BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49950.1
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348107 jgi|Araly1|348107|fgenesh1_pg.C_scaffold_5001499 1821 0.0
Ahg332832 jgi|Araly1|332832|fgenesh1_pm.C_scaffold_8002175 499 2e-140
> Ahg348107 jgi|Araly1|348107|fgenesh1_pg.C_scaffold_5001499
Length=1497
Score = 1821 bits (986), Expect = 0.0
Identities = 1127/1196 (94%), Gaps = 6/1196 (1%)
Strand=Plus/Plus
Query 61 ATGACCAAAACCCGGATTCTCAACCCGACCCGATTCCCTTCTCCCAAACCCTTACGTGGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACCAAAACCCGGATTCTCAACCCGACCCGATTCCCTTCTCCCAAACCCTTACGTGGA 60
Query 121 TGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTTCACTGCGCCACCGCCATAGACTCC 180
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 GGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTCCACTGCGCTACCGCCATAGACTCC 120
Query 181 AACGACGCTGCATTAACTCACCAAATCCTCTGGGTCCTCAACAACATCGCTCCACCAGAC 240
|||||||| ||||| |||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 121 AACGACGCCGCATTGACTCACCAAATCCTCTGGGTGCTCAACAACATCGCCCCATCAGAC 180
Query 241 GGTGACTCCACCCAACGTCTTACATCCGCATTCCTCCGCGCGTTGCTCTCACGCGCCGTC 300
||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 GGTGACTCCACACAACGACTTACCTCCGCCTTCCTCCGCGCGTTGCTCTCACGCGCCGTC 240
Query 301 TCCAAAACCCCTACACTATCATCCACCATTAGCTTCCTACCTCAGGCCGATGAACTCCAT 360
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 241 TCCAAAACCCCTACACTATCATCCACCATTAGTTTCCTACCTCCGGCCGACGAACTCCAC 300
Query 361 CGTTTCTCAGTCGTGGAGTTAGCCGCTTTCGTAGACCTCACTCCGTGGCACCGGTTCGGA 420
|| ||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||
Sbjct 301 CGGTTCTCAGTCGTGGAGCTAGCTGCATTCGTAGACCTCACTCCGTGGCACAGGTTCGGA 360
Query 421 TTCATTGCAGCCAACGCCGCGATCTTAACCGCCGTTGAAGGTTACTCAACGGTTCACATC 480
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TTCATAGCAGCCAACGCCGCGATCTTAACCGCCGTGGAAGGTTACTCAACGGTTCACATC 420
Query 481 GTTGACTTAAGTTTGACTCATTGTATGCAAATCCCTACTCTTATAGACGCCATGGCAAGC 540
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 421 GTTGACTTAAGTTTGACTCATTGTATGCAAATTCCTACTCTCATAGACGCCATGGCAAGA 480
Query 541 CGACTCAACAAACCTCCTCCGCTTCTTAAACTCACCGTCGTCTCTTCCTCCGACCACTTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CGACTCAACAAACCTCCTCCGCTTCTTAAACTCACCGTCGTCTCTTCCTCCGACGACTTC 540
Query 601 CCACCATTCATCAACATCTCCTACGAAGAACTCGGATCTAAACTAGTCAACTTCGCCACC 660
|||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 541 CCACCATTCATCAACATCTCATACGAAGAACTCGGATCCAAACTCGTAAACTTCGCCACC 600
Query 661 ACACGAAACATTACAATGGAGTTCACAATCGTACCTTCTACTTACTCCGATGGCTTCTCC 720
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 ACACGAAACATAACAATGGAGTTCACAATCATACCTTCTACTTACTCCGATGGCTTCTCT 660
Query 721 TCCCT-CTTACAACAGTTACGGATTTATCCTTCTTCATTCAACGAAGCTCTCGTCGTTAA 779
|| || | | ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 661 TCTCTAC-TCCAACAATTACGTATTTACCCTTCTTCATTCAACGAAGCTCTCGTCGTCAA 719
Query 780 CTGTCACATGATGCTCCGTTACATCCCTGAAGAACCCCTAACTTCATCATCATCATCGCT 839
|||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 720 CTGTCATATGATGCTCCGTTATATCCCTGAAGAAACCCTAACTTCATCATCATCATCTCT 779
Query 840 CCGAACAGTTTTCTTG-AAACAACTCCGATCTTTGAATCCAAGAATCGTAACCCTAATCG 898
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCGAACAGTTTTCTTGAAAAC-ACTCCGATCTTTGAATCCAAGAATCGTAACCCTAATCG 838
Query 899 AAGAAGACGTAGATCTCACATCGGAGAACTTGGTTAACCGGTTAAAATCGGCGTTTAACT 958
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 AAGAAGACGTAGATCTCACATCGGAGGGTTTGGTTAACCGGTTAAAATCGGCGTTTAACT 898
Query 959 ACTTCTGGATTCCGTTCGATACGACGGACACGTTTATGAGTGAGCAGAGACGGTGGTACG 1018
|||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 899 ACTTCTGGATCCCGTTCGATACGACGGACACGTTAATGAGCGAGCAAAGACGGTGGTACG 958
Query 1019 AGGCGGAGATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCggagagagtgg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 AGGCGGAGATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCGGAGAGGGTGG 1018
Query 1079 agaggac-ggagacgaagagacggtggatagagagaatgagagagGCTGAGTTCGGTGGA 1137
|||| | |||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1019 AGAG-ATTGGAGCCGAAGAGACGGTGGATAGAGAGGATGAGAGAGGCTGAGTTCGGCGGA 1077
Query 1138 GTTAGGGTTAAAGAAGATGCGGTGGCGGATGTGAAGGCGATGCTGGAGGAGCACGCTGTC 1197
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1078 GTTAGGGTTAAGGAAGAGGCGGTGGCTGATGTGAAGGCGATGCTGGAGGAGCACGCCGTC 1137
Query 1198 GGGTGGGGAATGAAGAAGGAAGACGACGACGAGAGTCTCGTGCTGACGTGGAAAGG 1253
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1138 GGGTGGGGAATGAAGACGGAAGACGACGACGAGAGTCTTGTGCTGACGTGGAAAGG 1193
> Ahg332832 jgi|Araly1|332832|fgenesh1_pm.C_scaffold_8002175
Length=1299
Score = 499 bits (270), Expect = 2e-140
Identities = 924/1223 (76%), Gaps = 111/1223 (9%)
Strand=Plus/Plus
Query 121 TGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTTCACTGCGCCACCGCCATAGACTCC 180
|||||||| || |||| |||||| ||||| ||||| || ||||| | ||||| || ||
Sbjct 70 TGCGGCGATGCCAACTGCATGGAGCAGCTTCTCCTCCATTGCGCAAAGGCCATCGAATCA 129
Query 181 AACGACGCTGCATTAACTCACCAAATCCTCTGGGTCCTCAACAACATCGCTCCACCAGAC 240
|||||||| | || |||| || ||| | ||||| ||||||||| ||||| |||| |||
Sbjct 130 AACGACGCCACGTTGGCTCAACAGATCATTTGGGTGCTCAACAACCTCGCTTCACCCGAC 189
Query 241 GGTGACTCCACCCA-ACGTCTTACATCCGCATTCCTCCGCGCGTTGCTCTCACGCGCCGT 299
|| ||||| || || | | || | ||| | |||||||||||||| ||||||||||||
Sbjct 190 GGAGACTCAACTCAGA-GACTCGCTTCCTCCTTCCTCCGCGCGTTAATCTCACGCGCCGC 248
Query 300 CTCCAAAA-CCC--C-TACAC-TATC-ATCCAC---CAT--TA--GCTTCC-TAC-CTCA 344
|||||||| ||| | | | | | || || ||| | | || |||||| | | | ||
Sbjct 249 CTCCAAAAGCCCTGCGTTCGCGTTTCTAT-CACTGGC-TGCTACCGCTTCCGT-CTCCCA 305
Query 345 GGCCGATGAACTCCATCGTTTCTCAGTCGTGGAGTTAGCCG-CTTTCGTAGACCTCACTC 403
| ||| || || || ||||| ||| | ||| | || | ||| |||||| | || |
Sbjct 306 -GAAAATG--CTACACCGGTTCTCCGTCATAGAGCTCGCGGAGTTT-GTAGACTTAACGC 361
Query 404 CGTGGCACCGGTTCGGATTCATTGCAGCCAACGCCGCGAT-CTTAACCGCCGTTGAAGGT 462
|||||||||| ||||||||||| || || |||||||| || || | |||||| ||||||
Sbjct 362 CGTGGCACCGTTTCGGATTCATAGCCGCGAACGCCGCAATCCTCGA-CGCCGTCGAAGGT 420
Query 463 TACTCAACGGTTCACATCGTTGACTTAAGTTTGACTCATTGTATGCAAATCCCTACTCTT 522
|| || | ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 TATTCCTCTGTTCACATCGTTGACTTAAGTTTGACTCACTGCATGCAAATCCCTACTCTT 480
Query 523 ATAGACGCCATGGCAAGCCGACTCAACAAAC--CTCC-TCCGCTTCTTAAACTCACCGTC 579
|||||| ||||||||| | |||| |||||| | || ||||||||| |||||||| |||
Sbjct 481 ATAGACTCCATGGCAAACAAACTCCACAAACAACCCCCTCCGCTTCTCAAACTCACTGTC 540
Query 580 GTCT-CTTCCT-C-C-GAC-CACTTCC-C-ACCATT-CATCA-ACATCTCCTACGAAGAA 630
| | ||||| | | || | | ||| | ||| || | || | ||||||||||||||
Sbjct 541 AT-TGCTTCCGACACTGAATCTCATCCGCCACCGTTGC-TCGGA-ATCTCCTACGAAGAG 597
Query 631 CTCGGATCTAAA-CTAGTCAACTTCGCCACCACACGAAACATTA-CAATGGAGTTCACAA 688
|| || || ||| ||||| |||||||| || ||||| ||||| | |||||||||| | ||
Sbjct 598 CTGGGTTC-AAAGCTAGTAAACTTCGCGACAACACGTAACAT-AGCAATGGAGTTTAGAA 655
Query 689 TCGTAC-CTTCTACTTACTCCGATGGCTTCTCCTCCCTCT-TAC-AACAGTTACGGATTT 745
|| | | ||||| |||||||||| ||| |||||||||| | | | |||| |||| ||
Sbjct 656 TCAT-CTCTTCTTCTTACTCCGACGGCCTCTCCTCCCT-TAT-CGAACAACTACGAATCG 712
Query 746 ATCC-TTCTTCATTCAACGAAGCTCTCGTCGTTAACTGTCACATGATGCTCCGTTACATC 804
| || ||| || ||||| ||||||||||| |||||||| ||||||||||| | |||||||
Sbjct 713 ACCCATTCGTC-TTCAATGAAGCTCTCGTTGTTAACTGCCACATGATGCTTCATTACATC 771
Query 805 CCTGAAGAACCCCTAACTTC-ATCATCATCATCGCTCCGAACAGTTTTCTTGAAACAACT 863
|| || ||| || ||||||| | ||| | || ||||| ||||||| |||||| ||||
Sbjct 772 CCCGACGAAACCTTAACTTCGA--ATC--C-TC--TCCGATCAGTTTTATTGAAAGAACT 824
Query 864 CCGATCTTTGAATCCAA-GAATCGTAACCCTAATCGAAGAAGACGTAG-ATCTCACATCG 921
||| | | || |||| || ||||||||||||| || |||||| | | || |||| |||
Sbjct 825 TCGAGATCTAAACCCAACGA-TCGTAACCCTAATTGACGAAGAC-TCGGATTTCACCTCG 882
Query 922 GAG-AACTTGGT-TAACC-GGTTAAAATCGGCGTTTA-ACT-ACT-TCTGGATTCCGTT- 974
| ||||| | | || ||||| || | | || | | | | | |||||||| ||
Sbjct 883 -ACTAACTTTATCT--CCAGGTTACGGTCT-C-TCTACAATTA-TATGTGGATTCC-TTA 935
Query 975 CGATAC-GACGGACACGTTTATGA---GTG--AGC-AG-AGACG--GTGGTACGAGGCGG 1024
||| || | || ||| |||| ||| | | ||| || | | | |||||||||||| |
Sbjct 936 CGAAACCGCCG-ACATGTTTTTGACACGCGGCAGCGAGCATAGGCAGTGGTACGAGGCAG 994
Query 1025 AGATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCggagagagtggagagga 1084
| ||||||||||||||||| ||| | || || ||||||||||||||||| |||||||| |
Sbjct 995 ATATAAGTTGGAAGATAGATAACATAGTAGCCAAGGAAGGTGCGGAGAGGGTGGAGAG-A 1053
Query 1085 c-ggagacgaagagacggtggatagagagaatgagagagGCTGAGTTCGGTGGAGTTAGG 1143
|||| ||||||| |||||| | ||| | ||||| || ||| |||| | |||||| ||
Sbjct 1054 TTGGAGCCGAAGAGCCGGTGGTTCGAGCGGATGAGGGAAGCTAAGTTTGCCGGAGTT-GG 1112
Query 1144 GTTAAA-GAAGATG-CGGTGG-CGGATGTGAAGGCGATGCTGGAGGAGCACGCTGTCGGG 1200
||| || || | ||| || |||| || || ||||||||||||| ||||| |||
Sbjct 1113 GTTCGGCGA-GACGGCGG-GGACGGAGGTTAAAACGATGCTGGAGGAACACGCCACCGGT 1170
Query 1201 TGGGGAATGAAGAAGGAAG---ACGACGACGA-GA-GT----C-TC--GTGCTGACGTGG 1248
|||||||||||||| || | |||| || || || || | | ||||||||||||
Sbjct 1171 TGGGGAATGAAGAAAGATGTTGACGATGATGATGACGTGGAACGTTTTGTGCTGACGTGG 1230
Query 1249 AAAGGTCATAGTGTTGTGTTTGC 1271
|| || |||||||||||||||||
Sbjct 1231 AAGGGACATAGTGTTGTGTTTGC 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52221725895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5