BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49820.1 Length=486 Score E Sequences producing significant alignments: (Bits) Value Ahg897864 jgi|Araly1|897864|Al_scaffold_0005_1830 436 5e-122 > Ahg897864 jgi|Araly1|897864|Al_scaffold_0005_1830 Length=426 Score = 436 bits (236), Expect = 5e-122 Identities = 386/452 (85%), Gaps = 35/452 (8%) Strand=Plus/Plus Query 1 ATGAAAGCGAAAGTCATAGAGAAAGAGAACTGCTTCGTATGGTTGGTTAAGGCTCCTTTT 60 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAAGGGAAAGGCATAGAGAAAGACAACTGCTTCGTATGGTTGGTTAAGGCTCCTTTT 60 Query 61 CGTCTGTTGATCATGGCACGTGACGCCTACATACGAAGCATTACGTCATGCTCCGGCGCC 120 ||| | ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| Sbjct 61 CGTTTCTTGATCATGGCACGTGACGCCTATATACGTAGCATTACGTCATGCTCCCGCGCC 120 Query 121 GGAAT--TTATTCCGGTGGTGGATCATCTGGTTTTGGTCAACTCTCCGGAAACTTCCAAA 178 ||||| ||| ||||||||||||| || ||||||||||| | ||||||||||||||||| Sbjct 121 GGAATCCTTA--CCGGTGGTGGATCCTCCGGTTTTGGTCAGCGCTCCGGAAACTTCCAAA 178 Query 179 TCTGCGATCCGCCTAGCACCGCCCTTCCTCGAAGCTTTACCTTGACGTCGGCGGCACATG 238 | || |||||||||||||||| |||||| || ||||||||||||||||| ||||||||| Sbjct 179 TATGTGATCCGCCTAGCACCGTCCTTCCCCGGAGCTTTACCTTGACGTCAACGGCACATG 238 Query 239 ATCAAGGCTGTCTGACACGTGGCGGACAACCTACGATTGCAATGAGACAATCATTGTCCT 298 ||||| || || || || | |||| | | |||| | | || | Sbjct 239 TTCAAGA--GT-TGGCAA-TGA-G-ACAA--T-C-ATTG---T----C-------GT--T 272 Query 299 TGGATCATCGGAAGAACAATAGATGCGTTGTTGTGATGGGAAGAATAGATGAGGAGATGT 358 ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | Sbjct 273 -GGATCATCGGAGGAACTATAGATGCGTTGTTGTGATGGGAAGAATCGATGAGGAGATTT 331 Query 359 CTTGTGATGATGATGATGAGTTTCAAGAAGAAGACTCTTTTCTTGATTATGGTAATTGCG 418 |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct 332 CTTGTGATGATGATGA-G--TTTCAAGAAGAAGACTCTTTTCTTGATTATGGTAAATGCG 388 Query 419 AGATTCTTACAAAAGAAA-TAGAAAAACCATC 449 ||||| |||||||| ||| ||||||||||||| Sbjct 389 AGATTTTTACAAAAAAAAATAGAAAAACCATC 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17627882118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5