BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49790.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485340 jgi|Araly1|485340|fgenesh2_kg.5__1332__AT3G49790.1 2039 0.0
> Ahg485340 jgi|Araly1|485340|fgenesh2_kg.5__1332__AT3G49790.1
Length=1601
Score = 2039 bits (1104), Expect = 0.0
Identities = 1291/1376 (94%), Gaps = 33/1376 (2%)
Strand=Plus/Plus
Query 368 ATGGATAAGTTAGGGTTGAGCAAAAGGGGTTATTTTGATTTCGCTCTCAAGAACAAAAAA 427
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 229 ATGGATAAGTTAGGGTTGAGGAAAAGGGGTTATTTTGATTTTGCTCTCAAGAACAAAAAA 288
Query 428 TGGATATTATTAGCAGTAAGTGGTTACGGTGCTTTTAGGGTTTATCATTCTCCTTCAATT 487
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 289 TGGATTTTATTAGCAGTAAGTGGTTATGGTGCTTTTAGGGTTTATTATTCTCCTTCAATT 348
Query 488 TCCCAGAAACGGAAACGAATCTCTAAGCTTTTCACTCTTCTTCTCAATCTCATCGAAGCT 547
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 349 TCCCAGAAACGCAAACAAATCTCTAAGCTTTTTACTCTTCTTCTCAATCTCATCGAAGCT 408
Query 548 GCTTCTGATTCCGCTGAAACCGTTAGTGTTATCTCCAAAGATCTAACAGAGTTTCTCAGA 607
|||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||
Sbjct 409 GCTTCTGATTCCGCTGAAACTGTTAGTGTTATCTCCAAAGATCTCACTGTCTTTCTCAGA 468
Query 608 TCCGATTCAGATCAAATCCCAAATAGTTTGAAGCAGATTTCCAAAATCGCGAAATCAGAT 667
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 469 TCCGATTCAGATCAAATCCCAAATAGTTTCAAGCAGATTTCGAAAATCGCGAAATCAGAT 528
Query 668 GAGCTTAATTCTTCTTTGATCCGATTCACTCAAGCTATGACCGTTGGATTGATCCGTGGA 727
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 529 GAGTTTAATTCTTCTTTGATCAGATTCACTCAAGCTATGACTGTTGGATTGATCCGTGGA 588
Query 728 ATTGATGATGGATCCGGGTCGGGTTTTACTGATCGGGTTATGGATAAGCTCTTTACGAAA 787
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 589 ATTGATGATGGATCCGGTTCGGGTTTTTCTGATCGGGTTATGGATAAGCTGTTTACTAAA 648
Query 788 TCCGGGTCGGGTTTTGCTTCGGCGATTGTTGGTAGCTTTGCGAGGAACTTAGTCGTTGCG 847
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 649 TCCGGGTCGGGTTTTGCTTCGGCTATTGTTGGTAGCTTTGCGAGAAACTTAGTCGTTGCG 708
Query 848 CTTTATTC--C-TCC-GC--CGGCG-A--T-GGA-----TCGAATTCGAAATTGCTCGAC 892
||||||| | ||| || ||| | | | || ||||||||||| ||||| |||
Sbjct 709 TTTTATTCATCATCCAGCGACGGTGAATCTCCGATCTTTTCGAATTCGAAGTTGCTGGAC 768
Query 893 GCGGTTTTCTCTGATGATGGGAGGAGATTGATCGGCGATTGCGTTCAGCGTTTCGTGAGT 952
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GCGGTTTTTTCCGATGATGGGAGGAGATTGATCGGCGATTGCGTTCAGCGTTTCGTGAGT 828
Query 953 ACTGCGGTTTCGGTTTATCTCGATAAGACGAGCGATGTTAACGTATTCGACGATTTATTC 1012
|||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 829 ACTGCGGTTTCGGTTTATCTCGATAAGACGAGTGACGTTAACGTTTTCGAGGATTTATTC 888
Query 1013 GCCGGTTTAACCAATCCGAAACATGAAGGAAAGGTTAAGCAAACGCTTGTAACGCTATGT 1072
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 889 GCCGGTTTAACCAATCCAAAACACGAAGGGAAGGTTAAGCAAACGCTTGTGACGCTATGT 948
Query 1073 AACAGCGCGGTTGAGACGTTTGTAAGAGCGTCGCGGAAACCGGTTCAATTGAACCGGTCA 1132
|| | ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 949 AATAACGCGGTTGAAACGTTTGTTAGAGCGTCGCGGAAACCGGTTCAATTGAACCGATCA 1008
Query 1133 TCGTCATGTCAAGATTCGTCTCAAACGCTGACCGTTGGATCAACGAAACAAG-CGACGTG 1191
|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 1009 TCGTCATGTCAAGATTCGTCTCAAACGCTGACCGTTGGATCATCGAAAC-AGACGACGTG 1067
Query 1192 GATCGATCGGGTGTCGTCGTCGTTATCGGTACCGAGTAACCGGAAATATGTGGTGGATTT 1251
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1068 GATCGATCGGGTATCGTCGTCGTTATCGGTACCGAGTAACCGGAAATACGTGGTGGATTT 1127
Query 1252 AACCGGGCGGGTAACGTTTGAGACGGTTAGATCGTTGTTAGAAGTGTTGATTgagagagc 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AACCGGGCGGGTAACGTTTGAGACGGTTAGATCGTTGTTAGAAGTGTTGATTGAGAGAGC 1187
Query 1312 aaatggtaaagtggagagttatgtggagaaagtgagagagagaggaaatgagacaaggag 1371
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1188 AAATGGTAAAGTGGAGAGTTATGTGGAGAAAGTGAGAGAGAGAGGAAACGAGACAAGGAG 1247
Query 1372 atttgtgagagtTAAAACATCACTTCTTCATAGTTTATGTTTGTCTCTCTGTTTACAGAT 1431
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1248 ATTTGTGAGAGTTAAAACATCACTTCTTCATAGTTTATGTTTGTCTCTATGTTTACAGAT 1307
Query 1432 TGTTGAAGCTCCATGGATGCTGACTCCAAGAAACTGATTTTCGGATTTTCAGGCTAAAAG 1491
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1308 TGTTGAAGCTCCATGGATGCTGACTCCAAGAAACTGATTTT-GGATTTTCAGGCTAAAAG 1366
Query 1492 ACAAGAAACACTTTTGTGTTTG---GTTT-----AATTCTTGGATTCATCAATCAAATTT 1543
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1367 ACAAGAAACACTTTTGTGTTTGTTTGTTTGGTTTAATTCTTGGATTCATCAATCAAATTT 1426
Query 1544 GATGTAAAATTGtttttttttttta---tttt--atttgaggagatgattgtttttgact 1598
|||||||||||||||||||||| | |||| |||||||||| |||||||||||||||
Sbjct 1427 GATGTAAAATTGTTTTTTTTTTAAAAAATTTTTTATTTGAGGAGGTGATTGTTTTTGACT 1486
Query 1599 ttttt-gGATAGAAAGAAATGGGTTGGTTTGAATGttttttttGGATTTGGATATTTGGA 1657
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1487 TTTTTTGGATAGAAAGAAATGGGTTGGTTTGAATGTTTTTTT-GGATTTGGATATTTGGA 1545
Query 1658 TAATGATAAGTGTGGGACATTATTTGTTACACTTTTGTGGATAATATATGGTATGG 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TAATGATAAGTGTGGGACATTATTTGTTACACTTTTGTGGATAATATATGGTATGG 1601
Score = 272 bits (147), Expect = 6e-72
Identities = 211/238 (89%), Gaps = 19/238 (8%)
Strand=Plus/Plus
Query 37 TCTCTCTTACTCTTTTGTTACAA-TTCTGTTAACAAACTTTGACGTCACCATTTGAATTC 95
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTTTCTCTTTTGTTACAATTTCTGTTAACAAACTTTGACGTCACCATTTGAATTC 60
Query 96 TTATCCAATTCCCATTTCCTAACAGAAtttttcctctttttctctttctctttttcattc 155
|||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 61 TTATCCAATT-CCATTCCCTAACAGAA-TTTTCC-CTTTTTCTCTTTCTCTTTTTCATTC 117
Query 156 cttagagattcttgattctcccacttccttctttAGTCGTTACAGTCTTTGCTCTGTTTT 215
||| |||||||||||| ||||||||||||||||| || | | |||| ||||||||||
Sbjct 118 CTTCCAGATTCTTGATTTTCCCACTTCCTTCTTTACTC-T-A---TCTT-GCTCTGTTTT 171
Query 216 Caaaaaaaaaaa-------GTTGGTTCCTTTCTCAACTT-TTTTCCCGGGAAAGTGAA 265
|||||||||||| |||| ||||||||||| || ||||||||||||||||||
Sbjct 172 CAAAAAAAAAAAAAAAAAAGTTGCTTCCTTTCTCAT-TTATTTTCCCGGGAAAGTGAA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5