BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49910.1

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937821 jgi|Araly1|937821|scaffold_502012.1                        793    0.0  


> Ahg937821 jgi|Araly1|937821|scaffold_502012.1
Length=488

 Score =  793 bits (429),  Expect = 0.0
 Identities = 468/487 (96%), Gaps = 1/487 (0%)
 Strand=Plus/Plus

Query  33   CTCTCTCAATCCCGGCGGCG-AAGATGAAGTACAACCCAAGAGTGACCTCTTCTCGCAGA  91
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| 
Sbjct  1    CTCTCTCAATCCCGGCGGCGAAAGATGAAGTACAATCCAAGAGTGACCTCTTCCCGCAGG  60

Query  92   AAGAACAGGAAGGCTCATTTCACAGCTTCCTCCAGCGAGAGGCGTGTGATAATGAGCTCT  151
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AAGAACAGGAAGGCTCATTTCACAGCTTCCTCAAGCGAGAGGCGTGTGATAATGAGCTCT  120

Query  152  CCTCTCTCCACCGATCTTCGTCAGAAGTACAATGTCAGATCCATGCCGATCCGTAAAGAC  211
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  CCACTCTCCACCGATCTTCGTCAGAAGTACAATGTCAGATCCATGCCGATCCGTAAAGAT  180

Query  212  GACGAGGTTCAGATCGTTCGTGGTACTTACAAGGGACGTGAAGGCAAAGTTGTTCAGGTT  271
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  GACGAGGTTCAGATCGTTCGTGGTACTTACAAGGGACGTGAAGGTAAAGTTGTTCAGGTT  240

Query  272  TACCGTCGCAAATGGGTGATTCACATCGAGAGAATCACGAGGGAGAAGGTGAATGGAACA  331
            |||||||||||||||||||||||||||||||| || || || ||||||||||||||||| 
Sbjct  241  TACCGTCGCAAATGGGTGATTCACATCGAGAGGATTACAAGAGAGAAGGTGAATGGAACC  300

Query  332  ACCGTGAACGTTGGGATTCAGCCGTCGAAAGTTGTGATAACGAAGCTTCGTCTTGATAAA  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ACCGTGAACGTTGGGATTCAGCCGTCGAAAGTTGTGATAACGAAGCTTCGTCTTGATAAA  360

Query  392  GATAGGAAATCGCTTTTGGAGAGGAAGGCTAAGGGACGTGCTGCTGCTGATAAGGAGAAG  451
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  361  GATAGGAAATCGCTTTTGGAGAGGAAAGCTAAGGGTCGTGCTGCTGCTGATAAGGAGAAG  420

Query  452  GGTACTAAGTTTACGTCTGAGGATGTTATGCAGAACGTTGATTAAGTAAGAAGGAAGAAG  511
            |||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||
Sbjct  421  GGTACTAAGTTTACTTCGGAGGATGTTATGCAGAACGTTGATTAAGTGATAAGGAAGAAG  480

Query  512  AAATCTT  518
            |||||||
Sbjct  481  AAATCTT  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26190443979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5