BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49920.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323570 jgi|Araly1|323570|fgenesh1_pm.C_scaffold_5001114 592 1e-168
> Ahg323570 jgi|Araly1|323570|fgenesh1_pm.C_scaffold_5001114
Length=831
Score = 592 bits (320), Expect = 1e-168
Identities = 371/396 (94%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 287 CTGGGTATGACACCACATCTCGAACTTTCACAAAGTACAACGTCGGAGTCAGTGTCACAA 346
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 437 CTGGGTATGACACTACATCTCGAACTTTCACAAAGTACAACGTCGGAATCAGTGTCACAA 496
Query 347 AGCCAGATCAATGTGTCTCCATAATATTGGGAGATAAAGGAGATTCGATCAAAGCCTCTT 406
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 497 AGCCAGATCGATGTGCCTCCATAATATTGGGAGATAAAGGAGATTCGATCAAAGCTTCTT 556
Query 407 ATGTATATTACCTAGATGAGTCGACGAGAAGCGCAACAGTTGGAGAGGTTATCAGGAAAA 466
|| | ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 557 ATCTTTATCACCTAGATGAGTCGAAGAGAAGCGCGGCAGTTGGAGAGGTTATCAGGAAAA 616
Query 467 TCTCAACTAATGAG-ACAACAGTAACTGTTGGTGGATTGTATGCGGTTGATCACTTAACG 525
||||||| || ||| || |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 617 TCTCAACGAACGAGAAC-ACAGTAACTGTTGGTGGATTGTATGCTGTTGATCACTTGACG 675
Query 526 AATGTGAAAGCTAAGCTGAACAGTAACGGTAAGTTTGGAGCTCTTCTGCAACACGAGGGC 585
||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 676 AATGTTAAAGCTAAGCTGAACAGTAACGGTAAGCTTGGAGCTCTTCTGCAACATGAGGTC 735
Query 586 CTTCCAAAATCGATAGTGACAATCTCAGGTGAGATTGATACCAAGACATTAGACAAGTAC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CTTCCAAAATCGATAGTGACAATCTCAGGTGAGATTGATACCAAGACATTAGACAAGTAC 795
Query 646 CCAAGGTTAGGTCTCTCGCTTTCCCTTAAACCTTGA 681
|||||||| |||||||| ||| | ||||||||||||
Sbjct 796 CCAAGGTTTGGTCTCTCTCTTGCACTTAAACCTTGA 831
Score = 383 bits (207), Expect = 1e-105
Identities = 221/228 (97%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAAGGGTCCGGGACTATTCGCCGACATCGGAAAATATGCGAAAGATCTGTTGACG 60
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1 ATGAGTAAGGGTCCGGGACTATTCGCCGATATCGGAAAATCTGCGAAAGATCTGTTGACG 60
Query 61 AGAGATTACAGTACCGATCAGAAATTCAGTATCTCCACTAACAGTGTCTCCGGCGTCGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGATTACAGTACCGATCAGAAATTCAGTATCTCCACTAACAGTGTCTCCGGCGTCGCT 120
Query 121 CTTACTTCCACTGCTCTCAAGAATGGAGTACTACATGCTGCTAATGTTGCCACACAATAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTTACTTCCACTGCTCTCAAGAATGGAGTACTACATGCTGCTAATGTTGCTACACAATAC 180
Query 181 AAGTACAGAAACACTTTCTTCGATGTCAAGATCGATACTGATTTCAAT 228
||||||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct 181 AAGTACAGAAATGCTTTGTTCGATGTCAAGATCGATACTGATTCCAAT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5