BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49700.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348080 jgi|Araly1|348080|fgenesh1_pg.C_scaffold_5001472 2289 0.0
Ahg332796 jgi|Araly1|332796|fgenesh1_pm.C_scaffold_8002139 1408 0.0
Ahg899116 jgi|Araly1|899116|Al_scaffold_0005_3082 56.5 5e-07
> Ahg348080 jgi|Araly1|348080|fgenesh1_pg.C_scaffold_5001472
Length=1413
Score = 2289 bits (1239), Expect = 0.0
Identities = 1356/1414 (96%), Gaps = 2/1414 (0%)
Strand=Plus/Plus
Query 1 ATGAAACAACTGTCGAGAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACAACTGTCGACAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
Query 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACGACGAAATCAAGAACCCTAATGGGATT 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACAACGAAATCAAGAACCCTAATGGGATT 120
Query 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
Query 181 AAGAATCCGGACGCAGCCGGACTAAAAAAGGACGGCCAATCCATTTTCAAAGAGCTTGCT 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 AAGAATCCGGACGCAGCCGGACTCAAGAAGGACGGCCAATCCATTTTCAAAGAGCTTGCT 240
Query 241 CTCTTTCAAGACTATCATGGCCTACCCGAATTCAAGAAAGCTTTGGCAGAGTTTATGGAG 300
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 241 CTCTTCCAAGACTATCATGGCCTACCTGAATTCAAGAAAGCTTTGGCTGAGTTTATGGAG 300
Query 301 GAAATCAGAGGAAATAGAGTAACATTTGATCCAAGCAAGATTGTCCTAGCTGCTGGTTCA 360
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAAATAAGAGGAAATAGAGTAACATTTGATCCTAGCAAGATTGTCCTAGCTGCTGGTTCA 360
Query 361 ACATCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTTA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCTCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTTA 420
Query 421 CCAACTCCTTACTATCCAGGATTCGATAGAGACTTGAAATGGAGAACGGGAGCAGAGATC 480
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 421 CCAACTCCTTACTACCCAGGATTTGATAGAGATTTGAAATGGAGAACGGGAGCAGAGATC 480
Query 481 GTACCTATTCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAACAA 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTACCTATCCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAACAA 540
Query 541 GCTTATCAACAAGCTCAAAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAACCCG 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTATCAGCAAGCTCAAAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAACCCG 600
Query 601 TCTAACCCTCTTGGCACAATGTTGACCAGAAGAGAACTTAACCTTCTCGTTGACTTCATT 660
||||||||||||||||||||||||||| |||| ||| ||||||| || ||||||||||||
Sbjct 601 TCTAACCCTCTTGGCACAATGTTGACCCGAAGGGAAATTAACCTCCTAGTTGACTTCATT 660
Query 661 ACTTCCAAAAACATTCATCTCATAAGCGACGAGATCTATTCAGGTACCGTTTTTGGGTTT 720
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 661 TCTTCCAAAAACATTCATCTCATAAGCGACGAGATATATTCAGGTACTGTTTTTGGGTTT 720
Query 721 GAACAGTTTGTAAGTGTCATGGATGTCTTAAAAGACAAGAACCTCGAGAACAGCGAAGTC 780
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 721 GAACAGTTTGTTAGTGTCATGGATGTCTTAAAAGACAAGAATCTTGAGAACAGCGAAGTC 780
Query 781 TCCAAACGAGTTCATATTGTTTATAGTCTTTCCAAAGATCTCGGTTTACCAGGTTTTCGC 840
||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TCCAAACGAGTTCATGTCGTTTATAGTCTTTCCAAAGATCTCGGTTTACCGGGTTTTCGC 840
Query 841 GTAGGAGCAATTTACTCCAACGACGAAATGGTTGTTTCCGCTGCAACAAAAATGTCAAGT 900
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 GTTGGAGCAATATACTCCAACGACGAAATGGTTGTTTCCGCTGCCACAAAAATGTCAAGT 900
Query 901 TTCGGTCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTGCTTTCAGACAAGAAG 960
||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 901 TTCGGCCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTACTTTCCGACAAAAAG 960
Query 961 TTCACAAGTACATACCTCGACGAAAACCAGAAAAGACTCAAGATTCGTCAGAAGAAACTC 1020
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 TTCACAAGTACATACCTCAACGAAAACCAGAAAAGACTCAAGATTCGTCAGAAGCAACTC 1020
Query 1021 GTGTCCGGTCTAGAAGCTGCAGGGATTACTTGTCTTAAAAGCAACGCTGGTTTGTTCTGT 1080
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1021 GTGTCCGGTCTAGAAGCTGCAGGGGTTACTTGTCTTAAAAGCAACGCTGGTTTATTCTGT 1080
Query 1081 TGGGTTGACATGAGACATCTTTTGGACACAAACACATTCGAAGCAGAACTTGAGCTATGG 1140
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 1081 TGGGTTGACATGAGACATCTCTTGGACACAAACACATTCGAAGCAGAGCTTCAGCTATGG 1140
Query 1141 AAGAAGATTGTATATGACGTCAAGCTGAATATTTCACCTGGTTCATCGTGCCATTGTACT 1200
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1141 AAGAAGATTGTATATGAAGTCAAGCTAAATATTTCACCCGGTTCATCGTGCCATTGTACT 1200
Query 1201 GAACCGGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGTGAAGATACGCTTGATTTGGCG 1260
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1201 GAACCAGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGCGAAGATACGCTTCATTTGGCG 1260
Query 1261 ATGAAGAGGCTCAAAGAGTACGTAGAGTCAACAGATAGTAGAAG-AGTGATTTCAAAAAG 1319
||||||||| ||||| ||||||||||||| |||||||||| ||| | |||||||||||||
Sbjct 1261 ATGAAGAGGTTCAAACAGTACGTAGAGTCTACAGATAGTAAAAGGA-TGATTTCAAAAAG 1319
Query 1320 CAGTCATGATAGGATCAAGAGTTTGAGGAAGAGAACTGTCTCCAACTGGGTTTTCCGGGT 1379
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1320 CAGTCATGAAAGGATCAAGAGTTTGAGGAAGAGAACTGTCTCTAACTGGGTTTTCCGGGT 1379
Query 1380 TTCATGGACCGACCGTGTACCTGATGAACGATGA 1413
||||||||||||||| ||||||||||||||||||
Sbjct 1380 TTCATGGACCGACCGCGTACCTGATGAACGATGA 1413
> Ahg332796 jgi|Araly1|332796|fgenesh1_pm.C_scaffold_8002139
Length=1413
Score = 1408 bits (762), Expect = 0.0
Identities = 1208/1425 (85%), Gaps = 24/1425 (2%)
Strand=Plus/Plus
Query 1 ATGAAACAACTGTCGAGAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
|||||||| || || | ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1 ATGAAACAGCTTTCAACAAAAGTGACAAGCAATGGTCATGGACAAGACTCATCCTACTTC 60
Query 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACGACGAAATCAAGAACCCTAATGGGATT 120
|||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 61 TTGGGATGGGAAGAGTACGAGAAGAATCCTTACGATGAGATCAAGAACCCTAATGGGATG 120
Query 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
|| || ||||||||||||||||| ||||||||||| ||||| || ||| ||||||||| |
Sbjct 121 ATCCAGATGGGTCTTGCCGAAAACCAGCTATGTTTCGATCTAATCGAGTCATGGTTAGTT 180
Query 181 AAGAATCCGGACGCAGCCGGACTAAAAAAGG-ACGGCCAATCCATTTTCAAAGAGCTTGC 239
||||| || || ||||| | || || ||| |||| ||||||||||||| |||||||||
Sbjct 181 AAGAACCCAGATGCAGCTAGTCT-CAAGAGGAACGGTCAATCCATTTTCAGAGAGCTTGC 239
Query 240 TCTCTTTCAAGACTATCATGGCCTACCCGAATTCAAGAAAGCTTTGGCAGAGTTTATGGA 299
|||||||||||||||||||||| | || |||||||| |||||| |||| |||||||||||
Sbjct 240 TCTCTTTCAAGACTATCATGGCATGCCTGAATTCAAAAAAGCTATGGCTGAGTTTATGGA 299
Query 300 GGAAATCAGAGGAAATAGAGTAACATTTGATCCAAGCAAGATTGTCCTAGCTGCTGGTTC 359
|| || |||||||| | || || || ||||||| || ||||| |||| ||||||||
Sbjct 300 AGAGATAAGAGGAAACCGTGTCACGTTCGATCCAAAAAATATTGTTTTAGCCGCTGGTTC 359
Query 360 AACATCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTT 419
|| ||||| ||||| ||||||||||||||||| || || || || || |||||||||||
Sbjct 360 GACCTCTGCGAACGAGACTCTCATGTTTTGTCTTGCAGAGCCTGGTGATGCTTTCCTTTT 419
Query 420 ACCAACTCCTTACTATCCAGGATTCGATAGAGA-CTTGAAATGGAGAACGGGAGCAGAGA 478
|| |||||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||
Sbjct 420 GCCTACTCCTTACTATCCTGGATTTGATAGAGATCTT-AAATGGAGAACCGGAGCAGAGA 478
Query 479 TCGTACCTATTCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAAC 538
| ||||| ||||| ||||||||||||||||| |||||||| || || |||||||| ||||
Sbjct 479 TAGTACCCATTCACTGCTCAAGCTCTAATGGCTTCCAAATCACGGAATCAGCTCTGCAAC 538
Query 539 AAGCTTATCAACAAGCTC-A-AAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAA 596
||||||| |||||||| | | ||| ||||||||||| ||||||||||||||||| || ||
Sbjct 539 AAGCTTACCAACAAGC-CGAGAAA-CTTGATCTTAAAGTCAAAGGAGTTCTTGTCACGAA 596
Query 597 CCCGTCTAACCCTCTTGGCACAATGTTGACCAGAAGAGAACTTAACCTTCTCGTTGACTT 656
|| |||||||| |||||||| |||||||||| | || ||||||||||||||||||||
Sbjct 597 TCCATCTAACCCACTTGGCACTGCGTTGACCAGACGTGAGCTTAACCTTCTCGTTGACTT 656
Query 657 CATTACTTCCAAAAACATTCATCTCATAAGCGACGAGATCTATTCAGGTACCGTTTTTGG 716
||| |||||||| |||||||||||||| |||||||||||||||||||| || | || ||
Sbjct 657 CATCACTTCCAAGAACATTCATCTCATTAGCGACGAGATCTATTCAGGCACTATGTTCGG 716
Query 717 GTTTGAACAGTTTGTAAGTGTCATGGATGTCTTAAAAGACAAGAACCTCGAGAACAGCGA 776
|||||||||||| |||| || ||||||||||| ||||||||||| ||||| |||| |||
Sbjct 717 GTTTGAACAGTTCATAAGCGTAATGGATGTCTTGAAAGACAAGAAACTCGAAAACACCGA 776
Query 777 AGTCTCCAAACGAGTTCATATTGTTTATAGTCTTTCCAAAGATCTCGGT-TTACCAGGTT 835
|| || |||||||| || | |||||||| |||||||||||| | || || || ||||
Sbjct 777 GGTTTCAAAACGAGTCCACGTCGTTTATAGCCTTTCCAAAGATTTGGGACTT-CCTGGTT 835
Query 836 TTCGCGTAGGAGCAATTTACTCCAACGACGAAATGGTTGTTTCCGCTGCAACAAAAATGT 895
| || || ||||| || ||||||||||| |||||| | ||||| || || ||||||||||
Sbjct 836 TCCGTGTGGGAGCGATCTACTCCAACGAAGAAATGATCGTTTCGGCAGCTACAAAAATGT 895
Query 896 CAAGTTTCGGTCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTGCTTTCAGACA 955
||||||| ||||| || |||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 896 CAAGTTTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTCTGCATTGCTCTCCGACA 955
Query 956 AGAAGTTCACAAGTACA-TACCTCGACGAAAACCAGAAAAGACTCAAGATTC-GTCAGAA 1013
||||||||||||| || |||||||| || || |||||| |||||||| | | | ||||
Sbjct 956 AGAAGTTCACAAGC-CAATACCTCGAAGAGAATCAGAAACGACTCAAG-TCCAGACAGA- 1012
Query 1014 GAAA-CTCGTGTCCGGTCTAGAAG-CTGCAGGGATTACTTGTCTTAAAAGCAACGCTGGT 1071
|| |||||||| ||||| || | | || ||||||||||| || | ||||||||| |||
Sbjct 1013 GACGTCTCGTGTCTGGTCTTGA-GTCAGCGGGGATTACTTGCCTGAGAAGCAACGCGGGT 1071
Query 1072 TTGTTCTGTTGGGTTGACATGAGACATCTTTTGGACACAAACACATTCGAAGCAGAACTT 1131
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1072 TTGTTCTGTTGGGTCGACATGAGACACCTTTTGGACACAAACACATTTGAAGCAGAGCTT 1131
Query 1132 GAGCTATGGAAGAAGATTGTATATGACGTCAAGCTGAATATTTCACCTGGTTCATCGTGC 1191
|| || ||||| |||||||| || |||| || || || || ||||| ||||| || ||
Sbjct 1132 GATCTCTGGAAAAAGATTGTTTACAACGTGAAACTAAACATCTCACCCGGTTCGTCATGT 1191
Query 1192 CATTGTACTGAACCGGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGTGAAGATACGCTT 1251
|| || || ||||||||||||||||||||||||||||| || ||||| || ||||| ||
Sbjct 1192 CACTGCACCGAACCGGGTTGGTTTAGGGTTTGTTTCGCTAATATGAGCGAGGATACACTC 1251
Query 1252 GATTTGGCGATGAAGAGGCTCAAAGAGTA-CGTAGAGTCAACAGA-TAGTAGAAGAGTGA 1309
|||||||| |||||||||||||| | | ||| || || ||||| | || ||||| |||
Sbjct 1252 GATTTGGCCTTGAAGAGGCTCAAA-ACTTTCGTCGAATCCACAGACT-GTGGAAGAATGA 1309
Query 1310 TTTCAAAAAGCAGTCATGATAGGATCAAGAGTTTGAGGAAGA-GAACTGTCTCCAACTGG 1368
|||||| |||||| ||||| ||| |||||||||||||||||| || | ||||| ||||||
Sbjct 1310 TTTCAAGAAGCAGCCATGAAAGGCTCAAGAGTTTGAGGAAGAAGA-CAGTCTCTAACTGG 1368
Query 1369 GTTTTCCGGGTTTCATGGACCGACCGTGTACCTGATGAACGATGA 1413
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1369 GTTTTCCGGGTTTCATGGACCGATCGTGTACCTGATGAACGATGA 1413
> Ahg899116 jgi|Araly1|899116|Al_scaffold_0005_3082
Length=1458
Score = 56.5 bits (30), Expect = 5e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 119 TTATTCAAATGGGTCTTGCCGAAAATCAGCTATGTT 154
|||||||||||||||||||||||||||| || ||||
Sbjct 122 TTATTCAAATGGGTCTTGCCGAAAATCAACTTTGTT 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5