BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49690.1 Length=1240 Score E Sequences producing significant alignments: (Bits) Value Ahg897842 jgi|Araly1|897842|Al_scaffold_0005_1808 1402 0.0 Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1 527 8e-149 > Ahg897842 jgi|Araly1|897842|Al_scaffold_0005_1808 Length=921 Score = 1402 bits (759), Expect = 0.0 Identities = 880/936 (94%), Gaps = 18/936 (2%) Strand=Plus/Plus Query 207 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 60 Query 267 GAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGATCGCT 326 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 61 GAAGATGCAAAACTCAAATCTTACATTGAAAAGAGTGGAACAGGAGGCAATTGGATCGCT 120 Query 327 TTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCTTAAC 386 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 121 TTGCCTCAGAAGATTGGTTTAAAGAGATGTGGGAAGAGTTGCAGGCTGAGGTGGCTTAAC 180 Query 387 TATCTTAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 446 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TATCTGAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 240 Query 447 AGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 506 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGCCTCTATCTTACTATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 300 Query 507 ACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACTCATTAACAAA 566 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 301 ACAGACAACGATATAAAAAACTATTGGAACACTAGGCTCAAGAAGAAACTTATTAACAAA 360 Query 567 CAACGCAAGGAGCTTCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 626 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CAACGCAAGGAGCTCCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 420 Query 627 AGACAACACCAACAACAACAAATCCAAACTTCTTTTATGATGAGACAAGACCAAACAATG 686 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 AGACAACAACAACAACAACAAATCCAAACTTCTTTCATGATGAGACAAGACCAAACAATG 480 Query 687 TTCACATGGCCACTACATCATCATAATGTTCAAGTTCCAGCTCTTTTCATGAATCAAACC 746 ||||||||||||||||| |||||| ||| ||| || ||| | ||||||||| || ||||| Sbjct 481 TTCACATGGCCACTACAACATCATCATGATCAGGTACCAACACTTTTCATGGATAAAACC 540 Query 747 AACTCGTTTTGCGACCAAGAAGATGTTAAGCCAGTGCTCATCAAGAACATGGTCAAGATC 806 ||||||||||||||||||||||||| |||||||||| ||||||| | | |||||| Sbjct 541 AACTCGTTTTGCGACCAAGAAGATGCTAAGCCAGTG---ATCAAGATC--G---AAGATC 592 Query 807 GAAGATCAAGAACTGGAGAAAACAAACCCTCATCATCATCAAGATTCAATGACAAACGCT 866 | | |||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 593 -A-G-----GAACTGGAGAGAACAAACCCTCATCATCATCAAGATTCGATGACAAACGCT 645 Query 867 TTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCA 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 TTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCA 705 Query 927 GGCGAGGGTTTCTCCATGAACTCTATCTTGAGCGCCAACACAAACTCTCCATTGCTTAAT 986 || |||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||| Sbjct 706 GGAGAGGGTTTCTCCATGACCTCGATCTTGAGCGCCAACGCAAACCCTCCATTGCTTAAC 765 Query 987 ACAAGTA--A-TGATAATCAGTGGTTCGGGAATTTCCAGGCCGAAACCGTAAACTTGTTC 1043 ||||||| | |||| |||||||||||||||||||||||||||||||| | ||||||||| Sbjct 766 ACAAGTATTAATGATCATCAGTGGTTCGGGAATTTCCAGGCCGAAACCATCAACTTGTTC 825 Query 1044 TCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACTATAAGTTGGGAAGACATAAGC 1103 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 826 TCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACCATAAGTTGGGAAGACATAAGC 885 Query 1104 TCTCTTGTTTATTCTGATTCAAAGCAAtttttttAA 1139 ||||||||||||||||||||||||||||||| |||| Sbjct 886 TCTCTTGTTTATTCTGATTCAAAGCAATTTTGTTAA 921 > Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1 Length=1325 Score = 527 bits (285), Expect = 8e-149 Identities = 390/439 (89%), Gaps = 13/439 (3%) Strand=Plus/Plus Query 203 AAGTATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCC 262 ||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct 14 AAG-ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCGCC 72 Query 263 TGAGGAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGAT 322 ||| ||||| || ||||||||| |||||| || ||||||||||| |||||||||||||| Sbjct 73 TGAAGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGGAGGCAATTGGAT 132 Query 323 CGCTTTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCT 382 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 133 CGCTTTGCCTCAAAAGATTGGTTTAAGGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGCT 192 Query 383 TAACTATCTT-AGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCA 441 |||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 193 CAACTAT-TTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAGAAGACAACATCA 251 Query 442 TTTGTAGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGG 501 |||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 252 TTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGG 311 Query 502 GACGAACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACT-CATT 560 || |||| ||||||||||| ||||||||||||||||||||||| |||||||| || | | Sbjct 312 GAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTC-TG 370 Query 561 AACAAACAACGCAAGGAGCTTC-AAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGAT 619 ||||||||| | || ||| ||| ||||||| | ||| | ||||||||||| | |||| Sbjct 371 AACAAACAAAGGAAAGAG-TTCCAAGAAGCGCGAATG-A--AGCAAGAGATG--G-TGAT 423 Query 620 GATGAAGAGACAACACCAA 638 |||||| |||||||| ||| Sbjct 424 GATGAAAAGACAACAACAA 442 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46319344155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5