||||| || ||||| || |||||||| || ||||||||||
Sbjct 721 TCAAGGAAGGTGTTGCGCCGATCAACTTAATTGTTGAAAATGAATTCCATCGTGCAACTC 780
Query 874 CTGGTGGTACCGGAGGTGTTAAAACCATAGGCAATTATGCTGCAGTAC-TGAAGGCACAG 932
|||| ||||| ||||||||||||||||| || |||||||||||||| | |||| ||||||
Sbjct 781 CTGGCGGTACTGGAGGTGTTAAAACCATCGGTAATTATGCTGCAGT-CTTGAAAGCACAG 839
Query 933 TCAATTGCGAAAGCTAAAGGATATTCCGATGTTTTGTACCTTGATTGCATTTACAAAAGA 992
| ||||||||||||||||| ||||| |||||||| |||||||||||| || | ||||||
Sbjct 840 TTGATTGCGAAAGCTAAAGGGTATTCTGATGTTTTATACCTTGATTGCGTTCATAAAAGA 899
Query 993 TATCTTGAGGAGGTCTCGTCTTGCAATATTTTCATCGTGAAGGACAATGTGATATCTACT 1052
||||| |||||||| || || || ||||||||||| |||||||| ||| | |||||||||
Sbjct 900 TATCTCGAGGAGGTTTCATCGTGTAATATTTTCATTGTGAAGGATAATATCATATCTACT 959
Query 1053 CCTGAAATAAAAGGAACCATTTTACCCGGTATTACTCGAAAAAGTATGATAGACGTGGCT 1112
|||||||| ||||||||||| || || || || || || || ||||| || || ||||||
Sbjct 960 CCTGAAATTAAAGGAACCATCTTGCCTGGAATAACCCGGAAGAGTATAATCGAAGTGGCT 1019
Query 1113 CG-AACACAAGGGTTTC-AGGTGGAGGAACGGAATGTGACAGTGGATGAATTGTTAGAAG 1170
|| | | ||| |||||| ||||||||||||| |||||||| || ||||||||| ||||||
Sbjct 1020 CGTAGC-CAA-GGTTTCAAGGTGGAGGAACGAAATGTGACCGTTGATGAATTGGTAGAAG 1077
Query 1171 CAGACGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCTGTTGGAAGCGTCACTT 1230
| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||| | ||||
Sbjct 1078 CGGACGAGGTTTTCTGCACAGGAACCGCCGTTGTTTTATCTCCGGTTGGAAGCATTACTT 1137
Query 1231 ACAAAGGCAAAAGAGTGT-CTTACGGAGAAGGTACCTTCGGAACTGTGTCGAAGCAACTC 1289
||||| || |||| || | | || ||||||| | ||| ||||| || ||||| ||||||
Sbjct 1138 ACAAAAGCCAAAG-GTTTTCCTATGGAGAAGATGGCTTTGGAACAGTCTCGAAACAACTC 1196
Query 1290 TACACCGTTC-TGA-CAAGCTTGCAGATGGGTCTGATTGAAGACAACATGAAATGGACTG 1347
||||| ||| | | | ||| |||| |||||||||| ||||| |||||||| |||||||
Sbjct 1197 TACAC--TTCCTTAACGAGCCTGCAAATGGGTCTGAGCGAAGATAACATGAACTGGACTG 1254
Query 1348 TG-AATCTTAGTTAAGCCAG 1366
| ||| | |||||| ||||
Sbjct 1255 TTCAAT-TGAGTTAAACCAG 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5