BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49840.1 Length=1768 Score E Sequences producing significant alignments: (Bits) Value Ahg485343 jgi|Araly1|485343|fgenesh2_kg.5__1335__AT3G49840.1 2209 0.0 > Ahg485343 jgi|Araly1|485343|fgenesh2_kg.5__1335__AT3G49840.1 Length=1695 Score = 2209 bits (1196), Expect = 0.0 Identities = 1538/1698 (91%), Gaps = 43/1698 (3%) Strand=Plus/Plus Query 15 aaaaaa-ca-aaacccagaaaaaTCGATGAGTGACTCATCATCAGTCATTGTCCGAAGCT 72 |||||| || |||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 21 AAAAAACCAGAAACCCAGAAAAATCGATGAGTGA--C-TCATCAGTCTTTGTCCGAAGCT 77 Query 73 CAAATTTCATTGTCGTGATTCTCTTCCTCAACCTCGTCACTTTCTTCTCCCTTGTCTCCT 132 || |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 78 CACATTTCATTGTCGTGATTCTCTTCCTCAACCTCTTGACTTTCTTCTCCGTTGTCTCCT 137 Query 133 CCAATGAACTTGTCTTTGCTGTGGGTGAAACTGGTTCACTACAAGTGACTCCAAGAACAG 192 || |||||||| || | | ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 138 CCGATGAACTTTTCGTCGTTGTGGATGAAACTGGTTCACTACAAGTAACTCCAAGAACAG 197 Query 193 AGGTGATATATTCACCTGGTCTGAAACGAGGTATAACATCGATATGTGAGAGATTACATA 252 |||||||| ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 198 AGGTGATAGATT---C---TCT------TGGTATAACATCGATATGTGAGAGATTACATA 245 Query 253 TCCATGGATTACAAAGAAGACTTGAGCACATTGATAGATATGCACATTCACTAAAGTTGA 312 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 246 TCCATGGATTACAAAGAAGACTTAAGCACATTGATAGATATGCACACTCACTAAAGTTGA 305 Query 313 CTCTTTTGAGTAATAATGCTTCCAACAGTATCGACGTTTGCTTCCACAGGAATTCGTCGC 372 | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 306 CCCTTTTGAGTAATAATGCTTCCAACAGTATAGACGTTTGTTTCCACAGGAATTCGTCGC 365 Query 373 GTGCAATTGGAATGTGTCCTGATAATCAGTGGAAGAGAGTGTCCAAAGGGTTACCTTGGG 432 |||||||||||||||||||| || ||||||||||| |||||||||||||||| | |||| Sbjct 366 GTGCAATTGGAATGTGTCCTCATGGTCAGTGGAAGAAAGTGTCCAAAGGGTTATCATGGG 425 Query 433 TTGGGATAATGTCACCTTTTGACTATAAGATTCTTGATATAAGAACATTTGGTGGCTCAT 492 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | Sbjct 426 TTGGGATAATGTCACCTTTTGACTCTAAGATTCTTGATATAAGAGCATTTGGTGGCTCGT 485 Query 493 CTAATGTCAGCACCGTGGAGTTGGT-TGCTAAACAAGAGTTTTTCATATACCGGATTGTG 551 |||| |||| |||| ||||| | || ||||||||||||||||||||| ||||||||||| Sbjct 486 CTAAAGTCATCACCTTGGAGCT-GTCTGCTAAACAAGAGTTTTTCATGTACCGGATTGTT 544 Query 552 TTTTTAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTTGCG 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 545 TTTTTAATCATGGGGATAGTGTTACTGAGTTTGGCTTCTAGACTTAGCAAATCAGTAGTG 604 Query 612 TTTTACTATATCGGTGCAATGTCTATTGGGATTGTCATTCTTGTAACTCTTATCATTAAT 671 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 605 TTTTACTATATTGGTGCAATGTCTATTGGGATTATCATTCTTGTAACTCTTATCATTAAT 664 Query 672 CAGGGGATAAAGCGTCTACCAACTAGAGGGAAGAGTCGTTTTCAGTTATTTTTCTACTCG 731 ||||||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||| Sbjct 665 CAGGGGATAAAGCGTCTCCCAACCGGAGGGAAGAGTCGGTTTGAGTTATTTCTCTACTCG 724 Query 732 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAGTTCAAGATTTG 791 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 725 TCTATGATTGGTGTGGGAGGTTACTTTCTTCAATACATACGCGGTTTAATTCAAGATCTG 784 Query 792 CTAATGCAGATAGAAATCAGTGAAGATTTGTACATCCCTCTGGCGATTCTTTTGGTTGTG 851 ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 785 CTAATGCAGATAGGAATCAGTGAAGATTTGTATATCCCTCTGGCGATTGTTTTGGTTGTG 844 Query 852 TTTGTATTTATGTTGGGAGCGTGGTCAGGATTTTGGACTGTCAAGAAATTTGTTGTGACA 911 |||| | ||||||||||||| |||||||||||||||| ||| ||||||||||||| ||| Sbjct 845 TTTGCAATTATGTTGGGAGCATGGTCAGGATTTTGGATTGTTAAGAAATTTGTTGCGACT 904 Query 912 AAAGATGGTTCTGTTGACATTAGTACATCAATCTTTGTCTCTTGGTCCATCCGAGCTTTT 971 |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 905 AAAGATGGTTCTATTGACATTGGTACAACAATCTTTGTCTCTTGGTCCATCCGTGCTTTT 964 Query 972 GCTGTGGCTCTGATCCTTCAGAGCTCTTTAGATCCATTACTTGCTGGAGGAGCGTTGATA 1031 ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| Sbjct 965 GCTGTGGCTCTGATCCTTCAGAGCTCTGTAGATCCCTTGCTTGCTGGAGGAGCGTTGATT 1024 Query 1032 ACTGGAATTCTCATCTCATTGATTCTAAAGAGTATTAGCAGAAAGCTGTTAGCTCAAAGA 1091 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1025 ACTGGAATTCTCATCTCATCGATTCTAAAGAGTATCAGCAGAAAGCTGTTAGCTCAAAGA 1084 Query 1092 ATATATGAGCAAGATGATGAAACTGAGAGTTGTAGCCCCGGCTTGATCCATGCTACCTCG 1151 || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1085 ATCTATGAGCAAGAAGATGAAACTGAGAGTTGTAGCCCCGGCTTAATCCATGCTACTTCG 1144 Query 1152 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGAAGT-TGAGGACAGTACCATTATCTGA 1210 |||||||||||||||||||||||||||||||||| || | |||||||||||| | ||||| Sbjct 1145 TTTGCTTCTCCTCTTCCTAGAGGTTCCAACAAGATGTCT-AGGACAGTACCACTGTCTGA 1203 Query 1211 GTCAGATATCTTTCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGGAAGCTAACGAA 1270 |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1204 TTCAGATATATTCCCTTCTTCATTCCACAAAACACCAGAAGGGAGAAGAAAGCTAACGAA 1263 Query 1271 GGAAGAGTTGCAAAAATTCACTAAAGAGAGCACGGAAAATGCATTGAAGGAATTGGTTTC 1330 ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1264 TGAAGAGTTGGAAAAGTTCACTAAAGAGAGCACGGAAAAGGCATTGAAGGAATTGGTTTC 1323 Query 1331 TTCACCTGGTTTTGGCGAATGGGCGGTGAAAAATGCTAAAAGAATCACTGTAAATCCGAT 1390 |||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||||| | Sbjct 1324 TTCACCCGGTTTCGGCGAATGGGCGGTGAAAAATGCTACAAGAATTAATGTAAATCCCTT 1383 Query 1391 AAAGGAATCGTCAAGTAAATAGGGT-GATACTG-TTAAGCGCAGAAGAAGGTTCCTCTGG 1448 |||| ||||||| ||||| | | | | ||| | |||||||| ||||| ||||||||||| Sbjct 1384 AAAGAAATCGTCCAGTAAGTTGACTTG-TAC-GATTAAGCGCCGAAGATGGTTCCTCTGG 1441 Query 1449 TTCTGAAAAGCAAGCAGCTAGGGGAACTTCT-GAACCAGTCGGAGAGTGTAGTAGGTTGC 1507 ||||||||| ||||||||||||| ||||| | ||||||||||| |||||||||||||||| Sbjct 1442 TTCTGAAAACCAAGCAGCTAGGGTAACTTTTTGAACCAGTCGGTGAGTGTAGTAGGTTGC 1501 Query 1508 TTGTGAACAAAGCAACAAGCCTTGCTT-ATATA-T-A---GTC-T-TC-TGGAAAAGAAC 1558 || |||| ||||||||||||||||||| ||||| | | || | | ||||||||||| Sbjct 1502 TTCTGAATAAAGCAACAAGCCTTGCTTTATATAGTTATATGTAATGTTGTGGAAAAGAAC 1561 Query 1559 TAATGAGCAAGGC-GAAAAAGTTGAGAGATTAACTTCTAAATCAACAAAATGTAACCTTT 1617 ||| | ||| || ||||| |||||| |||| || || ||| |||||| |||||||| Sbjct 1562 CAATCAACAAAGCCGAAAA-GTTGAGGGATTTT-TT-TAG-TCACCAAAATATAACCTTT 1617 Query 1618 GACATAAATTGATATTGACCAATAA-GATCATACGTTTCCATGTGTGT--AGTCATCAAT 1674 ||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||| ||| Sbjct 1618 GACATAAATTGATCTTGACCAATAAAGATTATACGTTTCCATGTGTGTGTAGTCATTAAT 1677 Query 1675 GATGTGAAACTCAATACT 1692 |||||||||||||||||| Sbjct 1678 GATGTGAAACTCAATACT 1695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66353206790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5