BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49860.1
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485347 jgi|Araly1|485347|fgenesh2_kg.5__1339__AT3G49870.1 793 0.0
Ahg485346 jgi|Araly1|485346|fgenesh2_kg.5__1338__AT3G49860.1 671 0.0
> Ahg485347 jgi|Araly1|485347|fgenesh2_kg.5__1339__AT3G49870.1
Length=855
Score = 793 bits (429), Expect = 0.0
Identities = 605/687 (88%), Gaps = 24/687 (3%)
Strand=Plus/Plus
Query 8 TCAATATGACTTTGCAGCCTAATCTTCAAGCAAAAGAAATGGAGCTTTCTTTGGTAGGAC 67
||||| || ||| | ||||| ||||||||| ||||||||||||| |||||| ||||||
Sbjct 64 TCAAT-TGGCTTCGTAGCCTCTTCTTCAAGC--AAGAAATGGAGCTATCTTTGATAGGAC 120
Query 68 TTCAAAATTCAGGAAAGACATCACTTGTTAATGTTGTTGCAACTGGTGAATACAGTGAAG 127
| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 121 TCCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTGAAG 180
Query 128 ACATGATTCCTACGGTCGGGTTTAACATGAGGAAAGTGACAAAAGAAAATGTTGCAATCA 187
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 181 ACATGATTCCCACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCA 240
Query 188 GACTATGGGATCTTGGTGGTCAACCAAGATTCCGCTGCATGTGGGAACGTTACTGTCGCG 247
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTCGCG 300
Query 248 CTGTTTCTATGATTGTGTACGTAGTTGATGCTGCAGATACTGAAAACTTGAGTGTCTCGA 307
|||||||| |||||||| |||||||||||||||||| |||| ||| | ||||||||||
Sbjct 301 CTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTCAGTGTCTCGA 360
Query 308 GAAGTGAACTCCATGATTTGTTGAGCAATG-CTTCGCTTATTGGTATTCCTCTTTTGGTT 366
|||||||||||||||| |||||||||| | ||||||||| |||||| |||||| |||||
Sbjct 361 AAAGTGAACTCCATGATCTGTTGAGCAA-GACTTCGCTTAATGGTATCCCTCTTCTGGTT 419
Query 367 CTTGGGAACAAGATTGACATACATGGAGCTCTTTCCAAAGAAGCCTTGACAGAAGAAATG 426
||||||||||||||||||| || ||||||||| |||||||||||||| ||||| ||||||
Sbjct 420 CTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAATG 479
Query 427 GGGCTTA-GT-TCGGTTACA-AGTAGAGAAGTCTGCTGTCTCATGATATCCTGCAAGAAC 483
||||||| || || ||||| | |||||||||||| ||| |||||||||||||||| |||
Sbjct 480 GGGCTTACGTCTC--TTACAGA-TAGAGAAGTCTGTTGTTTCATGATATCCTGCAAAAAC 536
Query 484 CCTACCACCATTGATCA-GCTCACTGATTGGCTTGTAAATCACTCAAAATCAAAGAACTA 542
|||| | ||||||||| | ||| ||||||||| ||||| || |||||||||||||||||
Sbjct 537 TCTACAAACATTGATCAAG-TCATTGATTGGCTCGTAAAGCATTCAAAATCAAAGAACTA 595
Query 543 AACTTCAACAAGAACATCATATGTTCTCTCTTCTTGATCTTCTTACTCGTCCTCTGTTGT 602
||||||| ||||||||| || | |||||||||||||||||||||| || |||| | ||||
Sbjct 596 AACTTCACCAAGAACAT-AT-TATTCTCTCTTCTTGATCTTCTTAGTCTTCCTGTATTGT 653
Query 603 CTGGTTAATGATGATGATGAGTCTTGAA--CTAATTT---CGCGTGAAACAAGAGTTTGT 657
|||||| ||||||||| ||| | ||||| | ||||| || ||||| |||||||||||
Sbjct 654 CTGGTTGATGATGATGGTGATTGTTGAAGAC-AATTTTTTCGTGTGAATCAAGAGTTTGT 712
Query 658 CTTTATTTGTC-T-T-CTGTCTCACCT 681
||||||||||| | | ||||||| |||
Sbjct 713 CTTTATTTGTCGTCTTCTGTCTCTCCT 739
> Ahg485346 jgi|Araly1|485346|fgenesh2_kg.5__1338__AT3G49860.1
Length=604
Score = 671 bits (363), Expect = 0.0
Identities = 498/559 (89%), Gaps = 25/559 (4%)
Strand=Plus/Plus
Query 40 AAAGAAATGGAGCTTTCTTTGGTAGGACTTCAAAATTCAGGAAAGACATCACTTGTTAAT 99
|||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 1 AAAGAAATGGAGATTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAAT 60
Query 100 GTTGTTGCAACTGGTGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGG 159
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTTGCAACTGATGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGG 120
Query 160 AAAGTGACAAAAGAAAATGTTGCAATCAGACTATGGGATCTTGGTGGTCAACCAAGATTC 219
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AAAGTGACAAAAGAAAATGTTGCAATCAGGCTATGGGATCTTGGTGGTCAACCAAGATTC 180
Query 220 CGCTGCATGTGGG-A-A-CGTT--ACT---GTCGCGCTGTT-TCTATGATTG-T-GTACG 268
|||| |||||||| | | | || ||| || | |||| ||| | |||| | | |
Sbjct 181 CGCTTCATGTGGGTACATC-TTAGACTCAGGTTTCTTTGTTATCT-TTATTGCTCG-GCT 237
Query 269 TAGTTGATGCTGCAGATACTGAAAACTTGAGTGTCTCGAGAAGTGAACTCCATGATTTGT 328
|| || | | ||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 238 TA-TTCACAAT-CAGATCCTGACAACTTAAGTGTCTCGAGAAGTGAACTCCATGATTTGT 295
Query 329 TGAGCAATG-CTTCGCTTATTGGTATTCCTCTTTTGGTTCTTGGGAACAAGATTGACATA 387
||||||| | ||||||||| ||||| |||||| |||||||||||||||||||||||| |
Sbjct 296 TGAGCAA-GACTTCGCTTAACGGTATCCCTCTTATGGTTCTTGGGAACAAGATTGACAAA 354
Query 388 CATGGAGCTCTTTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGGTTACA-AG 446
| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 355 CCTGGAGCTCTGTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGCTTACAGA- 413
Query 447 TAGAGAAGTCTGCTGTCTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGCTCAC 506
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 414 TAGAGAAGTCTGCTGTTTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGGTCAT 473
Query 507 TGATTGGCTTGTAAATCACTCAAAATCAAAGAACTAAACTTCAACAAGAACATCATATGT 566
||||||| | ||||| ||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 474 TGATTGGGTCGTAAACCACTCAAAATCAAAGAACTAAACTTCACCAAGAACAT-ATAT-T 531
Query 567 TCTCTCTTCTT-GATCTTC 584
|||||||||| | |||||
Sbjct 532 -CTCTCTTCTTAG-TCTTC 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25046756469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5