BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49720.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485334 jgi|Araly1|485334|fgenesh2_kg.5__1326__AT3G49720.1 1827 0.0
Ahg332797 jgi|Araly1|332797|fgenesh1_pm.C_scaffold_8002140 749 0.0
Ahg937795 jgi|Araly1|937795|scaffold_501986.1 52.8 5e-06
> Ahg485334 jgi|Araly1|485334|fgenesh2_kg.5__1326__AT3G49720.1
Length=1129
Score = 1827 bits (989), Expect = 0.0
Identities = 1088/1135 (96%), Gaps = 9/1135 (1%)
Strand=Plus/Plus
Query 5 ATATTAACACTTCGAAGCTTCTTCTTC-CTTT-AGTAAATTCAAGTGTGAGGTGTGTTTA 62
||||||||||||||||||||||||||| ||| |||||||||||||| || | |||||||
Sbjct 1 ATATTAACACTTCGAAGCTTCTTCTTCATTTTAAGTAAATTCAAGTG-GA-G-GTGTTTA 57
Query 63 TTGATAAAGTGCTCATTTTCTCGGATCTCAGATCTTAGATCCAAACCCTCATTATTTCAT 122
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 58 TTCATAAAGTGCTCATTTTCTCGGATCTCAGATCTTAGATCCAAACCCTCCTCGTTTCAT 117
Query 123 TGATCCAAGATCTAATAGCTTGAGCTTGCT-GGGATTTTAGTTATGGCGAGACGGCAAGT 181
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 118 TGATCCAAGATCTAATAGCTTGAGCTTG-TGGGGATTTTAGTTATGGCGAGACGGCAAGT 176
Query 182 AGGTTCAACAAGACGTGTTGGCGATGGTGGAAGCTTCCCTTTTGCAGGAGCTTTACACTC 241
|||||||||||||||||| || ||||||||||||||||| |||||||||||||| || ||
Sbjct 177 AGGTTCAACAAGACGTGTAGGAGATGGTGGAAGCTTCCCGTTTGCAGGAGCTTTGCATTC 236
Query 242 AAAGTCTCGATCTTCTCCACTACTATCTATTTGCCTTGTTCTTGTGGGGGCTTGTCTTCT 301
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||
Sbjct 237 AAAGTCTCGATCTTCTCCACTACTCTCTATTTGCCTTGTCCTTTTGGGGGCTTGCCTTCT 296
Query 302 CATTGGTTATGCTTACAGTGGTCCAGGTATATTTAAAAGTATCAAAGAAGTTAGCAAAGT 361
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 297 TATTGGTTATGCTTACAGTGGTCCAGGTATCTTTAAAAGTATCAAAGAAGTCAGCAAAGT 356
Query 362 TACAGGTGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTACTTAAGAAGGC 421
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 TACAGGTGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTTCTTAAGAAGGC 416
Query 422 TTATGGAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTATGGAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTC 476
Query 482 CAGTCTATTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGATATTGAGGA 541
||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 477 CAGTCTACTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGACATCGAGGA 536
Query 542 TGCAGATTCTCACTGCAAGAGTTTTGTGAGCAAAGGTCTTGTACGTGTTGCTGATATCAA 601
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 537 TGCAGATTCTCACTGCAAGAGTTTTGTGAGCAAAGGCCTTGTACGTGTGGCTGATATCAA 596
Query 602 GTTTCCTCTGCCCTACCGGGCAAAATCCTTCTCTCTTGTGATTGTGTCAGATGCTCTGGA 661
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 GTTCCCTCTGCCCTACCGGGCAAAATCTTTCTCTCTTGTGATTGTGTCAGATGCTCTGGA 656
Query 662 TTATCTCTCACCCAAGTACCTGAACAAGACCGTTCCTGAACTCGCAAGGGTGGCTTCAGA 721
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 657 TTATCTCTCACCCAAGTACCTGAACAAGACTGTGCCTGAACTCGCAAGGGTGGCTTCAGA 716
Query 722 CGGTGTGGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAGCTAAAGTTGCTGAACTCTC 781
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 CGGTGTTGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAGCTAAAGTTGCTGAACTGTC 776
Query 782 TAAATTCGGCCGACCCGCTAAAATGCGTAGCGCATCGTGGTGGAACCGCTTTTTCGTCCA 841
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 TAAATTCGGCCGACCCGCTAAAATGCGTAGTGCATCGTGGTGGAACCGCTTTTTCGTCCA 836
Query 842 GACAAACTTAGAAGAAAACGATGCACCAAGCAAGAAGTTCGAACAGGCTGTTTCCAAAGG 901
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 837 GACAAACTTAGAAGAAAACGAAGCACCAAGCAAGAAGTTCGATCAGGCTGTTTCCAAAGG 896
Query 902 ATTATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTAACCAGCCACCAC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTAACCAGCCACCAC 956
Query 962 CAAAGCCTACTGGTTCCACACCAAAGCATATTTACACGTAGAGCCGCACGCGaaaaaaaa 1021
||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 CAA-GCCTATTGGGTCCACACCAAAGCATATTTACACGTAGAGCCGCACGAAAAAAAAAA 1015
Query 1022 aaaTAGCGTAATCGATATTTCTCCTTGTATTTTGTAACAGGTCAGTTTTTATCCTTCAAT 1081
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAATAGCGTAATCGATATT-CTCCTTGTATTTTGTAACAGGTCAGTTTTTATCCTTCAAT 1074
Query 1082 GTTGTATCCGCCAACACAATTTTTCCTATTCAATTAAATCATAATTATTATCACC 1136
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTGTATCGGTCAACACAATTTTTCCTATTCAATTAAATCATAATTATTATCACC 1129
> Ahg332797 jgi|Araly1|332797|fgenesh1_pm.C_scaffold_8002140
Length=777
Score = 749 bits (405), Expect = 0.0
Identities = 653/771 (85%), Gaps = 24/771 (3%)
Strand=Plus/Plus
Query 191 AAGACGTGTTGGCGATGGTGGAAGCTTCCCTTTTGCAGGAGCTTTACACTC-AAAGTCTC 249
||| ||||| || ||| ||||||||||||| |||| ||||||||| || || ||| || |
Sbjct 18 AAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCTTTGCATTCGAAA-TCGC 76
Query 250 GATCTTCTCCACTACTATCTATTTGCCTTGTTCTTGTGGGGGCTTGTCTTCTCATTGGTT 309
| || ||||| | ||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct 77 GTTCGTCTCCTTTGTTATCTGTTTGCCTTGTTCTCGTGGGAGCATGCCTTCTCATTGGTT 136
Query 310 ATGCTTACAGTGGTCCAGGTATATTTAAAAGTATCAA-AGAAGTTAGCAAAGTT-ACAGG 367
|||||||||||||||||||||| || |||||||| || |||||| ||||| | | |||||
Sbjct 137 ATGCTTACAGTGGTCCAGGTATGTTCAAAAGTAT-AAGAGAAGTCAGCAA-GATCACAGG 194
Query 368 TGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTACTTAAGAAG-GCTTATG 426
|||||||||||||||||||||||| || |||||||||||||| ||||||| | || ||||
Sbjct 195 TGACTATTCTTGCACAGCAGAAGTTCATAGAGCCATTCCTGTTCTTAAGA-GTGCGTATG 253
Query 427 GAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTCCAGTC 486
|||| |||||||||||||| |||| ||||| ||||| ||||||||||| || || ||||
Sbjct 254 GAGACAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCAGTCGTCTCGAGTC 313
Query 487 TATTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGATATTGAGGATGCAG 546
| ||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 314 TGTTGAATGAAGAAGAGACGGAAGCATGGGGTGTTGAACCATATGATGTGGAGGATGCAG 373
Query 547 ATTCTCACTGCAAGAGT-TTTGTG-AGCAAAGGTCTTGTACGTGTTGCTGATATCAAGTT 604
||||| ||||||| ||| ||| || | |||||| ||||||||||| ||||| ||||| ||
Sbjct 374 ATTCTAACTGCAAAAGTCTTT-TGCA-CAAAGGCCTTGTACGTGTGGCTGACATCAAATT 431
Query 605 TCCTCTGCCCTACCGGGCAAAATCCTTCTCTCTTGTGATTGTGTCAGATGC-TCTGGATT 663
|||||||| |||||| |||| || || ||||||||||| || ||||| || | ||||||
Sbjct 432 CCCTCTGCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGACGCAT-TGGATT 490
Query 664 ATCTCTCACCCAAGTACCTGAACAAGACCGTTCCTGAACTCGCAAGGGTGGCTTCAGACG 723
| ||||| |||| |||||||||||| ||||| |||||||| ||| |||| |||||||| |
Sbjct 491 ACCTCTCGCCCAGGTACCTGAACAAAACCGTGCCTGAACTTGCACGGGTCGCTTCAGATG 550
Query 724 GTGTGGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAG-CTAAAGTTGCTGAACTCTCT 782
|||| ||||||||||||||| ||||||||| || | || |||||| ||| ||| | ||
Sbjct 551 GTGTCGTTCTTTTTGCAGGTAACCCTGGTCAACAAA-AGGCTAAAGGTGCGGAATTGTCG 609
Query 783 AAATTCGGCCGACCCGCTAAAATGCGTAGCGCATCGTGGTGGAACCGCTTT-TTCGTC-C 840
||||| || ||||| ||||||||||||||| | |||||||||| ||| ||| ||| || |
Sbjct 610 AAATTTGGACGACCGGCTAAAATGCGTAGCTCGTCGTGGTGGATCCG-TTTCTTC-TCAC 667
Query 841 AGACAAACTTAGAAGAAAACGATGCACCAAGCAAGAAGTTCGAACAGGCTGTTTCCAA-A 899
|||| |||||||| |||||||| ||| |||||||||| |||||||| || | |||||| |
Sbjct 668 AGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCTTCCAAGA 727
Query 900 GGATT-ATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTA 949
| || |||||||| ||| || ||||| |||||||||||||||||||||||
Sbjct 728 G--TTCATACAAACGAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTA 776
> Ahg937795 jgi|Araly1|937795|scaffold_501986.1
Length=2207
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1112 CAATTAAATCATAATTATTATCACCAAT 1139
||||||||||||||||||||||||||||
Sbjct 2207 CAATTAAATCATAATTATTATCACCAAT 2180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5