BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49900.2
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485350 jgi|Araly1|485350|fgenesh2_kg.5__1342__AT3G49900.1 2196 0.0
> Ahg485350 jgi|Araly1|485350|fgenesh2_kg.5__1342__AT3G49900.1
Length=1536
Score = 2196 bits (1189), Expect = 0.0
Identities = 1444/1564 (92%), Gaps = 29/1564 (2%)
Strand=Plus/Plus
Query 112 ATGAAGCGATGGACAAACTTAGGGTTTGTTGATACGATTTATGAAGACGAAGACTACGTA 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCGATGGACAAACTTAGGGTTTGTTGATACGATTTATGAAGACGAAGACTACGTA 60
Query 172 GATCATCACtcttcttctttatcttcttcttcttcatctttgtctctttctcctaaacaa 231
| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 61 G---ATCACTCTTCTTCTTTATCTTCTTCTTCTTCATCTTTGTCTCCTTCTCCGAAACAA 117
Query 232 cctatcaatctctcttcttctccttcAATGGAGCTTGAATCTCGAGTCCATAAATGGTCG 291
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGTATCAATCTCTCTTCTTCTCCTTCAATGGAGCTTGAATCTCGAGTCCATAAATGGTCG 177
Query 292 TTGGCTAATAACTCTAAACCTGATGTATTCGTAAATGTGGGAGGCACAAGGTTCCATCTT 351
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 TTGGCTAATAACTCTAAACCTGATGTGTTCGTAAATGTGGGAGGCACAAGGTTCCATCTT 237
Query 352 CACAAGGATCCTCTGTCAAAGAGTGGCTATTTAAAACGCCACCTAACGGGCGTTAACGAA 411
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 CACAAGGATCCTCTGTCAAAGAGTGGCTATTTAAAACGCTACCTAACGGGCGTTAACGAA 297
Query 412 TTAACTCTCTCACCGCCGTTAAACATAACGGCTGAAACGTTTTCGTTAGTTGCCGGTTTC 471
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 TTAACTCTCTCACCGCCGTTAAATATAACGGCTGAAACGTTTTCGTTAGTTGCCGGTTTC 357
Query 472 TGTTACGGCGCTCACATTGAGTTAACGCCGTCCAATGTCGTTTCGTTGAGAATCGCCGTG 531
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 358 TGTTACGGCGCTCACATTGAGTTAACGCCGTTCAATGTTGTTTCGTTGAGAATCGCCGTC 417
Query 532 GAGGTTCTTCTGATTACGGAAGCTGACGACGGAGGAAGAGTTAGAGATAGCTTGAGGAAC 591
||| ||||||| || ||||||||||||||||||||||||| |||| || |||||||
Sbjct 418 GAGATTCTTCTCATGACGGAAGCTGACGACGGAGGAAGAG--AGAGC---CT-GAGGAAC 471
Query 592 TTGACGGAGTCTTATCTCCGACGAGTCGTCTTCGTAAACGTTGATTACATTCAGATCGTT 651
||||||||||||||||||||||||||||||||||| | |||||| || | |||||||||
Sbjct 472 TTGACGGAGTCTTATCTCCGACGAGTCGTCTTCGTCAGCGTTGACTATACCCAGATCGTT 531
Query 652 CTCCGTTCGTGCCTTCTTCTTCTTCCGGAGTCTGAAACGACGGCGTTTCTGATCGGACGT 711
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 532 CTCCGTTCGTGCCTTCTTCTGCTTCCGGAGTCTGAAACGACGGCGTTTCTTATCGGACGA 591
Query 712 TGTGTAGAAGCTTTGATGGAAATCGGAGACGGTGATTGCGTTAACGAGTTTCTAGAAGAA 771
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 592 TGCGTAGAAGCTTTGATGGAAATTGGAGACGGTGACTGCGTTAACGAGTTTCTAGAGGAA 651
Query 772 GCTGTTAAACTTCCCGCCGGCGATTTTAACGTCGTCGCTGACGCCGTGCAGCAGCGGTTC 831
||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 652 GCTGTTAGGCTTCCCGCCGGCGATTTTAGCGTCGTCGCCGACGCCGTGCAACAGCGGTTC 711
Query 832 CCGCGTCACGATTTGCTTTATAGAATCGTTGATGCTTATGTGAAGGTAAAAAGGGAACAT 891
|||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 712 CCGCGTCACGATTTGCTTTATAGAATCGTTGATGCTTATGTGAAGG-A----G----CAT 762
Query 892 GACGGAGAGATGACGGAGGAAGAGAAGGTTCAGATATGTAATTCGATAGACTGTGACAAA 951
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GACGGAGAGATAACGGAGGAAGAGAAGGTTCAGATATGTAATTCGATAGACTGTGACAAA 822
Query 952 CTCTCGCCCCCTTTACTACTTCACGCTGTTCAAAACCCGAAAATGCCCCTGAGGTTTATA 1011
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CTCTCGCCGCCGTTACTACTTCACGCTGTTCAAAACCCGAAAATGCCCCTGAGGTTTATA 882
Query 1012 GTTCGGGCGATGCTACAAGAGCAGCTCAACACTCGCCACTCGATCATGGTAGCTGCTGTT 1071
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 883 GTTCGCGCGATGCTACAAGAGCAGCTCAACACTCGCCACTCGATCATGGCAGCTGCAGCC 942
Query 1072 GCTGCGTCCTGCGCGGCTCCTACTGGTGTTCGACACAGAGAGATTGCCACAGAGGCGAGA 1131
| | || | | ||| ||||| ||| | |||||| | || ||||| ||| |||||||
Sbjct 943 G-T-CG-CTTCCGCTGCTCCGGTTGGAGACCGACACCGGGATATTGCTGCAGCGGCGAGA 999
Query 1132 GACTCCTCCGTGACGCTTGGATCGCTCCTCCAGCGAGATACGGCGGCGAGGCAAAACTGT 1191
||||||||||| |||||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 1000 GACTCCTCCGTTACGCTTGGATCGCTTCTCCAGCGAGACACCGCGGCGCGGCAAAACTGT 1059
Query 1192 CGGCTAAGAGCTGCGATGAATTCCACAAGCTCGAGGATTGAAAGCCTAGAGAAAGAGCTC 1251
||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 1060 CGGCTCAGAGCTGCGATGAATTCCACAAGCTCGAGGATTGAGAGCTTGGAGAAAGAGCTA 1119
Query 1252 GACACAATGAAGAGATTCCTATCGAAAGAATCAGAGAAGCAGAAATCGGACCGGAAT-AT 1310
||| | ||||||| |||| ||||||||||||| |||||||||||||| ||||| | | ||
Sbjct 1120 GACGCGATGAAGAAATTCTTATCGAAAGAATCGGAGAAGCAGAAATCAGACCGTA-TCAT 1178
Query 1311 CGTGGAGTCGAGGTCAAGAAGCGTGATGGATTCTGCTCGATCCGCGAGTTTCCATTGCGT 1370
| | || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 1179 CATCGATTCGAGGTCAAGAAGTGTGATGGATTCCGCTCGATCCGCGAGTTTCCATTGCAT 1238
Query 1371 TCACCAACCGAGTAACGTAAACAAGACGCAGAGAGGCGATAGAGGTTCTGTTTCAAACCT 1430
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TCACCAACCGAGTAACTTAAATAAGACGCAGAGAGGCGATAGAGGTTCTGTTTCAAACCT 1298
Query 1431 GAGCACAACTTACCGGCGAAGAAGAGCATCTCCACCACAAGCACAACCGCAGAAAAGTAT 1490
|||||| |||| || ||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1299 GAGCACGACTTTCCAGCGAAGAAGAGCATCTCCACC----GCA-A-CCGCAGAAAAGTAT 1352
Query 1491 CGGAAAAAGACTGATTATGGGAATAAAGAATGCTTTCTCTACATCATCCAAACAAGTACC 1550
||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1353 CGGGAAAAGACTGATTAAGGGAATAAAGAACGCTTTCTCTACATCATCCAAACAAGTACC 1412
Query 1551 CAAGAAAAATGCATATGCAGTAGAGGAGATTTATGATGGATTAGAAGACTTCGTCTGGAT 1610
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1413 CAAGAAAAATGCATACGCAGTCGAGGAGATATATGATGGATTAGAAGATTTCGTCTGGAT 1472
Query 1611 CAAAGACGACAATGATGACAACATCTCTGAAGAACTTCACTCTCACTACATTAAGAACAA 1670
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1473 CAAAGACGACGATGATGACAACATCTCTGAAGAACTTCACTCTCACTACATCAAGAACAA 1532
Query 1671 ATAA 1674
||||
Sbjct 1533 ATAA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5