BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49820.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897864 jgi|Araly1|897864|Al_scaffold_0005_1830                    436    5e-122


> Ahg897864 jgi|Araly1|897864|Al_scaffold_0005_1830
Length=426

 Score =  436 bits (236),  Expect = 5e-122
 Identities = 386/452 (85%), Gaps = 35/452 (8%)
 Strand=Plus/Plus

Query  1    ATGAAAGCGAAAGTCATAGAGAAAGAGAACTGCTTCGTATGGTTGGTTAAGGCTCCTTTT  60
            ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAGGGAAAGGCATAGAGAAAGACAACTGCTTCGTATGGTTGGTTAAGGCTCCTTTT  60

Query  61   CGTCTGTTGATCATGGCACGTGACGCCTACATACGAAGCATTACGTCATGCTCCGGCGCC  120
            ||| | ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct  61   CGTTTCTTGATCATGGCACGTGACGCCTATATACGTAGCATTACGTCATGCTCCCGCGCC  120

Query  121  GGAAT--TTATTCCGGTGGTGGATCATCTGGTTTTGGTCAACTCTCCGGAAACTTCCAAA  178
            |||||  |||  ||||||||||||| || ||||||||||| | |||||||||||||||||
Sbjct  121  GGAATCCTTA--CCGGTGGTGGATCCTCCGGTTTTGGTCAGCGCTCCGGAAACTTCCAAA  178

Query  179  TCTGCGATCCGCCTAGCACCGCCCTTCCTCGAAGCTTTACCTTGACGTCGGCGGCACATG  238
            | || |||||||||||||||| |||||| || |||||||||||||||||  |||||||||
Sbjct  179  TATGTGATCCGCCTAGCACCGTCCTTCCCCGGAGCTTTACCTTGACGTCAACGGCACATG  238

Query  239  ATCAAGGCTGTCTGACACGTGGCGGACAACCTACGATTGCAATGAGACAATCATTGTCCT  298
             |||||   || || ||  ||  | ||||  | | ||||   |    |       ||  |
Sbjct  239  TTCAAGA--GT-TGGCAA-TGA-G-ACAA--T-C-ATTG---T----C-------GT--T  272

Query  299  TGGATCATCGGAAGAACAATAGATGCGTTGTTGTGATGGGAAGAATAGATGAGGAGATGT  358
             ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct  273  -GGATCATCGGAGGAACTATAGATGCGTTGTTGTGATGGGAAGAATCGATGAGGAGATTT  331

Query  359  CTTGTGATGATGATGATGAGTTTCAAGAAGAAGACTCTTTTCTTGATTATGGTAATTGCG  418
            |||||||||||||||| |  ||||||||||||||||||||||||||||||||||| ||||
Sbjct  332  CTTGTGATGATGATGA-G--TTTCAAGAAGAAGACTCTTTTCTTGATTATGGTAAATGCG  388

Query  419  AGATTCTTACAAAAGAAA-TAGAAAAACCATC  449
            ||||| |||||||| ||| |||||||||||||
Sbjct  389  AGATTTTTACAAAAAAAAATAGAAAAACCATC  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5