BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49845.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485344 jgi|Araly1|485344|fgenesh2_kg.5__1336__AT3G49845.1 571 2e-162
> Ahg485344 jgi|Araly1|485344|fgenesh2_kg.5__1336__AT3G49845.1
Length=688
Score = 571 bits (309), Expect = 2e-162
Identities = 529/626 (85%), Gaps = 51/626 (8%)
Strand=Plus/Plus
Query 1 GCGAAGAAAAAGAAGCAA-AGAGTTCGTTATAAAGAAAGAAATAAACCCTCAGATAAGAG 59
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 1 GCGAAGAAAAAGAAGCAAGAGGGTTCGTTATAAAGAAAGAAATAAA-CCTCAGATAAGAG 59
Query 60 CATAACAGAGAAGAAGAAGAAGATGTCTTATCAAGACCCACAACATCCCGTTAGTGCTCC 119
|||||| || || | || ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 60 CATAAC--AG-AG-A-AA-AAGATGTCTTATCAAGATCCACAACATCCCGTTGGTGCTCC 113
Query 120 TCCTCCTCAAGGGT-A-T-CC----TC----C-TAA--GGAAGGATA-TCCACCAGCAGG 164
|||||||||| ||| | | || || | || || || | | |
Sbjct 114 TCCTCCTCAA-GGTAATTCCCAATTTCTTTTCAAAATTTTTTGGGTATTTTTGTTTCTTG 172
Query 165 GTATCCTCCACCA-GCAGGTTATCCTCCACCACAATATCCTCAAGC-GGGATATCCTCCA 222
||||||||| | | ||| |||||||| | |||||| | || ||||||||||||
Sbjct 173 GTATCCTCC-TAAGGAAGGATATCCTCCGGCTGGATATCCAC-CGCAAGGATATCCTCCA 230
Query 223 GCAGGTTATCCTCCACCGCAGCAAGGATACGGTCAAGGATATCCAGCACAAGGCTATCCT 282
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GCAGGTTATCCCCCACCACCGCAAGGATACGGTCAAGGATATCCAGCACAAGGCTATCCT 290
Query 283 CCACCGCAATATCCTCAAGGTCATCCACCACAATATCCTTATCAAGGTCCTCCACCACCG 342
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 291 CCACCGCAATATCCTCAAGGTCCTCCACCACAGTATCCTTATCAAGGTCCTCCACCGCCG 350
Query 343 CATTATGGTCAGGCTCCACCGAAAAATAAGAAAGATAAGAAGGATTCAGGAGGCTTCATG 402
|||||||||||||||||||| || || |||||||| ||| | ||||||| |||||||
Sbjct 351 CATTATGGTCAGGCTCCACCTAAGAAGAAGAAAGACAAG--G-ATTCAGG---CTTCATG 404
Query 403 GAAGGATGTTTGGCTATGCTCTGCTGTTGC-GTTCTCTTGGAAGCTTGCTTTTGATCGGA 461
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 405 GAAGGATGTTTGGCTATGCTCTGCTGTTGCTGT-CTCTTGGAAGCTTGCTTTTGATCGGA 463
Query 462 AGATGAGCTGATATTTGCCGTTGACCGTCTTGAGGATGCTATTCA---ATTTTGTCAAAC 518
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 464 GGATGAGCTGATATTTGCCGTTGACCGTCTCGAGGATGCCATTGTTGTATTTTGTCAAA- 522
Query 519 ATGTTAAAAAGACGTGTTTGAT-ATACATTTTAGATCTCTTCTTCTGGTT----ATGTGT 573
||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 523 ATGTTTAAAAGACGTGTTTGATCA-ACATTTTAGATCTCTTCTTCTGGTTGGTTATGTGT 581
Query 574 GTCC-----ACGTTTTGGGTTTGTTT 594
|||| |||||||||||||||||
Sbjct 582 GTCCTGTCCACGTTTTGGGTTTGTTT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5