BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49880.1
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937818 jgi|Araly1|937818|scaffold_502009.1 2211 0.0
Ahg332819 jgi|Araly1|332819|fgenesh1_pm.C_scaffold_8002162 917 0.0
> Ahg937818 jgi|Araly1|937818|scaffold_502009.1
Length=1439
Score = 2211 bits (1197), Expect = 0.0
Identities = 1361/1441 (94%), Gaps = 7/1441 (0%)
Strand=Plus/Plus
Query 330 GATAAATCTTTGGAAACAAAGATGAGGGTGATGAAGAACAAACACAACAAGAAAGCAACG 389
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GATAAATCTTTGG-AATAAAGATGAGGGTGATGAAGAATAAACACAACAAGAAAGCAACG 59
Query 390 TTTTTGCGTTGTTCACCGTTTGGTTTAGTATCTACAGTTGTGGGATGTGTTTTCATGATT 449
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TTTTTACGTTGTTCACCGTTTGGTTTAGTATCTACAGTTGTGGGATGTGTTTTTATGATT 119
Query 450 CATTTAACCATGTTATATAGCAGAAGTTATAGTGTAGATCTTGATCTTTCACCTCAGTTA 509
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 120 CATTTCACCATGTTATATAGCAGAAGATATAGTGTAGATCTTGAAGTTTCACCTCAGTTA 179
Query 510 CTTATCCATCATCCGATTGTCCGTGAGCTCGAACGCGTTGAAGAAGAGAATATCCATATG 569
|||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 180 CTTATCCATCATCCTATTGTCCGTGAGCTCGAACACGCTGAAGAAGAGAATATTCATATG 239
Query 570 CCGCCTCCTAGGAAGCGTTCTCCTCGCGCTATCAAACGGAAACCAAAAACACCAACCACT 629
||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 240 CCGCCTCCTAGAAAGCGTTCTCCGCGAGCTATCAAACGGAAACCAAAAATACCAACCACT 299
Query 630 TTAGTCGAAGAGTTTCTCGACGAGAATTCACAGATTCGACATCtttttttCCCTGATATG 689
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 300 TTAGTCGAAGAGTTTCTTGACGAGAATTCTCAGATTCGCCATCTGTTTTTCCCTGATATG 359
Query 690 AAATCAGCTTTTGGTCCTACCAAGGAAGATACTAATGACACATCGCATTACTACTTCCCG 749
||||||||||||||||||||||||| | || |||||| ||||| |||||||||||||||
Sbjct 360 AAATCAGCTTTTGGTCCTACCAAGG--G-TAATAATGATACATCACATTACTACTTCCCG 416
Query 750 GGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGGCATTTTG 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGGCATTTTA 476
Query 810 TTTGATGACATATCAAAGGTTTACTATTGGTATGGTGAATATAAAGATGGACCAACTTAT 869
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTGATGAGATATCTAAGGTTTACTATTGGTATGGTGAATATAAAGATGGACCAACTTAT 536
Query 870 CTTTCTCACAAGAAAGGTGCTGCTAGAGTTGATATAATCGGTGTTGGATGTTACTCGTCG 929
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 537 CTTTCTCACAAGAAAGGTGCCGCTCGAGTTGATATAATCGGTGTTGGATGCTACTCGTCG 596
Query 930 AAAGATTTATGGACATGGAAAAACGAAGGTGTTGTATTAGCAGCCGAAGAAACAGATGAG 989
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 AAAGATTTATGGACATGGAAAAACGAAGGCGTTGTATTAGCAGCCGAAGAAACAGATGAG 656
Query 990 ACACATGACTTACACAAATCCAATGTTCTTGAGCGTCCTAAAGTGATATACAATTCAGAT 1049
|||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 657 ACACATGATTTACACAAATCCAATGTTCTAGAGCGCCCTAAAGTGATATACAATTCAGAA 716
Query 1050 ACAGGTAAGTACGTGATGTGGATGCATATCGACGATGCAAACTACACTAAAGCTTCGGTT 1109
||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 717 ACAAGTAAGTACGTGATGTGGATGCATATCGATGATGCAAACTACACGAAAGCTTCAGTT 776
Query 1110 GGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTACTTATACAGCAGATCGCCA 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 777 GGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTACTTATACAGCAGATCACCA 836
Query 1170 CACGGGTTTGATAGTAGAGACATGACAGTCTACAAAGACGATGATAACGTAGCCTACTTG 1229
|||||||| || |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 837 CACGGGTTCGACAGTAGAGACATGACAGTCTACAAAGACGATGATAACATCGCCTACTTG 896
Query 1230 ATATATTCATCAGAGGACAACAGCGTGCTGCATATCGGTCCCCTGACCGAGAATTACCTC 1289
|||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct 897 ATATATTCATCAGAGGACAACAGCGTACTACATATCGGTCCTCTAACCGAGAATTACCTC 956
Query 1290 GATGTGAAGCCGGTAATGAAGAGAATCATGGTGGGACAACACAGAGAAGCTCCGGCTATC 1349
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 GATGTGAAGCCGGTGATGAAGAGAATCATGGTGGGACAACACAGAGAAGCTCCTGCTATT 1016
Query 1350 TTCAAACATCAAAACACTTACTACATGATCACGTCTGGTTGCACCGGATGGGCACCAAAC 1409
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 TTCAAACACCAAAACACTTACTACATGATCACTTCTGGTTGCACCGGATGGGCACCAAAC 1076
Query 1410 GAAGCATTAGCTCATGCCGCTGAGTCGATAATGGGTCCGTGGGAGACATTAGGGAATCCA 1469
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1077 GAAGCTTTAGCTCATGCCGCTGAGTCGATAATGGGTCCATGGGAGACATTAGGGAATCCA 1136
Query 1470 TGTGTTGGCGGGAACAGTATTTTCCGTTCGACGACGTTTTTCGCGCAGAGCACGTTCGTG 1529
|||||||||||||||| ||||||||| || || |||||||||||||||||||| ||||||
Sbjct 1137 TGTGTTGGCGGGAACAATATTTTCCGGTCAACAACGTTTTTCGCGCAGAGCACATTCGTG 1196
Query 1530 ATTCCGTTACCAGGTGTTCCTGGTGTGTTTATATTTATGGCCGATAGGTGGAATCCGGCG 1589
|| || |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1197 ATACCATTACCAGGTGTTCCCGGTGTGTATATATTTATGGCGGATAGGTGGAATCCGGCG 1256
Query 1590 GATTTGCGAGATTCGAGATATTTGTGGTTACCGTTGATAGTTGGTGGACCGGCTGATCGT 1649
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1257 GATTTGAGAGATTCGAGATATTTATGGTTACCGTTGATAGTTGGTGGACCGGCTGATAGG 1316
Query 1650 CCTCTTGAGTATAGTTTCGGGTTTCCGATGTGGTCGAGAGTTTCTGTATATTGGCATAGA 1709
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1317 CCTCTTGAGTATAATTTCGGGTTTCCAATGTGGTCGAGAGTGTCTGTATATTGGCATAGA 1376
Query 1710 CAATGGCGGTTGCCTTCAGCAAGAGAGAAGAAGATTGCTTAGAGAAAAAGACAAAGCTTT 1769
||||||||||||||||||||||| ||||||||||||||||| | |||| ||| |||||||
Sbjct 1377 CAATGGCGGTTGCCTTCAGCAAGTGAGAAGAAGATTGCTTA-A-AAAA-GACTAAGCTTT 1433
Query 1770 T 1770
|
Sbjct 1434 T 1434
> Ahg332819 jgi|Araly1|332819|fgenesh1_pm.C_scaffold_8002162
Length=1419
Score = 917 bits (496), Expect = 0.0
Identities = 1005/1243 (81%), Gaps = 66/1243 (5%)
Strand=Plus/Plus
Query 516 CATCATCC-GATTGTCCGTGAGCTCG-AACGCGTTGAAGAAGAGAATATCC--A-TATGC 570
|||||||| | |||| ||||| || | || | |||||||||||| |||| | ||||
Sbjct 208 CATCATCCTG-TTGTTCGTGAACTTGTAA-GAGTTGAAGAAGAG---ATCCTGAGAATGC 262
Query 571 CGCCTCCTAGGAAGCGTTCTCCTCGCGCTA-TCAAACGGA-AACCA-AAAACACCAACCA 627
| || |||||||||||||||||||| ||| | ||||||| | | | ||||| | | ||
Sbjct 263 CCCCACCTAGGAAGCGTTCTCCTCGTACTAGT-AAACGGAGATCGAGAAAAC-CGATCC- 319
Query 628 CTTTAGTCGAAGAGTTTCTCGACGAGAATTCACAGATTCGACATCtttt-tttCCCTGAT 686
|| | || ||||||||||| |||||||| |||| || || |||||||| |||||| | |
Sbjct 320 CTATGGTTGAAGAGTTTCTTGACGAGAAGTCACCTATACGGCATCTTTTCTTTCCC-GGT 378
Query 687 AT-GAAA--TCAGCTTTTGGTCCTACCAAGGAAGAT-ACTAATGACACATCGCATTACTA 742
|| ||| | ||||||||||| ||||||| | || || || || ||| || ||
Sbjct 379 ATCAAAACCGCCGCTTTTGGTCCCACCAAGG-ATATGGGAAACGAGACCTCG---TATTA 434
Query 743 CTTCCCGGGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGG 802
|||||| |||| |||||||| ||||| ||||||||||| ||||||||||| || || ||
Sbjct 435 CTTCCCTGGGAAAATTTGGATGGACACTGAAGGGAATCCAATTCAAGCACATGGCGGAGG 494
Query 803 CATTTTGTTTGATGACATATC-AA-AGGTTTACTATTGGTATGGTGAATATAAAGATGGA 860
||| || |||| || | ||| || | | |||||||||||||| |||||||||||||||
Sbjct 495 GATTCTGCTTGACGAGAAATCTAACACG--TACTATTGGTATGGAGAATATAAAGATGGA 552
Query 861 CCAACTTATCTTTCTCACAAGAAAGGTGCTGCTAGAGTTGATATAATCGGTGTTGGATGT 920
|| ||||| | | ||||||||||||| | ||||||||||||||||| || ||||| |||
Sbjct 553 CCGACTTACCATGCTCACAAGAAAGGACCAGCTAGAGTTGATATAATAGGGGTTGGTTGT 612
Query 921 TACTCGTCGAAA-GATTTATGGACATGGAAAAACGAAGGTGTTGTATTAGCAGCCGAAGA 979
||||| || ||| || ||||||||||||||||| ||||| ||||| | | ||| |||||
Sbjct 613 TACTCTTC-AAAGGACTTATGGACATGGAAAAATGAAGGCATTGTACTCGGAGCTGAAGA 671
Query 980 AACAGATGAGACACATGACTTACACAAATCCAATGTTCTTGAGCGTCCTAAAGTGATATA 1039
|||| | |||| ||||| || || |||||||||||||||||||| || |||||||| ||
Sbjct 672 AACAAACAAGACCCATGATTTGCATAAATCCAATGTTCTTGAGCGACCCAAAGTGATCTA 731
Query 1040 CAATTCAGATACAG-GTAAGTACGTGATGTGGATGCATATCGACGATGCAAACTACACTA 1098
|||| | | |||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 732 CAATGAAAAGACAGAG-AAGTATGTGATGTGGATGCATATCGACGATGCAAACTACACTA 790
Query 1099 AAGCTTCGGTTGGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTA-CTTATAC 1157
||||||| |||||||||||||||||||||||||| |||||||| ||||| || || ||||
Sbjct 791 AAGCTTCAGTTGGTGTAGCCATTAGCGATAACCCGACAGGTCCTTTCGAGTATCT-ATAC 849
Query 1158 AGCAGATCG-CCACACGGGTTTGATAGTAGAGACATGACAGTCTACAAAGACGATGATAA 1216
|| | | || ||||||||||| |||||| | |||||||| |||| |||||| || |||
Sbjct 850 AGTAAA-CGTCCACACGGGTTCGATAGTCGGGACATGACTGTCTTCAAAGATGACGATGG 908
Query 1217 CG-TAGCCTACTTGATATATTCATCAGAGGACAACAGCGTGCTGCATATCGGTCCCCTGA 1275
| | || ||| |||||||||| || || | |||||||||||| ||||| || ||| | |
Sbjct 909 TGAT-GCTTACCTGATATATTCGTCTGAAGTCAACAGCGTGCTTCATATTGGACCCTTAA 967
Query 1276 CCGA-GAATTACCTCGATGTGA-AGCCGGTAATGAAGAGAATCATGGTGGGACAACACAG 1333
| || || |||||||||||||| | ||||| ||||||||| | |||||||||||||||||
Sbjct 968 CGGAAGA-TTACCTCGATGTGACA-CCGGTTATGAAGAGAGTAATGGTGGGACAACACAG 1025
Query 1334 AGAAGCTCCGGCTATCTTCAAACATCAAAACACTTACTACATGATCACGTC-TGGTTGCA 1392
|||||||| ||||||||||| |||| || | ||| |||||| |||| || |||| |||
Sbjct 1026 GGAAGCTCCAGCTATCTTCAAGTATCAGAATATTTATTACATGGTCACTTCCTGGT-GCA 1084
Query 1393 CCGGATGGGCACCAAACGAAGCATTAGCTCATGCCGCTGAGTCGATAATGGGTCCGTGGG 1452
| || ||||||||||| ||||| || |||||||| || || || |||||||| || ||||
Sbjct 1085 CTGGTTGGGCACCAAATGAAGCCTTGGCTCATGCGGCAGAATCTATAATGGGACCATGGG 1144
Query 1453 AGACATTAGGGAATCCATGTGTTGGCGGGAACAGTA-TTTTCCG-TTCGACGACGTT-TT 1509
||| ||| |||||||| ||| | || || |||| | ||||||| || || || || ||
Sbjct 1145 AGAAATTGGGGAATCCGTGTATCGGTGGTAACAA-AGTTTTCCGGTTA-ACAACATTCTT 1202
Query 1510 TCGCGCAGAGCACGT-TCGTGATTCCGTTACCAGGTGTTCCTGGTGTGTTTATATTTATG 1568
| ||||||||||| | | |||||||||||||| |||||||| |||| |||||||| |||
Sbjct 1203 T-GCGCAGAGCACTTAT-GTGATTCCGTTACCGGGTGTTCCCGGTGCATTTATATTCATG 1260
Query 1569 GCCGATAGGTGGAATCCGGCGGATTTGCGAGATTCGAGATATTTGTGGTTACCGTT-GAT 1627
|| ||||||||||| ||||| |||||||| ||||| |||||| ||||||||||||| | |
Sbjct 1261 GCAGATAGGTGGAACCCGGCTGATTTGCGGGATTCCAGATATGTGTGGTTACCGTTAGTT 1320
Query 1628 AGTTGGTGGACCGGCTGATC-GTCCTCTTG-AGTAT-AGTTTCGGGTTTCCGA-TGTGGT 1683
| | |||||||| ||||||| | ||| ||| ||| | | ||||||||| || | ||||||
Sbjct 1321 A-TAGGTGGACCTGCTGATCAG-CCT-TTGGAGT-TCAATTTCGGGTTCCC-ACTGTGGT 1375
Query 1684 CGAGAGTTTCTGTATATTGGCATAGACAA-TGGCGGTTGCCTT 1725
||||||| ||| | || ||||| || ||| |||||| ||||||
Sbjct 1376 CGAGAGTGTCTATCTACTGGCACAG-CAAATGGCGGCTGCCTT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5