BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49930.1
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485352 jgi|Araly1|485352|fgenesh2_kg.5__1344__AT3G49930.1 828 0.0
Ahg496850 jgi|Araly1|496850|fgenesh2_kg.8__2666__AT5G67450.1 176 2e-43
> Ahg485352 jgi|Araly1|485352|fgenesh2_kg.5__1344__AT3G49930.1
Length=665
Score = 828 bits (448), Expect = 0.0
Identities = 594/657 (90%), Gaps = 39/657 (6%)
Strand=Plus/Plus
Query 1 ATGGCTCTCGACACTCTCAATTCTCCCACCTCCACCACCACAACCACCGCTCCTCCTCCT 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCTCTCGAGACTCTCAATTCTCCCACCTCCACCACCACCACCACCGCTCCTCCTCCT 60
Query 61 TTCCTCCGTTGCCTCGACGAAACCGAGCCCGAAAACCTCGAATCATGGACCAAAAGAAAA 120
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTCCTCCACTGCCTCGATGAAACCGAATCCGAAAACCTCGAATCATGGACCAAAAGAAAA 120
Query 121 CGTACAAAACGTCACCGTATAGATCAACCAAACCCTCCTCCTTCTGAAGAAGAGTATCTC 180
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 CGTACAAAACGTCACCGTATAGATCAACCAAA--C-CCTCCTTCTGAAGAAGAGTATCTA 177
Query 181 GCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCGATCATCACTCTCCACCGTCGGAT 240
||||||||||||||||||||||||||||||||||||| |||| | || | || |
Sbjct 178 GCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCG---ATCA---T-CA-C-TC---T 225
Query 241 CATCACTCTCTTTCTCCACTGTCCGATCATCAGAAAGATTACAAGTGTTCCGTCTGTGGC 300
||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 226 --TCA-----------C-C-GTCCGATCATCAGAAAGATTACAAGTGTTCCGTCTGTGGC 270
Query 301 AAATCTTTCCCGTCTTACCAAGCGTTAGGTGGACACAAAACAAGTCACCGGAAACCGGTT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AAATCTTTCCCGTCTTATCAAGCGTTAGGTGGACACAAAACAAGTCACCGGAAACCGGTT 330
Query 361 AG------T---GTCGATGTTAATAATAGTAACGGAACCGTTACTAATAACGGAAATATT 411
|| | | ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 331 AGTATTAATAACGACGATGCTAATAATAGTAACGGTTCCGTTACTAATAACGGAAATATT 390
Query 412 AGTAACGGTTTAGTTGGTCAAAGTGGGAAGACTCATAACTGCTCTATATGTTTTAAGTCG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 391 AGTAACGGTTTAGTTGGTCAAAGTGGGAAGACTCATAACTGCTCTATATGTTTCAAGTCG 450
Query 472 TTTCCCTCTGGTCAAGCATTGGGTGGTCACAAACGTTGTCACTATGATGGTGGTAACGGT 531
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 451 TTTCCCTCTGGTCAAGCATTGGGTGGTCACAAACGGTGTCACTATGACGGTGGTAACGGT 510
Query 532 AACAGTAACGGTGACAATAGCCACAAGTTTGACCTAAATTTACCGGCTGATCAAGTTAGT 591
||| |||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 511 AACGGTAACGGTGATAATAGCCACAGGTTTGACCTGAATTTACCAGCTGATCAAGTTAGT 570
Query 592 GATGAGACAATTGGAAAAAGTCAACTCTCCGGTGAAGAAACAAAGTCGGTGTTGTGA 648
||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 571 GATGAGACACTTGGAAAAAGTCAACTCTCCGGCGAAGAAACCAAGTCGGTGTTGTGA 627
Score = 65.8 bits (35), Expect = 4e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 681 AGTGGTTGATCATTAGCTGAGTCTGTAATGAAAATGAT 718
|||| |||||||||||||||||||||||||||||||||
Sbjct 628 AGTGATTGATCATTAGCTGAGTCTGTAATGAAAATGAT 665
> Ahg496850 jgi|Araly1|496850|fgenesh2_kg.8__2666__AT5G67450.1
Length=1105
Score = 176 bits (95), Expect = 2e-43
Identities = 170/204 (83%), Gaps = 13/204 (6%)
Strand=Plus/Plus
Query 159 TCCTTCTGAAGAAGAGTATCTCGCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCGA 218
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 222 TCCTTCTGAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCG- 280
Query 219 TCATCACTCTCCACCGTCGGA-TCATC-AC--TCTCTTTCTCCACTGTCCGATCATCAGA 274
| | || ||||| || || || || || || | | || ||| ||||||||| | ||
Sbjct 281 T-A-CAATCTCCTCC-TCTTCCTCCTCTACCGTCACGTCCTTCACCGTCCGATCACC-GA 336
Query 275 AAGATTACAAGTGTTCCGTCTGTGGCAAATC-TTTCCCGTCTTACCAAGCGTTAGGTGGA 333
||||||||||||||||| ||||| ||||| ||| | |||||||||||| |||||||||
Sbjct 337 --GATTACAAGTGTTCCGTTTGTGGAAAATCGTTTTC-GTCTTACCAAGCCTTAGGTGGA 393
Query 334 CACAAAACAAGTCACCGGAAACCG 357
||||| || |||||||||||||||
Sbjct 394 CACAAGACGAGTCACCGGAAACCG 417
Score = 56.5 bits (30), Expect = 3e-07
Identities = 35/37 (95%), Gaps = 2/37 (5%)
Strand=Plus/Plus
Query 559 TTTGACCTAAATTTACCGGCTGATCAAGT-T-AGTGA 593
||||||||||||||||||||||||||||| | |||||
Sbjct 742 TTTGACCTAAATTTACCGGCTGATCAAGTCTCAGTGA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26419181481
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5