BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49690.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897842 jgi|Araly1|897842|Al_scaffold_0005_1808 1402 0.0
Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1 527 8e-149
> Ahg897842 jgi|Araly1|897842|Al_scaffold_0005_1808
Length=921
Score = 1402 bits (759), Expect = 0.0
Identities = 880/936 (94%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 207 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 60
Query 267 GAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGATCGCT 326
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 61 GAAGATGCAAAACTCAAATCTTACATTGAAAAGAGTGGAACAGGAGGCAATTGGATCGCT 120
Query 327 TTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCTTAAC 386
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TTGCCTCAGAAGATTGGTTTAAAGAGATGTGGGAAGAGTTGCAGGCTGAGGTGGCTTAAC 180
Query 387 TATCTTAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 446
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATCTGAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 240
Query 447 AGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 506
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCCTCTATCTTACTATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 300
Query 507 ACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACTCATTAACAAA 566
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 ACAGACAACGATATAAAAAACTATTGGAACACTAGGCTCAAGAAGAAACTTATTAACAAA 360
Query 567 CAACGCAAGGAGCTTCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 626
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAACGCAAGGAGCTCCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 420
Query 627 AGACAACACCAACAACAACAAATCCAAACTTCTTTTATGATGAGACAAGACCAAACAATG 686
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 AGACAACAACAACAACAACAAATCCAAACTTCTTTCATGATGAGACAAGACCAAACAATG 480
Query 687 TTCACATGGCCACTACATCATCATAATGTTCAAGTTCCAGCTCTTTTCATGAATCAAACC 746
||||||||||||||||| |||||| ||| ||| || ||| | ||||||||| || |||||
Sbjct 481 TTCACATGGCCACTACAACATCATCATGATCAGGTACCAACACTTTTCATGGATAAAACC 540
Query 747 AACTCGTTTTGCGACCAAGAAGATGTTAAGCCAGTGCTCATCAAGAACATGGTCAAGATC 806
||||||||||||||||||||||||| |||||||||| ||||||| | | ||||||
Sbjct 541 AACTCGTTTTGCGACCAAGAAGATGCTAAGCCAGTG---ATCAAGATC--G---AAGATC 592
Query 807 GAAGATCAAGAACTGGAGAAAACAAACCCTCATCATCATCAAGATTCAATGACAAACGCT 866
| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 593 -A-G-----GAACTGGAGAGAACAAACCCTCATCATCATCAAGATTCGATGACAAACGCT 645
Query 867 TTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCA 705
Query 927 GGCGAGGGTTTCTCCATGAACTCTATCTTGAGCGCCAACACAAACTCTCCATTGCTTAAT 986
|| |||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||
Sbjct 706 GGAGAGGGTTTCTCCATGACCTCGATCTTGAGCGCCAACGCAAACCCTCCATTGCTTAAC 765
Query 987 ACAAGTA--A-TGATAATCAGTGGTTCGGGAATTTCCAGGCCGAAACCGTAAACTTGTTC 1043
||||||| | |||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 766 ACAAGTATTAATGATCATCAGTGGTTCGGGAATTTCCAGGCCGAAACCATCAACTTGTTC 825
Query 1044 TCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACTATAAGTTGGGAAGACATAAGC 1103
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 826 TCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACCATAAGTTGGGAAGACATAAGC 885
Query 1104 TCTCTTGTTTATTCTGATTCAAAGCAAtttttttAA 1139
||||||||||||||||||||||||||||||| ||||
Sbjct 886 TCTCTTGTTTATTCTGATTCAAAGCAATTTTGTTAA 921
> Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1
Length=1325
Score = 527 bits (285), Expect = 8e-149
Identities = 390/439 (89%), Gaps = 13/439 (3%)
Strand=Plus/Plus
Query 203 AAGTATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCC 262
||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 14 AAG-ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCGCC 72
Query 263 TGAGGAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGAT 322
||| ||||| || ||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct 73 TGAAGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGGAGGCAATTGGAT 132
Query 323 CGCTTTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCT 382
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 133 CGCTTTGCCTCAAAAGATTGGTTTAAGGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGCT 192
Query 383 TAACTATCTT-AGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCA 441
|||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 193 CAACTAT-TTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAGAAGACAACATCA 251
Query 442 TTTGTAGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGG 501
|||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 252 TTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGG 311
Query 502 GACGAACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACT-CATT 560
|| |||| ||||||||||| ||||||||||||||||||||||| |||||||| || | |
Sbjct 312 GAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTC-TG 370
Query 561 AACAAACAACGCAAGGAGCTTC-AAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGAT 619
||||||||| | || ||| ||| ||||||| | ||| | ||||||||||| | ||||
Sbjct 371 AACAAACAAAGGAAAGAG-TTCCAAGAAGCGCGAATG-A--AGCAAGAGATG--G-TGAT 423
Query 620 GATGAAGAGACAACACCAA 638
|||||| |||||||| |||
Sbjct 424 GATGAAAAGACAACAACAA 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5