BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49760.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937802 jgi|Araly1|937802|scaffold_501993.1 747 0.0
> Ahg937802 jgi|Araly1|937802|scaffold_501993.1
Length=587
Score = 747 bits (404), Expect = 0.0
Identities = 542/605 (90%), Gaps = 24/605 (4%)
Strand=Plus/Plus
Query 62 CTCTTTTATTTTCCGGTTAAGCACCATGATGTCTACTATTTCCCCGGTTTTCTCAACCGA 121
|||| || |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1 CTCTCTT-TTTTCCGGTTAAGCACCATGATGTCTACTATTTCTCCAGTTTTCTCAACCG- 58
Query 122 ACCGGGTCTATTAACCTCTGTCCTCCCAGCTTTTGAAACCAGTTTCACTCCATGGGACAT 181
| ||||||||||| |||||||||| |||||| ||| |||||||||||||||
Sbjct 59 A--------ATTAACCTCTG---TCCCAGCTTTCGAAACCGGTTCCACTCCATGGGACAT 107
Query 182 TTCACACCTCTTCTCGGTCTTCGATTCATTAATCGATCCAAA-ACCGGTTTCGACCCATG 240
||||||||||||||||||||||||||| | ||| ||| |||| |||||||||| ||||||
Sbjct 108 TTCACACCTCTTCTCGGTCTTCGATTCGTCAATGGAT-CAAATACCGGTTTCGGCCCATG 166
Query 241 ACTATGGTTCAGTAAACCAGATCGGTTCAGAC-ATGTCTCCGACCGACAA-TACCGACGA 298
||||||||||||||||||||| | || ||||| || ||| ||||| || |||||| ||
Sbjct 167 ACTATGGTTCAGTAAACCAGACCAGTACAGACGTTG-CTCTAACCGA-AAGTACCGATGA 224
Query 299 GCGGAAAAAGAAACGGAAATTATCGAACCGGGAATCGGCTAAGCGGTCAAGAGAGAAGAA 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 225 GCGGAAAAAGAAACGGAAATTATCGAACCGGGAATCGGCTAAGCGATCAAGAGAGAAGAA 284
Query 359 ACAAAAGCACTTGGAGGAGATGAGTATCCAGCTAAACCAACTCAAAATTCAGAACCAAGA 418
|||||| |||||||||||||||||||| ||||||||||| ||||| | ||||||||||||
Sbjct 285 ACAAAAACACTTGGAGGAGATGAGTATGCAGCTAAACCAGCTCAAGACTCAGAACCAAGA 344
Query 419 ATTGA-AGAACCAGCTTCGGTACGTTTTATACCATTGTCAACGAACGAAGATGGAAAATG 477
||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 345 ATTGACA-AACCAGCTCCGGTACGTTTTATACCACTGTCAACGAACGAAGATGGAAAATG 403
Query 478 ATCGTCTACTTATGGAGCACCGTA-TACTGCATGATAAGTTGTTGAACATCAGACAAGTT 536
||||||||| |||||||||||||| | || || ||||||||||||||||| |||||||||
Sbjct 404 ATCGTCTACGTATGGAGCACCGTAGT-CTCCAAGATAAGTTGTTGAACATTAGACAAGTT 462
Query 537 TTGATGTTTCGTCAAACCTAACGAAGCTCATCAAACTGTGCCACTTGGCCTTGTAATAAC 596
|||||||||||||||| | |||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 463 TTGATGTTTCGTCAAATCGAACGAAGCTCATTAAACTGTTCCACTTGGCCTTGTAGTAAC 522
Query 597 AGTACTGTTGTTACGGTCCAGCAAGATCCGTCGATCATGTTATCATAAGTTGAGGTTTCT 656
|||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||
Sbjct 523 AGTACTGTTGTTACGGTCCAACAAGATCCGTCGATCATGTTATAATACTTTGATGTTTCT 582
Query 657 -GAAA 660
||||
Sbjct 583 TGAAA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5