BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49840.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485343 jgi|Araly1|485343|fgenesh2_kg.5__1335__AT3G49840.1 2209 0.0
> Ahg485343 jgi|Araly1|485343|fgenesh2_kg.5__1335__AT3G49840.1
Length=1695
Score = 2209 bits (1196), Expect = 0.0
Identities = 1538/1698 (91%), Gaps = 43/1698 (3%)
Strand=Plus/Plus
Query 15 aaaaaa-ca-aaacccagaaaaaTCGATGAGTGACTCATCATCAGTCATTGTCCGAAGCT 72
|||||| || |||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 21 AAAAAACCAGAAACCCAGAAAAATCGATGAGTGA--C-TCATCAGTCTTTGTCCGAAGCT 77
Query 73 CAAATTTCATTGTCGTGATTCTCTTCCTCAACCTCGTCACTTTCTTCTCCCTTGTCTCCT 132
|| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 78 CACATTTCATTGTCGTGATTCTCTTCCTCAACCTCTTGACTTTCTTCTCCGTTGTCTCCT 137
Query 133 CCAATGAACTTGTCTTTGCTGTGGGTGAAACTGGTTCACTACAAGTGACTCCAAGAACAG 192
|| |||||||| || | | ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 138 CCGATGAACTTTTCGTCGTTGTGGATGAAACTGGTTCACTACAAGTAACTCCAAGAACAG 197
Query 193 AGGTGATATATTCACCTGGTCTGAAACGAGGTATAACATCGATATGTGAGAGATTACATA 252
|||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 198 AGGTGATAGATT---C---TCT------TGGTATAACATCGATATGTGAGAGATTACATA 245
Query 253 TCCATGGATTACAAAGAAGACTTGAGCACATTGATAGATATGCACATTCACTAAAGTTGA 312
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 246 TCCATGGATTACAAAGAAGACTTAAGCACATTGATAGATATGCACACTCACTAAAGTTGA 305
Query 313 CTCTTTTGAGTAATAATGCTTCCAACAGTATCGACGTTTGCTTCCACAGGAATTCGTCGC 372
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 306 CCCTTTTGAGTAATAATGCTTCCAACAGTATAGACGTTTGTTTCCACAGGAATTCGTCGC 365
Query 373 GTGCAATTGGAATGTGTCCTGATAATCAGTGGAAGAGAGTGTCCAAAGGGTTACCTTGGG 432
|||||||||||||||||||| || ||||||||||| |||||||||||||||| | ||||
Sbjct 366 GTGCAATTGGAATGTGTCCTCATGGTCAGTGGAAGAAAGTGTCCAAAGGGTTATCATGGG 425
Query 433 TTGGGATAATGTCACCTTTTGACTATAAGATTCTTGATATAAGAACATTTGGTGGCTCAT 492
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct 426 TTGGGATAATGTCACCTTTTGACTCTAAGATTCTTGATATAAGAGCATTTGGTGGCTCGT 485
Query 493 CTAATGTCAGCACCGTGGAGTTGGT-TGCTAAACAAGAGTTTTTCATATACCGGATTGTG 551
|||| |||| |||| ||||| | || ||||||||||||||||||||| |||||||||||
Sbjct 486 CTAAAGTCATCACCTTGGAGCT-GTCTGCTAAACAAGAGTTTTTCATGTACCGGATTGTT 544
Query 552 TTTTTAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTTGCG 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 545 TTTTTAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTAGTG 604
Query 612 TTTTACTATATCGGTGCAATGTCTATTGGGATTGTCATTCTTGTAACTCTTATCATTAAT 671
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 605 TTTTACTATATTGGTGCAATGTCTATTGGGATTATCATTCTTGTAACTCTTATCATTAAT 664
Query 672 CAGGGGATAAAGCGTCTACCAACTAGAGGGAAGAGTCGTTTTCAGTTATTTTTCTACTCG 731
||||||||||||||||| ||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 665 CAGGGGATAAAGCGTCTCCCAACCGGAGGGAAGAGTCGGTTTGAGTTATTTCTCTACTCG 724
Query 732 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAGTTCAAGATTTG 791
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 725 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAATTCAAGATCTG 784
Query 792 CTAATGCAGATAGAAATCAGTGAAGATTTGTACATCCCTCTGGCGATTCTTTTGGTTGTG 851
||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 785 CTAATGCAGATAGGAATCAGTGAAGATTTGTATATCCCTCTGGCGATTGTTTTGGTTGTG 844
Query 852 TTTGTATTTATGTTGGGAGCGTGGTCAGGATTTTGGACTGTCAAGAAATTTGTTGTGACA 911
|||| | ||||||||||||| |||||||||||||||| ||| ||||||||||||| |||
Sbjct 845 TTTGCAATTATGTTGGGAGCATGGTCAGGATTTTGGATTGTTAAGAAATTTGTTGCGACT 904
Query 912 AAAGATGGTTCTGTTGACATTAGTACATCAATCTTTGTCTCTTGGTCCATCCGAGCTTTT 971
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 905 AAAGATGGTTCTATTGACATTGGTACAACAATCTTTGTCTCTTGGTCCATCCGTGCTTTT 964
Query 972 GCTGTGGCTCTGATCCTTCAGAGCTCTTTAGATCCATTACTTGCTGGAGGAGCGTTGATA 1031
||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 965 GCTGTGGCTCTGATCCTTCAGAGCTCTGTAGATCCCTTGCTTGCTGGAGGAGCGTTGATT 1024
Query 1032 ACTGGAATTCTCATCTCATTGATTCTAAAGAGTATTAGCAGAAAGCTGTTAGCTCAAAGA 1091
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1025 ACTGGAATTCTCATCTCATCGATTCTAAAGAGTATCAGCAGAAAGCTGTTAGCTCAAAGA 1084
Query 1092 ATATATGAGCAAGATGATGAAACTGAGAGTTGTAGCCCCGGCTTGATCCATGCTACCTCG 1151
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1085 ATCTATGAGCAAGAAGATGAAACTGAGAGTTGTAGCCCCGGCTTAATCCATGCTACTTCG 1144
Query 1152 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGAAGT-TGAGGACAGTACCATTATCTGA 1210
|||||||||||||||||||||||||||||||||| || | |||||||||||| | |||||
Sbjct 1145 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGATGTCT-AGGACAGTACCACTGTCTGA 1203
Query 1211 GTCAGATATCTTTCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGGAAGCTAACGAA 1270
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1204 TTCAGATATATTCCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGAAAGCTAACGAA 1263
Query 1271 GGAAGAGTTGCAAAAATTCACTAAAGAGAGCACGGAAAATGCATTGAAGGAATTGGTTTC 1330
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1264 TGAAGAGTTGGAAAAGTTCACTAAAGAGAGCACGGAAAAGGCATTGAAGGAATTGGTTTC 1323
Query 1331 TTCACCTGGTTTTGGCGAATGGGCGGTGAAAAATGCTAAAAGAATCACTGTAAATCCGAT 1390
|||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||||| |
Sbjct 1324 TTCACCCGGTTTCGGCGAATGGGCGGTGAAAAATGCTACAAGAATTAATGTAAATCCCTT 1383
Query 1391 AAAGGAATCGTCAAGTAAATAGGGT-GATACTG-TTAAGCGCAGAAGAAGGTTCCTCTGG 1448
|||| ||||||| ||||| | | | | ||| | |||||||| ||||| |||||||||||
Sbjct 1384 AAAGAAATCGTCCAGTAAGTTGACTTG-TAC-GATTAAGCGCCGAAGATGGTTCCTCTGG 1441
Query 1449 TTCTGAAAAGCAAGCAGCTAGGGGAACTTCT-GAACCAGTCGGAGAGTGTAGTAGGTTGC 1507
||||||||| ||||||||||||| ||||| | ||||||||||| ||||||||||||||||
Sbjct 1442 TTCTGAAAACCAAGCAGCTAGGGTAACTTTTTGAACCAGTCGGTGAGTGTAGTAGGTTGC 1501
Query 1508 TTGTGAACAAAGCAACAAGCCTTGCTT-ATATA-T-A---GTC-T-TC-TGGAAAAGAAC 1558
|| |||| ||||||||||||||||||| ||||| | | || | | |||||||||||
Sbjct 1502 TTCTGAATAAAGCAACAAGCCTTGCTTTATATAGTTATATGTAATGTTGTGGAAAAGAAC 1561
Query 1559 TAATGAGCAAGGC-GAAAAAGTTGAGAGATTAACTTCTAAATCAACAAAATGTAACCTTT 1617
||| | ||| || ||||| |||||| |||| || || ||| |||||| ||||||||
Sbjct 1562 CAATCAACAAAGCCGAAAA-GTTGAGGGATTTT-TT-TAG-TCACCAAAATATAACCTTT 1617
Query 1618 GACATAAATTGATATTGACCAATAA-GATCATACGTTTCCATGTGTGT--AGTCATCAAT 1674
||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||| |||
Sbjct 1618 GACATAAATTGATCTTGACCAATAAAGATTATACGTTTCCATGTGTGTGTAGTCATTAAT 1677
Query 1675 GATGTGAAACTCAATACT 1692
||||||||||||||||||
Sbjct 1678 GATGTGAAACTCAATACT 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5