BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49740.1 Length=2307 Score E Sequences producing significant alignments: (Bits) Value Ahg485336 jgi|Araly1|485336|fgenesh2_kg.5__1328__AT3G49740.1 3062 0.0 > Ahg485336 jgi|Araly1|485336|fgenesh2_kg.5__1328__AT3G49740.1 Length=2196 Score = 3062 bits (1658), Expect = 0.0 Identities = 2020/2195 (92%), Gaps = 24/2195 (1%) Strand=Plus/Plus Query 32 TATCAGCCATA-GCAGAAAACTCTACCACGTTGCTCAATTTAAACCGGAGACTAACGGGT 90 ||||||||||| || |||| ||| || ||||||||||||||||||||||||||||||| | Sbjct 14 TATCAGCCATAGGC-GAAAGCTCGACTACGTTGCTCAATTTAAACCGGAGACTAACGGCT 72 Query 91 CTCACTCGTTCCGGCGAGAACAGAAACGCTCTCAAGCTCTTCGCCGATGTTCACCGTTGC 150 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 CTCACTCGTTCCGGCGAGAACAGAAACGCTCTCAAGCTCTTCGCCGATGTTCACCGTTGT 132 Query 151 ACAACTCTGAGACCAGACCAGTACAGTGTCTCGTTAGCTATTACTACAGCTAGGCACCTC 210 | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 133 ATAACTCTGAGACCAGACCAGTACAGTGTCTCGTTAGCTATTACTGCAGCTGGGCACCTC 192 Query 211 CGTGATACTATCTTTGGTGGTCAGGTTCATTGCTATGCGATTCGCTCTGGTTTATTGTGT 270 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 CGTGATACCATCTTCGGTGGTCAGGTTCATTGCTATGCGATTCGCTCTGGTTTATTGTGT 252 Query 271 CACTCTCACGTTTCCAATACGCTTCTTTCGCTATATGAGAGATTAGGGAACTTAGCTTCG 330 ||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 253 CACTCTCACGTCTCCAATACGCTTCTCTCGCTATACGCGAGATTAGGGAACTTAGCTTCG 312 Query 331 TTGAAGAAGAAGTTCGACGAGATTGA-TGAACCTGATGTTTATTCATGGACGACGCTTCT 389 ||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||| | Sbjct 313 TTGAAGAGGAAGTTCGAAGAGATT-ATTGAACCTGATGTTTATTCATGGACGACGCTTTT 371 Query 390 GAGTGCAAGTTTTAAGCTTGGTGATATAGAGTATGCCTTTGAGGTGTTTGATAAAATGCC 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 GAGTGCAAGTTTTAAGCTTGGTGATATAGAGTATGCCTTTGAGGTGTTTGATAAAATGCC 431 Query 450 TGAGAGAGATGATGTTGCGATTTGGAATGCTATGATTACTGGTTGCAAAGAGAGTGGGTA 509 |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 432 TGAGAGGGATGATGTTGCGGTTTGGAATGCTATGATCACTGGTTGCAAAGAGAGTGGGTA 491 Query 510 TCACGAAACGAGTGTTGAGTTGTTTCGAGAAATGCATAAGCTTGGTGTTCGACATGATAA 569 ||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 492 TCAAGGAACGAGTATTGAGTTGTTTCGAGAAATGCACAAGCTTGGTGTTCGACATGATAA 551 Query 570 GTTTGGGTTTGCTACTATTTTGAGTATGTGTGACTATGGTTCTTTGGATTTTGGTAAGCA 629 |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 552 GTTTGGCTTTGCTACTGTTTTGAGTATGTGTTACTATGGTTCTTTGGATTTTGGTAAGCA 611 Query 630 GGTGCATTCGCTGGTTATAAAAGCTGGATTTTTTATTGCTTCATCTGTTGTGAATGCACT 689 |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 612 GGTGCATTCGCTAGTTATAAAAGCTGGATTTTTTGTTGCATCATCTGTTGTGAATGCACT 671 Query 690 AATTACAATGTATTTCAATTGCCAAGTGGTTGTTGATGCTTGTCTGGTGTTTGAAGAAAC 749 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 672 AATTACAATGTATTTCAATTGCCAAGTGGTTGTTGATGCTCGTCTGGTGTTTGAAGAAGC 731 Query 750 TGATGTTGCTGTTCGTGATCAGGTTACTTTTAATGTGGTTATTGATGGTTTGGCTGGTTT 809 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 732 TGATGTTGCTGTTCGTGATCAGGTCACTTTTAATGTGGTTATTGATGGTTTGGCTGGTTT 791 Query 810 CAAAAGAGACGAGTCTTTGTTGGTGTTTAGAAAAATGCTAGAAGCTAGTCTTAGACCAAC 869 ||||||||| ||||||||||||||||||||| ||||| | |||||| ||||||||||||| Sbjct 792 CAAAAGAGAGGAGTCTTTGTTGGTGTTTAGACAAATGGTCGAAGCTGGTCTTAGACCAAC 851 Query 870 CGATTTGACCTTTGTTAGTGTTATGGGTTCATGTTCATGTGCGGCTATGGGACACCAAGT 929 ||| ||||||||||||| |||||| ||||||||||||||| | |||||||||||||||| Sbjct 852 TGATCTGACCTTTGTTAGCGTTATGAGTTCATGTTCATGTGAGACTATGGGACACCAAGT 911 Query 930 ACATGGACTAGCCATCAAGACAGGTTATGA-GAAGTATACTTTGGTTAGCAATGCCACTA 988 |||||||||||||||||||||||| ||||| || |||||||||||| |||||| |||||| Sbjct 912 ACATGGACTAGCCATCAAGACAGGGTATGAAGA-GTATACTTTGGTCAGCAATTCCACTA 970 Query 989 TGACAATGTATTCTTCTTTTGAAGA-TTTTGGTGCGGCTCATAAGGTTTTTGAGTCATTG 1047 |||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||| Sbjct 971 TGACAATGTATTCTTCTTTTGA-GAATTTTGGTGCGGCTCTTAAGGTTTTCGAGTCATTG 1029 Query 1048 GAAGAGAAAGACTTGGTTACTTGGAACACAATGATCTCAAGTTATAACCAAGCGAAATTG 1107 ||||||||||| ||| |||||||||| |||||||| || |||||||||||||||| ||| Sbjct 1030 GAAGAGAAAGATTTGATTACTTGGAATACAATGATTTCTGGTTATAACCAAGCGAACTTG 1089 Query 1108 GG-CAAGTCTGCGATGTCGGTATACAAGAGAATGCACATAATAGGAGTTAAACCGGATGA 1166 || || ||||||| ||| | | |||||| ||||||| ||||||||||||||||||||| Sbjct 1090 GGGCA-GTCTGCGTTGTTGTTGTACAAGCGAATGCATGGAATAGGAGTTAAACCGGATGA 1148 Query 1167 GTTTACTTTTGGAAGTCTTTTAGCAACCTCTCTGGATTTAGATGTCCTGGAGATGGTTCA 1226 ||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||| Sbjct 1149 GTTTACTTTCGGAAGTCTTTTAGCAAGCTCTCTGGATTTGGATGCCCTGGAGATGGTTCA 1208 Query 1227 AGCGTGTATAATCAAGTTTGGGCTTAGTTCAAAGATTGAAATTTCCAATGCGTTGATATC 1286 ||||||| ||||||| || ||||||||||||||||| |||||||| ||||| ||||||| Sbjct 1209 AGCGTGTGTAATCAAATTCGGGCTTAGTTCAAAGATCGAAATTTCGAATGCACTGATATC 1268 Query 1287 TGCCTACTCGAAGAATGGACAGATAGAAAAAG-CTGACCTATTATTTGAAAGATCTCTGA 1345 |||||| |||||| | ||| ||||| | |||| | |||||| |||| ||||| || | || Sbjct 1269 TGCCTATTCGAAGCACGGAAAGATA-ACAAAGGCAGACCTAATATTCGAAAGTTCGCCGA 1327 Query 1346 GGAAGAATCTTATCTCATGGAATGCGATAATCTCAGGGTTTTACCATAACGGGTTT-CCT 1404 ||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| ||| Sbjct 1328 AGAAGAATCTAATCTCATGGAACGCGATAATCTCGGGGTTTTACCATAATGGGTTTTCCT 1387 Query 1405 TTTGAAGGTTTGGAAAGGTTCTCGTGCTTGCTAGA-GTCAGAGGTCCGAATCCTACCTGA 1463 || |||||||||||||| ||||| ||||||||||| | ||||||||| |||| ||||||| Sbjct 1388 TT-GAAGGTTTGGAAAGATTCTCTTGCTTGCTAGAAG-CAGAGGTCCTAATCATACCTGA 1445 Query 1464 TGCTTATACTCTCAGTACCCTTTTGAGCATTTGCGTA-AGCACTTCATCTTTGATGCTCG 1522 |||||||||||| || | |||||||||||||||||| | || ||| ||||||||||||| Sbjct 1446 TGCTTATACTCTTAGCATTCTTTTGAGCATTTGCGTAGA-CATTTCGTCTTTGATGCTCG 1504 Query 1523 GA-AGCCAAACTCACGCTTACGTCCTTAGACACGGCCAATTCAAGGAGACATTGATAGGT 1581 || ||| | ||||||||||||| ||| ||||| || |||||||||||||| ||||| ||| Sbjct 1505 GAGAGC-AGACTCACGCTTACGCCCTCAGACATGGGCAATTCAAGGAGACGTTGATTGGT 1563 Query 1582 AATGCCCTCATAAACATGTACTCTCAATGCGGGACTATACAAAACTCTCTTGAAGTGTTC 1641 |||||| | || |||||||||||||||||||||||| ||||||| ||||||| || ||| Sbjct 1564 AATGCCTTTATCAACATGTACTCTCAATGCGGGACTCTACAAAAATCTCTTGCTGTATTC 1623 Query 1642 AATCAGATGTCTGAAAAAGATGTTGTGTCATGGAATTCTCTGATCTCTGCATACTCGAGA 1701 |||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||| Sbjct 1624 AATCAGATATCTGAAAAGGACACTGTGTCATGGAATTCTCTGATCTCTGCATACGCGAGA 1683 Query 1702 CACGGTGAA-GGAGAGAACGCGGTTAATACCTACAAGACAATGCAAGATGAAGGAAAGGT 1760 ||||| ||| ||||||| |||||| |||||||||||| |||||||||||||| ||||| Sbjct 1684 CACGG-GAAAGGAGAGAGTGCGGTTCTTACCTACAAGACGATGCAAGATGAAGGCAAGGT 1742 Query 1761 C-ATTCCCGATGCAGCCACATTCTCAGCGGTTCTCTCTGCTTGCAGCCACGCCGGTTTAG 1819 || ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1743 GGAT-CCCGATGCAGCCACATTATCAGCGGTTCTCTCTGCTTGCGGCCACGCCGGTTTAG 1801 Query 1820 TGGAAGAGGGACTCGAGATTTTCAACTCAATGGTGGAATTTCACGGTGTGATACGAAATG 1879 | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1802 TCAAAGAGGGACTCGAGATTTTCAACTCAATGGTGGAATTTCACGGTCTGATACCAAATG 1861 Query 1880 TAGATCATTTTTCATGCTTAGTTGACCTTCTTGGTCGAGCGGGCCACCTCGATGAAGCGG 1939 | |||||||||||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 1862 TGGATCATTTTTCATGCTTAGTTGACCTTCTTGGTCGAGCAGGTCACCTCGATGAAGCAG 1921 Query 1940 AAAGCTTGGTGAAAATCAGCGAAAAGACCATCGGGTCTCGGGTAGATGTGTGGTGGGCTT 1999 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1922 AAAGCTTGGTGAAAATCAGCGAGAAGACCATTGGGTCTCGGGTAGATGTGTGGTGGGCTT 1981 Query 2000 TGTTTAGTGCTTGTGCTGCTCATGGAGATTTGAAGCTAGGGAAGATGGTTGCGAAGTTAC 2059 |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| Sbjct 1982 TGTTTAGTGCTTGTGCTGCTCATGGAGATTTGAAACTAGGGAAAATGGTTGCGAGGTTAC 2041 Query 2060 TAATGGAGAAAGAGAAGGATGATCCATCAGTTTATGTTCAACTGTCCAATATCTACGCAG 2119 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 2042 TAATGGAGAAAGAGAAGAATGATCCATCGGTTTATGTTCAACTGTCGAATATATACGCAG 2101 Query 2120 GAGCTGGTATGTGGAAAGAAGCAGAAGAGACGAGAAGAGCCATAAACATGATTGGAGCTA 2179 |||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 2102 GAGCTGGTTTGTGGAAAGAAGCAGAAGAGACGAGAAAAGCCATCAACATGATTGGAGCTA 2161 Query 2180 TGAAACAACGAGGTTGCAGCTGGATGAGATTGTAA 2214 ||||||||||||||||||||||||||||||||||| Sbjct 2162 TGAAACAACGAGGTTGCAGCTGGATGAGATTGTAA 2196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86883848845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5