BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49940.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937824 jgi|Araly1|937824|scaffold_502015.1 1000 0.0
> Ahg937824 jgi|Araly1|937824|scaffold_502015.1
Length=752
Score = 1000 bits (541), Expect = 0.0
Identities = 709/784 (90%), Gaps = 36/784 (5%)
Strand=Plus/Plus
Query 104 TAAAAG-ATTTCTGAAAATAATGAGTTGCAATGGTTGTCGAGTTCTACGAAAAGGTTGCA 162
|||||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TAAAAGAATTTCTGATAATTATGAGTTGCAATGGTTGTCGAGTTCTTCGAAAAGGTTGCA 60
Query 163 GTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC 120
Query 223 ACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCG 282
|||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 121 ACGCCACCGTCTTCGTTGCTAAGTTCTTTGGCCGTGCCGGTCTCATGTCTTTCATCTCCG 180
Query 283 CCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTATACGAAGCTTGTGGGA 342
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 181 CCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAA 240
Query 343 GAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTT 402
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 241 GAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACTGGGAACTGGAATATTT 300
Query 403 GTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTC 462
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 301 GTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTGAAACCGATACCGGAGCTTC 360
Query 463 TTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCT 522
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 361 TTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGATGAAGCTTCTGAGATTT 420
Query 523 GTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATC 582
||||||||||||||||||||||||||| ||||||||||||||| || || ||||| ||||
Sbjct 421 GTACGGAAATGTTGAATCTACGAAAAGATGATGATTCCGGTGACCGTAATATTTACCATC 480
Query 583 ACTGCCGATTCTCAAGCTCTAGATCTAGATCAAGATCAACAGCTTCTCCGCCGAAACGGA 642
||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||
Sbjct 481 ACTGCCGATTCTCAAGCTCTAGATC-----CA-GATCAACGGCTTCTCCACCGAAACGGA 534
Query 643 AACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTA-TT 701
|||| ||||||||||| | | || | || |||||| ||||||| ||
Sbjct 535 AACGGTTATCGTCGGAGC-------T-CG----ATCT--ATCTCTG----ATTCCTACTT 576
Query 702 TATCCGATTAAAACCTTGCCGTTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCT 761
| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 577 T-TCCGATTAAAACGGTGCCGTTTAAGGAAGATACACCGTCGATGTATTCGGAGGAGTCT 635
Query 762 GTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGA 821
|| || ||||||||||||| | ||||||||||||||||||||||||||||| | | ||||
Sbjct 636 GTCACGACGGTTTCGTTTCGAGACAACAACGCCGGTGATCGGTACGTACGC-G-G-CGGA 692
Query 822 GGAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCTTGAACGGCGTCGTTTTTG 881
||||||| | | | || ||||||||||||| || ||||||| ||||||||||||||||
Sbjct 693 GGAGGAG-A--A--A-CGGCAAAGTTGCTCAACCTTTTCGCTTAAACGGCGTCGTTTTTG 746
Query 882 TTAT 885
||||
Sbjct 747 TTAT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5