BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49890.1
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897870 jgi|Araly1|897870|Al_scaffold_0005_1836 937 0.0
Ahg485350 jgi|Araly1|485350|fgenesh2_kg.5__1342__AT3G49900.1 147 2e-34
> Ahg897870 jgi|Araly1|897870|Al_scaffold_0005_1836
Length=663
Score = 937 bits (507), Expect = 0.0
Identities = 613/665 (92%), Gaps = 4/665 (1%)
Strand=Plus/Plus
Query 127 ATGGCTAAACGGGAGTTAAGTGGAGGAGATAGCAGCAGCGAAGATGAAGATCCCAAGTGG 186
|||||| | || ||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTGATCGAGAGAGAAGTGGAGGAGATAGCAGCAGTGAAGATGAAGATCCCAAGTGG 60
Query 187 AGAGCTGCAATCAATTCGATAGCCACCACCACCGTTTACGGCGCCTCCGCCACGAAACCC 246
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGCTGCAATCAATTCGATAGCCACCACCACCGTTTACGGCGCCTCCGCCACGAAACCC 120
Query 247 GCAGCTACTCAG-TCACAT-AACTATGGAGATTTTCGTCTCAAACCTAAAAAACTAACAC 304
||||||||| || | || | || ||||||||||| | ||||||||||||| |||||||
Sbjct 121 GCAGCTACTAAGCT-ACGTGAAG-ATGGAGATTTTAGAATCAAACCTAAAAAGCTAACAC 178
Query 305 ATGGGCAAATCAAGGTGAAGAATCTTTTGAATGAAATGGTGGAGAAGACTTTAGACTTTG 364
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 ATGGGCAGATCAAGGTGAAGAACCTTTTGAATGAAATGGTGGAGAAGACTTTAGACTTTG 238
Query 365 TTGAAGATCCTGTCAATATTCCTGAGGATAAACCCGAGAATGACTGTGGAGTTCGGTTAT 424
|| |||||||||||||| |||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct 239 TTAAAGATCCTGTCAATGTTCCCGAGGATAAACCAGAGAATGATTGTGGAGTTCGTTTAT 298
Query 425 TTAAGCGGTGTGCTACTGGCATTGTATTTGATCATGTAGATGAGATTAGAGGACCTAAAA 484
||||||||||||| |||||||| | |||||||||||||||||||||| |||||| ||||
Sbjct 299 TTAAGCGGTGTGCAACTGGCATAATCTTTGATCATGTAGATGAGATTAAAGGACCCAAAA 358
Query 485 AGAAGCCTAATTTACGCCCTGACAAAGGAGTTGAAGGAAGCTCTAAAGAGTTTAAGAAAC 544
||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 359 GGAAGCCTAATTTACGCCCTGACAGAGGAGCCCAAGTAAACTCTAAAGAGTTTAAGAAAC 418
Query 545 GAGTAAAATCAATTGCTGTTGATGGTTCGGATATTTTAACTGCTGCTGTGGAAGCGGCGA 604
|| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 419 GAATAAAATCAATTGCTGTTGATGGGTCGGATATTTTAACTGCTGCTACGGAAGCGGCCA 478
Query 605 AGAAAGCCTCGGCTAGATTAGATGCGAAAGAAGTGGCAGCgaaagataaagctaagaaag 664
||||||||||||||||| |||| |||||||||| |||||| |||| ||||||||||||||
Sbjct 479 AGAAAGCCTCGGCTAGAATAGAGGCGAAAGAAGCGGCAGCAAAAGCTAAAGCTAAGAAAG 538
Query 665 aggaagagagaatcgcagagttgaagaaagtaagaggagaaaaaTGGTTACCTTCTATTG 724
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 AGGAAGAGAGAATCGCAGAATTGAAGAAAGTAAGAGGTGAAAAATGGTTACCTTCTATTG 598
Query 725 AAAGGGCAATGAAAAAGGAAATGAAGCGTATCAAACATACCGCATGGAAGTCTGCAATGT 784
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 AAAGGGCAATGAAAAAGGAAATGAAGCGTATCAAACATACGGCATGGAAGTCTGCAATGT 658
Query 785 CGTGA 789
|||||
Sbjct 659 CGTGA 663
> Ahg485350 jgi|Araly1|485350|fgenesh2_kg.5__1342__AT3G49900.1
Length=1536
Score = 147 bits (79), Expect = 2e-34
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 923 TTATTTGTTCTTAATGTAGTGAGAGTGAAGTTCTTCAGAGATGTTGTCATCATTGTCGTC 982
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1536 TTATTTGTTCTTGATGTAGTGAGAGTGAAGTTCTTCAGAGATGTTGTCATCATCGTCGTC 1477
Query 983 TTTGATCCAGACGAAGTCTTCTAATCCA 1010
||||||||||||||| ||||||||||||
Sbjct 1476 TTTGATCCAGACGAAATCTTCTAATCCA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37551073245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5