BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49850.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485345 jgi|Araly1|485345|fgenesh2_kg.5__1337__AT3G49850.1 1594 0.0
> Ahg485345 jgi|Araly1|485345|fgenesh2_kg.5__1337__AT3G49850.1
Length=1259
Score = 1594 bits (863), Expect = 0.0
Identities = 1125/1243 (91%), Gaps = 52/1243 (4%)
Strand=Plus/Plus
Query 81 TTTCAAACTTTGATCCATGACACTCTCCATAGCTTCCTCTCTCATTCCCTTCAGCTTTCT 140
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| || |
Sbjct 24 TTTCAAAATTTGATCCATGTCACTCTCCATAGCTTCCTCTCTCATTCTCTTCAGCGTTAT 83
Query 141 CAGAGAATTGAAGTCGAGACATTAGAAgtgtttgttgtgtgtgtgtgtgtgtTTCTATAG 200
||||||||||||||||||||||||||| ||| | ||| ||| ||||||||| ||
Sbjct 84 CAGAGAATTGAAGTCGAGACATTAGAA------GTT-T-TGT-TGT-TGTGTTTCTGGAG 133
Query 201 AATTTTTGAATTTTGTGATAAAATTGTGTGAATGGGAGCTCCAAAGCTGAAGTGGACACC 260
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 134 AAGTTTTGAATTTTGTGATAAAATTGTGTCAATGGGAGCTCCAAAGCAAAAGTGGACACC 193
Query 261 AGAAGAAGAAACAGCTCTTAAAGCTGGAGTACTTAAACATGGAACTGGAAAATGGCGTAC 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 AGAAGAAGAAACAGCTCTTAAAGCTGGAGTGCTTAAACATGGAACTGGAAAATGGCGTAC 253
Query 321 CATTCTCTCAGATCCTGTGTATAGCACAATTCTGAAGTCTCGTTCTAATGTGGATCTCAA 380
||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 254 CATTCTCTCAGATCCTGAGTATAGCTCAATTTTGAAGTCTCGTTCCAATGTGGATCTCAA 313
Query 381 GGACAAATGGAGAAATATAAGTGTAACAGCTTTATGGGGATCTAGGAAGAAGGCTAAGCT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGACAAATGGAGAAATATAAGTGTAACAGCTTTATGGGGATCTAGGAAGAAGGCTAAGCT 373
Query 441 TGCTCTTAAAAGAACTCCTTTGTCGGGTAGTAGGCAAGACGATAACGCTACAGCTATTAC 500
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 374 AGCTCTTAAAAGAACTCCTTTGTTGGGTTCTAGGCAAGACGATAACGCTACAGCTATTAC 433
Query 501 CATTGTGTCTTTAGCTAATGGTGATGTAGGAGGACAACAGATTGATGCACCATCTCCTCC 560
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 434 CATTGTGTCTTTAGCTAATGGTGATGGAGGAGGACAACAGATTTATGCACCATCTCCTCC 493
Query 561 TGCAGGTTCTTGTGAACCTCCAAGACCTTCTACAAGTGTGGATAAGATTATATTGGAGGC 620
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 494 TGCAGGTTCTTGTGAACCACCAAGACCTTCTACAAGTGTGGATAAGATTATACTGGAGGC 553
Query 621 TATTACCAGCTTGAAGAGACCATTTGGTCCTGACGGAAAGTCGATCTTGATGTATATAGA 680
||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 554 CATTACCAACTTGAAGAGACCGTTTGGTCCTGACGGGAAGTCGATCTTGATGTATATAGA 613
Query 681 GGAGAATTTCAAGATGCAACCGGATATGAAACGGCTTGTGACTTCAAGGCTGAAGTATTT 740
||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||
Sbjct 614 GGAGAATTTCAAGATGCAACCAGATATGAAACGGCTTGTGACGTCAAGACTAAAGTATTT 673
Query 741 GACAAATGTTGGAACATTAGTTAAGAAAAAGCACAAATACAGGATTTCTCAGAATTATAT 800
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 674 GACAAATGTTGGAACATTAGTTAAGAAAAAGCACAAATACAGGATTTCTCCGAATTACAT 733
Query 801 GGCTGAAGGAG-AAGGACAAAGGTCTCCTCAACTCTTGTTGGAAGGAAACAAGGAAAACA 859
|||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 734 GGCTGAAGCAGCAAG-ACAAAGGTCTCCTCAACTCTTATTGGAAGGAAACAAGGAAAATA 792
Query 860 CTCCGAAACCGGAGGAGAATGGCGTCAAAAATCTTACTAAATCCCAAGTAGGTGGAGAAG 919
|||||||||| ||||||||||||||||||||||||| | | | || | || |
Sbjct 793 CTCCGAAACCCGAGGAGAATGGCGTCAAAAATCTTA-TGA-T---AA-T-GG-G------ 838
Query 920 TTATGATAATGGGTATGACAGAAAAAGAAGCTGCTGCAGCAGCTGCAAGAGCTGTGGCAG 979
| |||| | | | | | || |||||||||||||| ||||||||||| |||||||
Sbjct 839 T-ATGACA--G---A--A-A-AA---GAAGCTGCTGCAGCCGCTGCAAGAGCCGTGGCAG 885
Query 980 AAGCAGAATTTGCAATGGCAGAAGCTGAAGAAGCAGCAAGAGAGGCAGATAAAGCAGAAG 1039
|||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 886 AAGCAGAATTCGCAATCGCAGAAGCTGAAGAAGCAGCAAGAGAGGCAGATGAAGCAGAAG 945
Query 1040 CCGAAGCTGAAGCTGCCCATATTTTTGCAAAAGCGGCGATGAAAGCTGTGAAGTATAGAA 1099
|| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
Sbjct 946 CCAAAGCTGAAGCTGCCCATATATTTGCAAAAGCGGCGATGAAATCTTTGAAGTATAGGA 1005
Query 1100 TGCATAGCCAAACTCGGTAAGAATTAAGAAAA-TCATTGATGTTGTATCGGTTGATATAT 1158
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 1006 TGCATAGCCAAACTCGGTAAGAATTAAGAAAAATCGTTGATGTTGTATCGGTTGATAT-T 1064
Query 1159 CTTCAATTCTTCATGTTATGT-CAAGTTTCGATCTTGCATCGAAATCAACATTTTACAAT 1217
| | || || || | || | || || |||||| |||| ||| ||| ||||||||||
Sbjct 1065 AT-CG-TT-TTGATAT-ATCTTCATGT---GATCTT-CATCTAAAGCAATATTTTACAAT 1116
Query 1218 CGCCGCAGTGTTTTTAGT-CAGTAACAGTGTCTTCTAACTCAGATGATTATGTAAAACCT 1276
||| ||||||||||| || |||||||||||||||||||||||||| || || ||||||||
Sbjct 1117 CGCTGCAGTGTTTTT-GTTCAGTAACAGTGTCTTCTAACTCAGATAATCATTTAAAACCT 1175
Query 1277 GTTCCTTCTCTTGCTTCTGTTGATCTGGTTTTGTTAGTAACTT 1319
||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1176 GTTCCTTTTCTTGTTTCTGTTGATCTGGTTTTGTTAGTAACTT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5