BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49960.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897877 jgi|Araly1|897877|Al_scaffold_0005_1843 1591 0.0
> Ahg897877 jgi|Araly1|897877|Al_scaffold_0005_1843
Length=990
Score = 1591 bits (861), Expect = 0.0
Identities = 947/990 (96%), Gaps = 0/990 (0%)
Strand=Plus/Plus
Query 78 ATGGCTCGCTTCGATATTGTTCTACTCATAGGTCTTTGCCTCATAATCTCTGTCTTTCCC 137
||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| |||
Sbjct 1 ATGGCTCGCTTCGGCATTGTTCTAGTCATATCTCTTTGCCTCACAATCTCTGTCTTGCCC 60
Query 138 GATACAACCACCGCACAACTAAGCCGCGGTTTCTACTCCAAAACTTGCCCCAATGTCGAA 197
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATACAACCATCGCGCAGCTAAGCCGCGGTTTCTACTCCAAAACTTGCCCCAATGTCGAA 120
Query 198 CAAATCGTGAGAAATGCTGTCCAAAAGAAAATAAAGAAGACATTCGTCGCCGTCCCTGCC 257
|||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||
Sbjct 121 CAAATCGTGAGAAATGCTGTCCAAAAGAAAATAAAGCAGACGTTCGTCACCGCCCCTGCC 180
Query 258 ACTCTCCGTCTCTTCTTCCACGACTGCTTTGTCAATGGTTGTGATGCATCTGTCATGATC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTCCGTCTCTTCTTCCACGACTGCTTTGTCAATGGTTGTGATGCATCTGTCATGATC 240
Query 318 CAATCAACGCCTAAGAACAAGGCAGAGAAGGATCATCCAGATAACATTTCGCTAGCTGGA 377
||||||||||||| |||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 241 CAATCAACGCCTACGAACAAGGCAGAGAGGGATCATCCAGATAACATTTCGCTGGCCGGA 300
Query 378 GATGGATTTGATGTGGTGATCCAAGCTAAGAAAGCCCTTGACTCTAACCCTAGTTGCCGG 437
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 GATGGATTTGACGTGGTGATCCAAGCTAAGAAAGCCCTTGACGCTAACCCTCGTTGCCAA 360
Query 438 AACAAGGTCTCATGTGCCGATATTCTTACTTTGGCCACCCGAGATGTTGTTGTTGCGGCT 497
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AACAAGGTCTCATGTGCCGATATTCTTACTTTGGCCACCCGAGATGTCGTTGTTGCGGCT 420
Query 498 GGAGGACCGTCCTATGAAGTTGAACTTGGTAGGTTCGATGGTTTGGTATCAACCGCGTCA 557
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGGACCTTCCTATGAAGTTGAACTTGGTAGGTTCGATGGTTTGGTATCAACCGCGTCT 480
Query 558 AGTGTCGAAGGGAACTTACCAGGACCTTCGGACAATGTAGACAAACTTAATGCTCTTTTC 617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AGTGTCGAAGGGAACTTACCAGGACCTTCGGACAATGTAGACAAACTTAACGCTCTTTTC 540
Query 618 ACGAAAAACAAACTTACCCAAGAAGATATGATTGCTCTTTCAGCGGCTCACACCCTTGGA 677
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGAAAAACAAACTTACCCAAGAAGATATGATTGCTCTTTCAGCGGCTCACACCCTTGGA 600
Query 678 TTCGCACATTGTGGCAAGGTCTTTAAAAGAATCCACAAATTCAACGGCATCAACTCCGTG 737
||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 601 TTCGCACATTGCCGCAAGGTCTTTAAAAGAATCTACAACTTCAACGGCATCAACTCCGTG 660
Query 738 GACCCAACTTTAAACAAGGCTTACGCTATTGAGCTTCAAAAGGCTTGTCCTAAGAATGTG 797
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCCATCTCTAAACAAGGCTTACGCTATTGAGCTTCAAAAGGCTTGTCCTAAGAATGTG 720
Query 798 GACCCAAGAATTGCAATCAACATGGACCCAGTCACGCCCAAGACGTTTGACAACACTTAC 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACCCAAGAATTGCAATCAACATGGACCCAGTCACGCCCAAGACGTTTGACAACACTTAC 780
Query 858 TTCAAGAATCTTCAACAAGGCAAAGGTCTCTTCACCTCCGATCAAGTTCTCTTCACGGAT 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCAAGAATCTTCAACAAGGCAAAGGTCTCTTCACCTCCGATCAAGTTCTCTTCACGGAC 840
Query 918 GGTCGCTCTAGGCCCACCGTTAATGCTTGGGCCTCAAACTCTACGGCCTTTAACCGCGCT 977
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GGTCGCTCTAGGCCCACCGTTAATGCTTGGGCCTCAAACTCTACGGCCTTCAACCGCGCT 900
Query 978 TTTGTGATAGCCATGACCAAACTTGGCCGTGTTGGAGTTAAGAATAGCAGCAATGGAAAC 1037
||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 901 TTTGTGACCGCCATGACCAAACTTGGCCGTGTTGGTGTTAAGAATAGCCGCAATGGAAAC 960
Query 1038 ATCCGTCGTGATTGTGGTGCGTTTAACTAG 1067
|| |||||||| ||||||||||||||||||
Sbjct 961 ATTCGTCGTGACTGTGGTGCGTTTAACTAG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5