BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49750.1
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485337 jgi|Araly1|485337|fgenesh2_kg.5__1329__AT3G49750.1 1341 0.0
> Ahg485337 jgi|Araly1|485337|fgenesh2_kg.5__1329__AT3G49750.1
Length=843
Score = 1341 bits (726), Expect = 0.0
Identities = 790/822 (96%), Gaps = 0/822 (0%)
Strand=Plus/Plus
Query 76 AGTCACCGGTTACTCCTTCTCCTTCTACTAATCTTCCAAACGGCACAACGTTTAACCACC 135
||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 22 AGTTACCGGTTACTCCTTCTCCTTCTACTAATCTTCGAAACGACACGACGTTTAACCACC 81
Query 136 GCCGATCCAAACGACGAAGCGTGTTTGAAAAACCTCCGGCAAAACTTAGAAGATCCGGCG 195
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 82 GCTGATCCAAACGACGAAGCGTGTTTAAAAAACCTCCGGCAAAACTTAGAAGATCCGGCG 141
Query 196 AGTAATCTCCGTAACTGGACAAACTCCGTCTTCTCAAATCCATGCTCCGGCTTCACCTCA 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AGTAATCTCCGTAACTGGACAAACTCCGTCTTCTCAAATCCATGCTCCGGCTTCACCTCT 201
Query 256 TACCTCCCCGGAGCTACCTGTAACAACGGAAGAATCTACAAACTCTCACTCACAAACCTC 315
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 202 TACCTCCCCGGAGCTACCTGTAACAACGGGAGAATCTACAAACTCTCTCTCACTAACCTC 261
Query 316 TCTCTCCGCGGCTCAATCTCACCGTTTCTATCAAACTGTACAAATCTCCAATCCCTAGAT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCTCTCCGCGGCTCAATCTCACCGTTTCTATCAAACTGTACAAATCTCCAATCCCTAGAT 321
Query 376 CTATCATCAAACCAGATCTCCGGCGTAATCCCACCGGAGATTCAGTATCTCGTTAACCTC 435
||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 322 CTATCTTCAAACCAGATCTCCGGTATCATCCCACCGGAGATTCAGTTTCTCGTTAACCTC 381
Query 436 GCCGTACTAAACCTCTCATCGAATCATCTCTCCGGCGAAATCACTCCGCAGCTCGCTCTT 495
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 382 GCCGTATTAAACCTCTCATCGAATCAACTCTCCGGCGAAATCACTCCGCAGCTAGCTCTA 441
Query 496 TGCGCTTACTTAAACGTAATCGATCTCCACGATAACGAATTATCCGGTCAGATTCCGCAG 555
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 442 TGCGCTTACTTAAACGTAATCGATCTCCACGATAACCAACTATCCGGTCAGATTCCGCAG 501
Query 556 CAATTAGGTCTATTAGCGAGGCTCTCGGCGTTTGATGTGTCGAATAACAAACTTTCCGGT 615
||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 502 CAATTAGGTCTTTTAGCTCGGTTATCGGCGTTTGATGTGTCGAATAACAAACTTTCCGGT 561
Query 616 CAGATTCCGACGTATTTGTCGAATAGGACTGGGAATTTCCCGAGGTTTAACGCGAGTTCG 675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 562 CAGATTCCGACGTATTTGTCGAATAGGACTGGGAATTTCCCGAGGTTTAACGCGAGCTCG 621
Query 676 TTTATAGGGAATAAAGGATTGTATGGTTATCCGTTGCAGGAGATGATGATGAAGAGTAAA 735
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TTCATAGGGAATAAAGGATTGTATGGTTATCCGTTGCAGGAGATGATGATGAAGAGTAAA 681
Query 736 GGTTTGTCTGTGATGGCCATTGTTGGGATTGGACTTGGGAGTGGAATCGCGAGCTTGATG 795
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GGTTTATCGGTGATGGCGATTGTTGGGATTGGACTTGGGAGTGGAATCGCGAGCTTGATG 741
Query 796 ATTAGTTTTACTGGTGTTTGTTTATGGTTGAGGATTACTGAGAAGAAGATTGTTGAAGAA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ATTAGTTTTACTGGTGTTTGTTTATGGTTGAGGATTACTGAGAAGAAGATTGTTGAAGAA 801
Query 856 GAAGGTAAGATTAGTCAATCTATGCCTGATTACTAAACGTAA 897
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 802 GAAGGTAAGATTAGTCAATCTATGCCTGATTACTAAACTTAA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39800325348
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5