BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49870.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485347 jgi|Araly1|485347|fgenesh2_kg.5__1339__AT3G49870.1 1284 0.0
Ahg496840 jgi|Araly1|496840|fgenesh2_kg.8__2656__AT5G67560.1 693 0.0
Ahg485346 jgi|Araly1|485346|fgenesh2_kg.5__1338__AT3G49860.1 662 0.0
> Ahg485347 jgi|Araly1|485347|fgenesh2_kg.5__1339__AT3G49870.1
Length=855
Score = 1284 bits (695), Expect = 0.0
Identities = 810/862 (94%), Gaps = 21/862 (2%)
Strand=Plus/Plus
Query 75 CAGGCGGATCTGTTTGTCGGAGCTTTTGTGAATCATCATCATCAATGGGTTTGTTGGAAG 134
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 CAGGCGGATCTGTTTGTCGGAGCTTTTGT---TCATCATCATCAATGGGTTTGTGGGAAG 57
Query 135 CTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCTTTGATAG 194
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 58 CTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATGGAGCTATCTTTGATAG 117
Query 195 GACTTCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTG 254
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GACTCCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTG 177
Query 255 AAGACATGATTCCTACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAA 314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGACATGATTCCCACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAA 237
Query 315 TCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTC 297
Query 375 GCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGT 434
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 298 GCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTCAGTGTCT 357
Query 435 CGAAAAGTGAACTCCATGATTTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTCG 494
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 358 CGAAAAGTGAACTCCATGATCTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTGG 417
Query 495 TTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAA 477
Query 555 TGGGACTTACATCACTTACAGATAGAGAAGTCTGCTGTTTCATGATATCATGCAAGAACT 614
|||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 478 TGGGGCTTACGTCTCTTACAGATAGAGAAGTCTGTTGTTTCATGATATCCTGCAAAAACT 537
Query 615 CTACCAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATTCAAAGTCGAAGAACTAAT 674
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 538 CTACAAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATTCAAAATCAAAGAACTAAA 597
Query 675 CTTCACCAAGAACATAT-ATTCTCTCTTCTTGATTCTTCTTAGTCTTCCTGTATTGTCTA 733
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 CTTCACCAAGAACATATTATTCTCTCTTCTTGAT-CTTCTTAGTCTTCCTGTATTGTCTG 656
Query 734 GTTGATGATGATGGTGA----------CAATTTTT-CGTGTGAAACAAGAGT--GTCTTT 780
||||||||||||||||| |||||||| |||||||| ||||||| ||||||
Sbjct 657 GTTGATGATGATGGTGATTGTTGAAGACAATTTTTTCGTGTGAATCAAGAGTTTGTCTTT 716
Query 781 ATTTTTCGCCTTCCGTCTCTCCTTCTTCTGCTGGTCTGGTCTTGTTTGGTCCTCCAGTCT 840
|||| ||| |||| |||||||||||| |||||||||||||||||||||| || ||| |
Sbjct 717 ATTTGTCGTCTTCTGTCTCTCCTTCTCCTGCTGGTCTGGTCTTGTTTGGACC---AGTAT 773
Query 841 TGTCTTTGTATATTAGATGTGGATTGTTTTTCTATTCCCAAGGCTTTGCAATTTTTGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 TGTCTTTGTATATTAGATGTGGATTGTTTTTCTATTCCCAAGGCTTTGCAATTTTGGAAA 833
Query 901 CACAAAAACATAAGTGTCCCaa 922
|||| ||| |||||||| |||
Sbjct 834 CACATTAACGTAAGTGTCTCAA 855
> Ahg496840 jgi|Araly1|496840|fgenesh2_kg.8__2656__AT5G67560.1
Length=996
Score = 693 bits (375), Expect = 0.0
Identities = 497/556 (89%), Gaps = 7/556 (1%)
Strand=Plus/Plus
Query 109 ATCAT-CATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCA 167
||||| ||| |||||||||| ||| ||| |||||||||||||||| |||||||||||||
Sbjct 131 ATCATAAATC-ATGGGTTTGTGGGATGCTCTTCTCAATTGGCTTCGCAGCCTCTTCTTCA 189
Query 168 AGCAAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAA 227
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 190 AGCAAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTTA 249
Query 228 ATGTTGTTGCAACTGGTGGATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGA 287
| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 250 ACGTTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTACGGTCGGATTCAACATGA 309
Query 288 GGAAAGTAACAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGAT 347
||||||| |||||||||| ||| |||||||| || |||||||| || |||||||| || |
Sbjct 310 GGAAAGTGACAAAAGGAAGTGTCACAATCAAGCTTTGGGATCTCGGGGGTCAACCTAGGT 369
Query 348 TCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTGTATGTAGTTGATG 407
||||||||||||||||||||||||| || ||||||| || |||||||||||||||||||
Sbjct 370 TCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTGTATGTAGTTGATG 429
Query 408 CTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTTGAGCAAGA 467
|||| |||||||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 430 CTGCTGATCCTGACAACCTCAGTGTCTCGAAGAGCGAACTCCATGATTTGTTGAGCAAGA 489
Query 468 CTTCGCTTAATGGTATCCCTCTTCTCGTTCTTGGGAACAAGATTGACAAACCTGGAGCTC 527
| || |||| ||||||||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct 490 CGTCCCTTAGTGGTATCCCTCTTCTAGTCCTTGGCAACAAAATCGACAAGCCTGGAGCTT 549
Query 528 TGTCCAAAGAAGC-CTTAACAGACGAAATGGGACTTACA-TCACTTACAGATAGAGAAGT 585
||||||||||||| || ||| || ||||||||||| | | ||||||||||||||||||||
Sbjct 550 TGTCCAAAGAAGCTCT-AACTGAGGAAATGGGACTCA-AGTCACTTACAGATAGAGAAGT 607
Query 586 CTGCTGTTTCATGATATCATGCAAGAACTCTACCAACATTGATCAAGTCATTGATTGGCT 645
||| || ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct 608 CTGTTGCTTCATGATATCTTGCAAGAACTCCACTAACATCGATCAAGTCATTGATTGGCT 667
Query 646 CGTAAAGCATTC-AAA 660
|||||||| || |||
Sbjct 668 TGTAAAGCACTCCAAA 683
> Ahg485346 jgi|Araly1|485346|fgenesh2_kg.5__1338__AT3G49860.1
Length=604
Score = 662 bits (358), Expect = 0.0
Identities = 491/553 (89%), Gaps = 17/553 (3%)
Strand=Plus/Plus
Query 171 AAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATG 230
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAGAAATGGAGATTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATG 61
Query 231 TTGTTGCAACTGGTGGATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGGA 290
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTGTTGCAACTGATGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGGA 121
Query 291 AAGTAACAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGATTCC 350
|||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 122 AAGTGACAAAAGAAAATGTTGCAATCAGGCTATGGGATCTTGGTGGTCAACCAAGATTCC 181
Query 351 GCAGCATGTGGG-A-A-CGTT--ACT---GTCGCGCTGTT-TCTGCCATTG-T-GTATGT 399
|| |||||||| | | | || ||| || | |||| ||| |||| | | | |
Sbjct 182 GCTTCATGTGGGTACATC-TTAGACTCAGGTTTCTTTGTTATCT-TTATTGCTCGGCT-T 238
Query 400 AGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTT 459
| || | | |||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 239 A-TTCACAAT-CAGATCCTGACAACTTAAGTGTCTCGAGAAGTGAACTCCATGATTTGTT 296
Query 460 GAGCAAGACTTCGCTTAATGGTATCCCTCTTCTCGTTCTTGGGAACAAGATTGACAAACC 519
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 297 GAGCAAGACTTCGCTTAACGGTATCCCTCTTATGGTTCTTGGGAACAAGATTGACAAACC 356
Query 520 TGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAATGGGACTTACATCACTTACAGATAG 579
|||||||||||||||||||||||| ||||| |||||||| |||| || |||||||||||
Sbjct 357 TGGAGCTCTGTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGCTTACAGATAG 416
Query 580 AGAAGTCTGCTGTTTCATGATATCATGCAAGAACTCTACCAACATTGATCAAGTCATTGA 639
|||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||
Sbjct 417 AGAAGTCTGCTGTTTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGGTCATTGA 476
Query 640 TTGGCTCGTAAAGCATTCAAAGTCGAAGAACTAATCTTCACCAAGAACATATATTCTCTC 699
|||| ||||||| || ||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 477 TTGGGTCGTAAACCACTCAAAATCAAAGAACTAAACTTCACCAAGAACATATATTCTCTC 536
Query 700 TTCTTGATTCTTC 712
||||| | |||||
Sbjct 537 TTCTT-AGTCTTC 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5