BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49740.1
Length=2307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485336 jgi|Araly1|485336|fgenesh2_kg.5__1328__AT3G49740.1 3062 0.0
> Ahg485336 jgi|Araly1|485336|fgenesh2_kg.5__1328__AT3G49740.1
Length=2196
Score = 3062 bits (1658), Expect = 0.0
Identities = 2020/2195 (92%), Gaps = 24/2195 (1%)
Strand=Plus/Plus
Query 32 TATCAGCCATA-GCAGAAAACTCTACCACGTTGCTCAATTTAAACCGGAGACTAACGGGT 90
||||||||||| || |||| ||| || ||||||||||||||||||||||||||||||| |
Sbjct 14 TATCAGCCATAGGC-GAAAGCTCGACTACGTTGCTCAATTTAAACCGGAGACTAACGGCT 72
Query 91 CTCACTCGTTCCGGCGAGAACAGAAACGCTCTCAAGCTCTTCGCCGATGTTCACCGTTGC 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCACTCGTTCCGGCGAGAACAGAAACGCTCTCAAGCTCTTCGCCGATGTTCACCGTTGT 132
Query 151 ACAACTCTGAGACCAGACCAGTACAGTGTCTCGTTAGCTATTACTACAGCTAGGCACCTC 210
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 133 ATAACTCTGAGACCAGACCAGTACAGTGTCTCGTTAGCTATTACTGCAGCTGGGCACCTC 192
Query 211 CGTGATACTATCTTTGGTGGTCAGGTTCATTGCTATGCGATTCGCTCTGGTTTATTGTGT 270
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CGTGATACCATCTTCGGTGGTCAGGTTCATTGCTATGCGATTCGCTCTGGTTTATTGTGT 252
Query 271 CACTCTCACGTTTCCAATACGCTTCTTTCGCTATATGAGAGATTAGGGAACTTAGCTTCG 330
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 253 CACTCTCACGTCTCCAATACGCTTCTCTCGCTATACGCGAGATTAGGGAACTTAGCTTCG 312
Query 331 TTGAAGAAGAAGTTCGACGAGATTGA-TGAACCTGATGTTTATTCATGGACGACGCTTCT 389
||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||| |
Sbjct 313 TTGAAGAGGAAGTTCGAAGAGATT-ATTGAACCTGATGTTTATTCATGGACGACGCTTTT 371
Query 390 GAGTGCAAGTTTTAAGCTTGGTGATATAGAGTATGCCTTTGAGGTGTTTGATAAAATGCC 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GAGTGCAAGTTTTAAGCTTGGTGATATAGAGTATGCCTTTGAGGTGTTTGATAAAATGCC 431
Query 450 TGAGAGAGATGATGTTGCGATTTGGAATGCTATGATTACTGGTTGCAAAGAGAGTGGGTA 509
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 432 TGAGAGGGATGATGTTGCGGTTTGGAATGCTATGATCACTGGTTGCAAAGAGAGTGGGTA 491
Query 510 TCACGAAACGAGTGTTGAGTTGTTTCGAGAAATGCATAAGCTTGGTGTTCGACATGATAA 569
||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 492 TCAAGGAACGAGTATTGAGTTGTTTCGAGAAATGCACAAGCTTGGTGTTCGACATGATAA 551
Query 570 GTTTGGGTTTGCTACTATTTTGAGTATGTGTGACTATGGTTCTTTGGATTTTGGTAAGCA 629
|||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 552 GTTTGGCTTTGCTACTGTTTTGAGTATGTGTTACTATGGTTCTTTGGATTTTGGTAAGCA 611
Query 630 GGTGCATTCGCTGGTTATAAAAGCTGGATTTTTTATTGCTTCATCTGTTGTGAATGCACT 689
|||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 612 GGTGCATTCGCTAGTTATAAAAGCTGGATTTTTTGTTGCATCATCTGTTGTGAATGCACT 671
Query 690 AATTACAATGTATTTCAATTGCCAAGTGGTTGTTGATGCTTGTCTGGTGTTTGAAGAAAC 749
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 672 AATTACAATGTATTTCAATTGCCAAGTGGTTGTTGATGCTCGTCTGGTGTTTGAAGAAGC 731
Query 750 TGATGTTGCTGTTCGTGATCAGGTTACTTTTAATGTGGTTATTGATGGTTTGGCTGGTTT 809
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 732 TGATGTTGCTGTTCGTGATCAGGTCACTTTTAATGTGGTTATTGATGGTTTGGCTGGTTT 791
Query 810 CAAAAGAGACGAGTCTTTGTTGGTGTTTAGAAAAATGCTAGAAGCTAGTCTTAGACCAAC 869
||||||||| ||||||||||||||||||||| ||||| | |||||| |||||||||||||
Sbjct 792 CAAAAGAGAGGAGTCTTTGTTGGTGTTTAGACAAATGGTCGAAGCTGGTCTTAGACCAAC 851
Query 870 CGATTTGACCTTTGTTAGTGTTATGGGTTCATGTTCATGTGCGGCTATGGGACACCAAGT 929
||| ||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||
Sbjct 852 TGATCTGACCTTTGTTAGCGTTATGAGTTCATGTTCATGTGAGACTATGGGACACCAAGT 911
Query 930 ACATGGACTAGCCATCAAGACAGGTTATGA-GAAGTATACTTTGGTTAGCAATGCCACTA 988
|||||||||||||||||||||||| ||||| || |||||||||||| |||||| ||||||
Sbjct 912 ACATGGACTAGCCATCAAGACAGGGTATGAAGA-GTATACTTTGGTCAGCAATTCCACTA 970
Query 989 TGACAATGTATTCTTCTTTTGAAGA-TTTTGGTGCGGCTCATAAGGTTTTTGAGTCATTG 1047
|||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||
Sbjct 971 TGACAATGTATTCTTCTTTTGA-GAATTTTGGTGCGGCTCTTAAGGTTTTCGAGTCATTG 1029
Query 1048 GAAGAGAAAGACTTGGTTACTTGGAACACAATGATCTCAAGTTATAACCAAGCGAAATTG 1107
||||||||||| ||| |||||||||| |||||||| || |||||||||||||||| |||
Sbjct 1030 GAAGAGAAAGATTTGATTACTTGGAATACAATGATTTCTGGTTATAACCAAGCGAACTTG 1089
Query 1108 GG-CAAGTCTGCGATGTCGGTATACAAGAGAATGCACATAATAGGAGTTAAACCGGATGA 1166
|| || ||||||| ||| | | |||||| ||||||| |||||||||||||||||||||
Sbjct 1090 GGGCA-GTCTGCGTTGTTGTTGTACAAGCGAATGCATGGAATAGGAGTTAAACCGGATGA 1148
Query 1167 GTTTACTTTTGGAAGTCTTTTAGCAACCTCTCTGGATTTAGATGTCCTGGAGATGGTTCA 1226
||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1149 GTTTACTTTCGGAAGTCTTTTAGCAAGCTCTCTGGATTTGGATGCCCTGGAGATGGTTCA 1208
Query 1227 AGCGTGTATAATCAAGTTTGGGCTTAGTTCAAAGATTGAAATTTCCAATGCGTTGATATC 1286
||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1209 AGCGTGTGTAATCAAATTCGGGCTTAGTTCAAAGATCGAAATTTCGAATGCACTGATATC 1268
Query 1287 TGCCTACTCGAAGAATGGACAGATAGAAAAAG-CTGACCTATTATTTGAAAGATCTCTGA 1345
|||||| |||||| | ||| ||||| | |||| | |||||| |||| ||||| || | ||
Sbjct 1269 TGCCTATTCGAAGCACGGAAAGATA-ACAAAGGCAGACCTAATATTCGAAAGTTCGCCGA 1327
Query 1346 GGAAGAATCTTATCTCATGGAATGCGATAATCTCAGGGTTTTACCATAACGGGTTT-CCT 1404
||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 1328 AGAAGAATCTAATCTCATGGAACGCGATAATCTCGGGGTTTTACCATAATGGGTTTTCCT 1387
Query 1405 TTTGAAGGTTTGGAAAGGTTCTCGTGCTTGCTAGA-GTCAGAGGTCCGAATCCTACCTGA 1463
|| |||||||||||||| ||||| ||||||||||| | ||||||||| |||| |||||||
Sbjct 1388 TT-GAAGGTTTGGAAAGATTCTCTTGCTTGCTAGAAG-CAGAGGTCCTAATCATACCTGA 1445
Query 1464 TGCTTATACTCTCAGTACCCTTTTGAGCATTTGCGTA-AGCACTTCATCTTTGATGCTCG 1522
|||||||||||| || | |||||||||||||||||| | || ||| |||||||||||||
Sbjct 1446 TGCTTATACTCTTAGCATTCTTTTGAGCATTTGCGTAGA-CATTTCGTCTTTGATGCTCG 1504
Query 1523 GA-AGCCAAACTCACGCTTACGTCCTTAGACACGGCCAATTCAAGGAGACATTGATAGGT 1581
|| ||| | ||||||||||||| ||| ||||| || |||||||||||||| ||||| |||
Sbjct 1505 GAGAGC-AGACTCACGCTTACGCCCTCAGACATGGGCAATTCAAGGAGACGTTGATTGGT 1563
Query 1582 AATGCCCTCATAAACATGTACTCTCAATGCGGGACTATACAAAACTCTCTTGAAGTGTTC 1641
|||||| | || |||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct 1564 AATGCCTTTATCAACATGTACTCTCAATGCGGGACTCTACAAAAATCTCTTGCTGTATTC 1623
Query 1642 AATCAGATGTCTGAAAAAGATGTTGTGTCATGGAATTCTCTGATCTCTGCATACTCGAGA 1701
|||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 1624 AATCAGATATCTGAAAAGGACACTGTGTCATGGAATTCTCTGATCTCTGCATACGCGAGA 1683
Query 1702 CACGGTGAA-GGAGAGAACGCGGTTAATACCTACAAGACAATGCAAGATGAAGGAAAGGT 1760
||||| ||| ||||||| |||||| |||||||||||| |||||||||||||| |||||
Sbjct 1684 CACGG-GAAAGGAGAGAGTGCGGTTCTTACCTACAAGACGATGCAAGATGAAGGCAAGGT 1742
Query 1761 C-ATTCCCGATGCAGCCACATTCTCAGCGGTTCTCTCTGCTTGCAGCCACGCCGGTTTAG 1819
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1743 GGAT-CCCGATGCAGCCACATTATCAGCGGTTCTCTCTGCTTGCGGCCACGCCGGTTTAG 1801
Query 1820 TGGAAGAGGGACTCGAGATTTTCAACTCAATGGTGGAATTTCACGGTGTGATACGAAATG 1879
| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1802 TCAAAGAGGGACTCGAGATTTTCAACTCAATGGTGGAATTTCACGGTCTGATACCAAATG 1861
Query 1880 TAGATCATTTTTCATGCTTAGTTGACCTTCTTGGTCGAGCGGGCCACCTCGATGAAGCGG 1939
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1862 TGGATCATTTTTCATGCTTAGTTGACCTTCTTGGTCGAGCAGGTCACCTCGATGAAGCAG 1921
Query 1940 AAAGCTTGGTGAAAATCAGCGAAAAGACCATCGGGTCTCGGGTAGATGTGTGGTGGGCTT 1999
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1922 AAAGCTTGGTGAAAATCAGCGAGAAGACCATTGGGTCTCGGGTAGATGTGTGGTGGGCTT 1981
Query 2000 TGTTTAGTGCTTGTGCTGCTCATGGAGATTTGAAGCTAGGGAAGATGGTTGCGAAGTTAC 2059
|||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||
Sbjct 1982 TGTTTAGTGCTTGTGCTGCTCATGGAGATTTGAAACTAGGGAAAATGGTTGCGAGGTTAC 2041
Query 2060 TAATGGAGAAAGAGAAGGATGATCCATCAGTTTATGTTCAACTGTCCAATATCTACGCAG 2119
||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 2042 TAATGGAGAAAGAGAAGAATGATCCATCGGTTTATGTTCAACTGTCGAATATATACGCAG 2101
Query 2120 GAGCTGGTATGTGGAAAGAAGCAGAAGAGACGAGAAGAGCCATAAACATGATTGGAGCTA 2179
|||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2102 GAGCTGGTTTGTGGAAAGAAGCAGAAGAGACGAGAAAAGCCATCAACATGATTGGAGCTA 2161
Query 2180 TGAAACAACGAGGTTGCAGCTGGATGAGATTGTAA 2214
|||||||||||||||||||||||||||||||||||
Sbjct 2162 TGAAACAACGAGGTTGCAGCTGGATGAGATTGTAA 2196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86883848845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5